BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00010253
         (1142 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282496.1| PREDICTED: putative mediator of RNA polymera...   387   e-105
emb|CAN68925.1| hypothetical protein VITISV_044247 [Vitis vinifera]   378   e-102
ref|XP_002515912.1| RNA polymerase II mediator complex subunit, ...   358   1e-96
ref|XP_004149176.1| PREDICTED: LOW QUALITY PROTEIN: mediator of ...   349   6e-94
emb|CBI36012.3| unnamed protein product [Vitis vinifera]              349   6e-94

>ref|XP_002282496.1| PREDICTED: putative mediator of RNA polymerase II transcription
           subunit 6 [Vitis vinifera]
          Length = 258

 Score =  387 bits (993), Expect = e-105
 Identities = 196/257 (76%), Positives = 208/257 (80%), Gaps = 6/257 (2%)
 Frame = +1

Query: 103 MAATPMMPPNQVAGMPNLEGTPPV----PGTDMTGICFRDQLWLNSYPLDRNLVFDYFAL 270
           MA+TPM PPN  AG PN +G PP     PGTDMTGICFRDQLWLNSYPLDRNLVFDYFAL
Sbjct: 1   MASTPMAPPNPAAGNPNFDGNPPAVPTPPGTDMTGICFRDQLWLNSYPLDRNLVFDYFAL 60

Query: 271 SPFYDWTCNNEQIRMRSIHPLDISHLSKMTGIEYMLNEVMEPHLFVIRKQKRESPEKVTP 450
           SPFYDWTCNNEQ+R+RSIHPLD SHLSKMTG EYMLNEVMEPHLFVIRKQKR+ PEKVTP
Sbjct: 61  SPFYDWTCNNEQLRLRSIHPLDTSHLSKMTGTEYMLNEVMEPHLFVIRKQKRDGPEKVTP 120

Query: 451 MLTYYVMDGSIYQAPQLCNVFAARIGRALYHISKSFTTAASKLEKIGFVDGEAESAAFES 630
           MLTYY++DGSIYQAPQLCNVF ARIGRALYHISK+FTTAASKLEKIG+VD E E+ A ES
Sbjct: 121 MLTYYILDGSIYQAPQLCNVFTARIGRALYHISKAFTTAASKLEKIGYVDAENENPALES 180

Query: 631 KVEKELIDFKEVRRVDHILASLQRKL-QXXXXXXXXXXXXXXXSAEADKSSENQQGTEQQ 807
           KV KE IDFKEV RVD ILASLQRKL                 +AE +K  E QQ  E Q
Sbjct: 181 KVGKETIDFKEVMRVDQILASLQRKLPPAPPPPQFPEGYAPPPTAEGEKGPETQQAAEPQ 240

Query: 808 EP-LDPIIDQGPSKRMK 855
            P LDPIIDQGPSKRMK
Sbjct: 241 LPALDPIIDQGPSKRMK 257


>emb|CAN68925.1| hypothetical protein VITISV_044247 [Vitis vinifera]
          Length = 253

 Score =  378 bits (971), Expect = e-102
 Identities = 192/252 (76%), Positives = 203/252 (80%), Gaps = 6/252 (2%)
 Frame = +1

Query: 118 MMPPNQVAGMPNLEGTPPV----PGTDMTGICFRDQLWLNSYPLDRNLVFDYFALSPFYD 285
           M PPN  AG PN +G PP     PGTDMTGICFRDQLWLNSYPLDRNLVFDYFALSPFYD
Sbjct: 1   MAPPNPAAGNPNFDGNPPAAPTPPGTDMTGICFRDQLWLNSYPLDRNLVFDYFALSPFYD 60

Query: 286 WTCNNEQIRMRSIHPLDISHLSKMTGIEYMLNEVMEPHLFVIRKQKRESPEKVTPMLTYY 465
           WTCNNEQ+R+RSIHPLD SHLSKMTG EYMLNEVMEPHLFVIRKQKR+ PEKVTPMLTYY
Sbjct: 61  WTCNNEQLRLRSIHPLDTSHLSKMTGTEYMLNEVMEPHLFVIRKQKRDGPEKVTPMLTYY 120

