BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00010017
         (730 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276956.1| PREDICTED: DNA-directed RNA polymerase II su...   175   8e-42
ref|XP_004134242.1| PREDICTED: DNA-directed RNA polymerase II su...   174   1e-41
ref|XP_002976415.1| hypothetical protein SELMODRAFT_232741 [Sela...   173   3e-41
ref|XP_003594777.1| DNA-directed RNA polymerase II subunit RPB9 ...   171   1e-40
gb|ABA98929.1| DNA-directed RNA polymerase II 14.5 kDa polypepti...   171   1e-40

>ref|XP_002276956.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9 [Vitis
           vinifera] gi|147769002|emb|CAN66735.1| hypothetical
           protein VITISV_024186 [Vitis vinifera]
           gi|296083263|emb|CBI22899.3| unnamed protein product
           [Vitis vinifera]
          Length = 114

 Score =  175 bits (444), Expect = 8e-42
 Identities = 81/131 (61%), Positives = 95/131 (72%)
 Frame = -2

Query: 603 MSSMKFCSECDNLLYPTEDKKQNILVYVCRNCHHQETLKSHLDNVEKTCPKEDAVNNCII 424
           MS+MKFC EC+N+LYP ED++Q IL+Y CRNC HQE                 A NNC+ 
Sbjct: 1   MSTMKFCRECNNILYPKEDREQKILLYACRNCDHQEV----------------AENNCV- 43

Query: 423 YKRVINHCAGNCTQMLQDVATDPTLPRTKSVRCARCNHGEAVFFQASVEGEKSMPLFFVC 244
           Y+  I+H  G  TQ+LQDVA DPTLPRTKSVRCA+CNHGEAVFFQA+  GE+ M LFFVC
Sbjct: 44  YRNEIHHSVGERTQVLQDVAADPTLPRTKSVRCAQCNHGEAVFFQATARGEEGMTLFFVC 103

Query: 243 CKPNCGHRWRD 211
           C PNCG+RWRD
Sbjct: 104 CNPNCGYRWRD 114


>ref|XP_004134242.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like
           [Cucumis sativus] gi|449517969|ref|XP_004166016.1|
           PREDICTED: DNA-directed RNA polymerase II subunit
           RPB9-like [Cucumis sativus]
          Length = 114

 Score =  174 bits (442), Expect = 1e-41
 Identities = 80/131 (61%), Positives = 94/131 (71%)
 Frame = -2

Query: 603 MSSMKFCSECDNLLYPTEDKKQNILVYVCRNCHHQETLKSHLDNVEKTCPKEDAVNNCII 424
           MS+MKFC EC+N+LYP ED+ + IL+Y CRNC HQE                 A NNC+ 
Sbjct: 1   MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEV----------------ADNNCV- 43

Query: 423 YKRVINHCAGNCTQMLQDVATDPTLPRTKSVRCARCNHGEAVFFQASVEGEKSMPLFFVC 244
           Y+  I+H  G  TQ+LQDVA DPTLPRTK+VRCA+CNHGEAVFFQA+  GE+ M LFFVC
Sbjct: 44  YRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVC 103

Query: 243 CKPNCGHRWRD 211
           C PNCGHRWRD
Sbjct: 104 CNPNCGHRWRD 114


>ref|XP_002976415.1| hypothetical protein SELMODRAFT_232741 [Selaginella moellendorffii]
           gi|302811122|ref|XP_002987251.1| hypothetical protein
           SELMODRAFT_125489 [Selaginella moellendorffii]
           gi|300145148|gb|EFJ11827.1| hypothetical protein
           SELMODRAFT_125489 [Selaginella moellendorffii]
           gi|300156045|gb|EFJ22675.1| hypothetical protein
           SELMODRAFT_232741 [Selaginella moellendorffii]
          Length = 115

 Score =  173 bits (439), Expect = 3e-41
 Identities = 80/131 (61%), Positives = 94/131 (71%)
 Frame = -2

Query: 603 MSSMKFCSECDNLLYPTEDKKQNILVYVCRNCHHQETLKSHLDNVEKTCPKEDAVNNCII 424
           MS+MKFC EC+N+LYP ED+ Q IL+Y CRNC HQE                 A NNC+ 
Sbjct: 1   MSTMKFCRECNNILYPKEDRDQKILLYACRNCDHQEV----------------ADNNCV- 43

