BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00009836
         (1277 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002264696.1| PREDICTED: pentatricopeptide repeat-containi...   568   e-160
emb|CAN60200.1| hypothetical protein VITISV_039678 [Vitis vinifera]   564   e-158
ref|XP_002512558.1| pentatricopeptide repeat-containing protein,...   530   e-148
ref|XP_002306265.1| predicted protein [Populus trichocarpa] gi|2...   513   e-143
ref|XP_004146407.1| PREDICTED: pentatricopeptide repeat-containi...   506   e-141

>ref|XP_002264696.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
            mitochondrial [Vitis vinifera]
            gi|296088528|emb|CBI37519.3| unnamed protein product
            [Vitis vinifera]
          Length = 525

 Score =  568 bits (1465), Expect = e-160
 Identities = 268/400 (67%), Positives = 334/400 (83%), Gaps = 1/400 (0%)
 Frame = +2

Query: 80   ETLKPSLPSFQTSNDADMVSRILIEHHNPFHTMESSLQLNGVNLSSDLVHQTLIRLKNVS 259
            + L   LPS Q S DAD++S+IL++HHNPFH MESSLQLNG+ LS+ LVHQTL+RL+NVS
Sbjct: 38   DALSTGLPSLQPSYDADLISKILLQHHNPFHAMESSLQLNGIALSTHLVHQTLLRLRNVS 97

Query: 260  KIALGFFIWAKDHPVYRLDVVAYNLMIDILGKVRQFDVAWQLIVEMDQQSIPPTSKTFGT 439
            KIAL FF+WAKD   +  DVV+YNL+IDIL KVRQFDVAWQ I+EMDQ S+ PTS TF  
Sbjct: 98   KIALSFFLWAKDQAHHSHDVVSYNLIIDILAKVRQFDVAWQFIIEMDQNSLEPTSTTFRI 157

Query: 440  LIRRLIAAGRTRQAIRAFDDMESFVEKEVXXXXXXXXXXXXCKYGYVKVATEIFNKRKFR 619
            LIRR ++AG TRQA+RAFDDM  FVEK+              KYGYVK+A++IFN+RKF+
Sbjct: 158  LIRRSVSAGLTRQAVRAFDDMSCFVEKDADSDDFCYLLDTLSKYGYVKLASQIFNQRKFK 217

Query: 620  FKPDTKIYTVLIYGWCKLNRTQMAERFFREIMECGLEPNVVTYNVMLNGICRKSSLHPEE 799
            F+ + K+YT+LIYGWCK+NR  +AER   E++E G+E NVVTYNV+LNGICR++SLHP++
Sbjct: 218  FEANAKMYTILIYGWCKINRVSIAERLLGEMVERGIEANVVTYNVLLNGICRRASLHPDD 277

Query: 800  RFETVIRAAEDLFEKMQRRGIEPDVTSYSIVLHVYSRAHKPDLSLDKLNLMKVKGIFPTV 979
            RFE  IR AE + ++M+++GIEPDVTSYSIV+HVYSRAHKP+L+LDKL +MK KGI+PTV
Sbjct: 278  RFERTIRDAEKVLDEMRQKGIEPDVTSYSIVIHVYSRAHKPELTLDKLRMMKDKGIWPTV 337

Query: 980  ATYTSVIKCLCSCGRIEDAEKLLDEMVSNGVSPSPATYNCFFKEYRGRKDANNALKLYRK 1159
            ATYTSV+KCLCSCGR+EDAE+L+ +MV +GVSPS ATYNCFFKEYRGRKD++NAL+LYRK
Sbjct: 338  ATYTSVVKCLCSCGRLEDAEELVSDMVKDGVSPSAATYNCFFKEYRGRKDSDNALRLYRK 397

Query: 1160 MGES-SCMPSMHTYNILVGMFAKLNQMEVMEEIWNDMKAT 1276
            M E  SC+P MHTYNILVGMF KLN+ME+++EIW+DMK +
Sbjct: 398  MKEEYSCLPDMHTYNILVGMFVKLNRMEIVQEIWDDMKTS 437