Query: 466 VMDGSIYQAPQLCNVFAARIGRALYHISKSFTTAASKLEKIGFVDGEAESAAFESKVEKE 645
           ++DGSIYQAPQLCNVF ARIGRALYHISK+FTTAASKLEKIG+VD E E+ A ESKV KE
Sbjct: 121 ILDGSIYQAPQLCNVFTARIGRALYHISKAFTTAASKLEKIGYVDAENENPALESKVGKE 180

Query: 646 LIDFKEVRRVDHILASLQRKL-QXXXXXXXXXXXXXXXSAEADKSSENQQGTEQQEP-LD 819
            IDFKEV RVD ILASLQRKL                 +AE +K  E QQ  E Q P LD
Sbjct: 181 TIDFKEVMRVDQILASLQRKLPPAPPAPQFPEGYAPPPTAEGEKGPETQQAAEPQLPALD 240

Query: 820 PIIDQGPSKRMK 855
           PIIDQGPSKRMK
Sbjct: 241 PIIDQGPSKRMK 252


>ref|XP_002515912.1| RNA polymerase II mediator complex subunit, putative [Ricinus
           communis] gi|223544817|gb|EEF46332.1| RNA polymerase II
           mediator complex subunit, putative [Ricinus communis]
          Length = 251

 Score =  358 bits (920), Expect = 1e-96
 Identities = 183/253 (72%), Positives = 204/253 (80%), Gaps = 2/253 (0%)
 Frame = +1

Query: 103 MAATPMMPPNQVAGMPNLEGTPPVPGTDMTGICFRDQLWLNSYPLDRNLVFDYFALSPFY 282
           MA  P  P     G P     P  PGTDMTGICFRDQLWLN+YPLDRNL+FDYFALSPFY
Sbjct: 1   MATVP--PGANFDGNPLAPAPPQPPGTDMTGICFRDQLWLNTYPLDRNLIFDYFALSPFY 58

Query: 283 DWTCNNEQIRMRSIHPLDISHLSKMTGIEYMLNEVMEPHLFVIRKQKRESPEKVTPMLTY 462
           DWTCNNEQ+R++SIHPLD+SHLSKMTG EYMLNEV+EP+LFVIRKQKR+SPEKVTPMLTY
Sbjct: 59  DWTCNNEQLRLQSIHPLDLSHLSKMTGTEYMLNEVIEPNLFVIRKQKRDSPEKVTPMLTY 118

Query: 463 YVMDGSIYQAPQLCNVFAARIGRALYHISKSFTTAASKLEKIGFVDGEAESAAFESKVEK 642
           YV+DGSIYQAPQLCNVFAARIGRALYHISK+FTTAASKLEKIG+VD E E  A ESKV K
Sbjct: 119 YVLDGSIYQAPQLCNVFAARIGRALYHISKAFTTAASKLEKIGYVD-EGEGVASESKVGK 177

Query: 643 ELIDFKEVRRVDHILASLQRKL-QXXXXXXXXXXXXXXXSAEADKSSENQQGTE-QQEPL 816
           E+IDFKEV+R+DHILAS+QRKL                 + EA+K SE +Q  E Q  P+
Sbjct: 178 EVIDFKEVKRIDHILASIQRKLPPAPPPPPFPEGYVPPATVEAEKGSETRQAVETQPPPV 237

Query: 817 DPIIDQGPSKRMK 855
           DPIIDQGP+KRMK
Sbjct: 238 DPIIDQGPAKRMK 250


>ref|XP_004149176.1| PREDICTED: LOW QUALITY PROTEIN: mediator of RNA polymerase II
           transcription subunit 6-like [Cucumis sativus]
          Length = 260