Query: 423 YKRVINHCAGNCTQMLQDVATDPTLPRTKSVRCARCNHGEAVFFQASVEGEKSMPLFFVC 244
           Y+  ++H AG  TQ+LQDVA+DPTLPRTKSVRC RC HGEAVFFQA+  GE+ M LFFVC
Sbjct: 44  YRNEVHHSAGERTQVLQDVASDPTLPRTKSVRCVRCKHGEAVFFQATTRGEEGMTLFFVC 103

Query: 243 CKPNCGHRWRD 211
           C PNCG+RWRD
Sbjct: 104 CNPNCGYRWRD 114


>ref|XP_003594777.1| DNA-directed RNA polymerase II subunit RPB9 [Medicago truncatula]
           gi|87240462|gb|ABD32320.1| DNA-directed RNA polymerase,
           subunit C11/M/9 [Medicago truncatula]
           gi|217075262|gb|ACJ85991.1| unknown [Medicago
           truncatula] gi|355483825|gb|AES65028.1| DNA-directed RNA
           polymerase II subunit RPB9 [Medicago truncatula]
           gi|388497558|gb|AFK36845.1| unknown [Medicago
           truncatula]
          Length = 114

 Score =  171 bits (433), Expect = 1e-40
 Identities = 77/131 (58%), Positives = 92/131 (70%)
 Frame = -2

Query: 603 MSSMKFCSECDNLLYPTEDKKQNILVYVCRNCHHQETLKSHLDNVEKTCPKEDAVNNCII 424
           MS+MKFC EC+N+LYP ED++Q IL+Y CRNC HQE                 A +N  +
Sbjct: 1   MSTMKFCRECNNILYPKEDREQKILLYACRNCDHQE-----------------AADNFCV 43

Query: 423 YKRVINHCAGNCTQMLQDVATDPTLPRTKSVRCARCNHGEAVFFQASVEGEKSMPLFFVC 244
           Y+  I+H     TQ+LQDVA DPTLPRTK+VRC +CNHGEAVFFQA+  GE+ M LFFVC
Sbjct: 44  YRNEIHHSVAERTQVLQDVAADPTLPRTKAVRCVQCNHGEAVFFQATARGEEGMTLFFVC 103

Query: 243 CKPNCGHRWRD 211
           C PNCGHRWRD
Sbjct: 104 CNPNCGHRWRD 114


>gb|ABA98929.1| DNA-directed RNA polymerase II 14.5 kDa polypeptide, putative,
           expressed [Oryza sativa Japonica Group]
           gi|125537020|gb|EAY83508.1| hypothetical protein
           OsI_38722 [Oryza sativa Indica Group]
           gi|125579719|gb|EAZ20865.1| hypothetical protein
           OsJ_36504 [Oryza sativa Japonica Group]
          Length = 114

 Score =  171 bits (433), Expect = 1e-40
 Identities = 79/131 (60%), Positives = 94/131 (71%)
 Frame = -2

Query: 603 MSSMKFCSECDNLLYPTEDKKQNILVYVCRNCHHQETLKSHLDNVEKTCPKEDAVNNCII 424
           MS+MKFC EC+N+LYP ED+ Q IL+Y CRNC HQE                 A NNC+ 
Sbjct: 1   MSTMKFCRECNNILYPKEDRDQKILLYACRNCDHQEV----------------ADNNCV- 43

Query: 423 YKRVINHCAGNCTQMLQDVATDPTLPRTKSVRCARCNHGEAVFFQASVEGEKSMPLFFVC 244
           Y+ V++H AG  TQ+LQDVA DPTLPRTK+VRCA C HGEAVFFQA+  GE+ M LFFVC
Sbjct: 44  YRNVVHHSAGEFTQVLQDVAGDPTLPRTKAVRCAVCGHGEAVFFQATARGEEGMTLFFVC 103

Query: 243 CKPNCGHRWRD 211
           C P+CGHRWR+
Sbjct: 104 CNPSCGHRWRE 114