 Score =  349 bits (896), Expect = 6e-94
 Identities = 183/258 (70%), Positives = 200/258 (77%), Gaps = 9/258 (3%)
 Frame = +1

Query: 109 ATPMMPPNQVAGMPNLEG-----TPPVPGTDMT---GICFRDQLWLNSYPLDRNLVFDYF 264
           ATP  PP    G  N EG      P  PGTDMT   GICFRDQLWLN+YPLDRNLVFDYF
Sbjct: 2   ATPP-PPTAPPGTGNFEGGPLPAAPQPPGTDMTNLPGICFRDQLWLNTYPLDRNLVFDYF 60

Query: 265 ALSPFYDWTCNNEQIRMRSIHPLDISHLSKMTGIEYMLNEVMEPHLFVIRKQKRESPEKV 444
           ALSPFYDWTCNNEQ+RMRSIHPLD+S LSKMTGIEYMLNEVMEPHLFV RKQKR+ PEKV
Sbjct: 61  ALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKV 120

Query: 445 TPMLTYYVMDGSIYQAPQLCNVFAARIGRALYHISKSFTTAASKLEKIGFVDGEAESAAF 624
           TPMLTYY++DGSIYQAPQLC+VFAAR+ RALY+ISK+FTTA+SKLEKIG+VD E ES   
Sbjct: 121 TPMLTYYILDGSIYQAPQLCSVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESE-- 178

Query: 625 ESKVEKELIDFKEVRRVDHILASLQRKL-QXXXXXXXXXXXXXXXSAEADKSSENQQGTE 801
           E K  KE I+FKEV+RVDHILASLQRKL                 +AE +K  ENQQG  
Sbjct: 179 EVKPAKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAPAATAETEKGPENQQGES 238

Query: 802 QQEPLDPIIDQGPSKRMK 855
           QQ   DPIIDQGP+KRMK
Sbjct: 239 QQPSADPIIDQGPAKRMK 256


>emb|CBI36012.3| unnamed protein product [Vitis vinifera]
          Length = 226

 Score =  349 bits (896), Expect = 6e-94
 Identities = 177/225 (78%), Positives = 187/225 (83%), Gaps = 2/225 (0%)
 Frame = +1

Query: 187 MTGICFRDQLWLNSYPLDRNLVFDYFALSPFYDWTCNNEQIRMRSIHPLDISHLSKMTGI 366
           MTGICFRDQLWLNSYPLDRNLVFDYFALSPFYDWTCNNEQ+R+RSIHPLD SHLSKMTG 
Sbjct: 1   MTGICFRDQLWLNSYPLDRNLVFDYFALSPFYDWTCNNEQLRLRSIHPLDTSHLSKMTGT 60

Query: 367 EYMLNEVMEPHLFVIRKQKRESPEKVTPMLTYYVMDGSIYQAPQLCNVFAARIGRALYHI 546
           EYMLNEVMEPHLFVIRKQKR+ PEKVTPMLTYY++DGSIYQAPQLCNVF ARIGRALYHI
Sbjct: 61  EYMLNEVMEPHLFVIRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFTARIGRALYHI 120

Query: 547 SKSFTTAASKLEKIGFVDGEAESAAFESKVEKELIDFKEVRRVDHILASLQRKL-QXXXX 723
           SK+FTTAASKLEKIG+VD E E+ A ESKV KE IDFKEV RVD ILASLQRKL      
Sbjct: 121 SKAFTTAASKLEKIGYVDAENENPALESKVGKETIDFKEVMRVDQILASLQRKLPPAPPP 180

Query: 724 XXXXXXXXXXXSAEADKSSENQQGTEQQEP-LDPIIDQGPSKRMK 855
                      +AE +K  E QQ  E Q P LDPIIDQGPSKRMK
Sbjct: 181 PQFPEGYAPPPTAEGEKGPETQQAAEPQLPALDPIIDQGPSKRMK 225