>emb|CAN60200.1| hypothetical protein VITISV_039678 [Vitis vinifera]
          Length = 525

 Score =  564 bits (1454), Expect = e-158
 Identities = 267/400 (66%), Positives = 331/400 (82%), Gaps = 1/400 (0%)
 Frame = +2

Query: 80   ETLKPSLPSFQTSNDADMVSRILIEHHNPFHTMESSLQLNGVNLSSDLVHQTLIRLKNVS 259
            + L   LPS Q S DAD++S+IL++HHNPFH MESSLQLNG+ LS+ LVHQTL+RL+NVS
Sbjct: 38   DALSTGLPSLQPSYDADLISKILLQHHNPFHAMESSLQLNGIALSTHLVHQTLLRLRNVS 97

Query: 260  KIALGFFIWAKDHPVYRLDVVAYNLMIDILGKVRQFDVAWQLIVEMDQQSIPPTSKTFGT 439
            KIAL FF+WAKD   +  DVV+YNL+IDIL KVRQFDVAWQ I+EMDQ S+ PTS TF  
Sbjct: 98   KIALSFFLWAKDQAHHSHDVVSYNLIIDILAKVRQFDVAWQFIIEMDQNSLEPTSTTFRI 157

Query: 440  LIRRLIAAGRTRQAIRAFDDMESFVEKEVXXXXXXXXXXXXCKYGYVKVATEIFNKRKFR 619
            LIRR ++AG TRQA+RAFDDM  FVEK+              KYGYVK+A++IFN+RKF+
Sbjct: 158  LIRRSVSAGLTRQAVRAFDDMSCFVEKDADSDDFCYLLDTLSKYGYVKLASQIFNQRKFK 217

Query: 620  FKPDTKIYTVLIYGWCKLNRTQMAERFFREIMECGLEPNVVTYNVMLNGICRKSSLHPEE 799
            F+ + K+YT+LIYGWCK+NR  +AER   E++E G+  NVVTYNV+LNGICR +SLHP++
Sbjct: 218  FEANAKMYTILIYGWCKINRVSIAERLLGEMVERGJXANVVTYNVLLNGICRXASLHPDD 277

Query: 800  RFETVIRAAEDLFEKMQRRGIEPDVTSYSIVLHVYSRAHKPDLSLDKLNLMKVKGIFPTV 979
            RFE  IR AE + ++M++ GIEPDVTSYSIV+HVYSRAHKP+L+LDKL +MK KGI+PTV
Sbjct: 278  RFERTIRDAEKVLDEMRQXGIEPDVTSYSIVIHVYSRAHKPELTLDKLRMMKDKGIWPTV 337

Query: 980  ATYTSVIKCLCSCGRIEDAEKLLDEMVSNGVSPSPATYNCFFKEYRGRKDANNALKLYRK 1159
            ATYTSV+KCLCSCGR+EDAE+L+ +MV +GVSPS ATYNCFFKEYRGRKD++NAL+LYRK
Sbjct: 338  ATYTSVVKCLCSCGRLEDAEELVSDMVKDGVSPSAATYNCFFKEYRGRKDSDNALRLYRK 397

Query: 1160 MGES-SCMPSMHTYNILVGMFAKLNQMEVMEEIWNDMKAT 1276
            M E  SC+P MHTYNILVGMF KLN+ME+++EIW+DMK +
Sbjct: 398  MKEEYSCLPDMHTYNILVGMFVKLNRMEIVQEIWDDMKTS 437


>ref|XP_002512558.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223548519|gb|EEF50010.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 511

 Score =  530 bits (1366), Expect = e-148
 Identities = 255/395 (64%), Positives = 318/395 (80%), Gaps = 1/395 (0%)
 Frame = +2

Query: 95   SLPSFQTSNDADMVSRILIEHHNPFHTMESSLQLNGVNLSSDLVHQTLIRLKNVSKIALG 274
            SLPS + SNDA++VS IL+ HHNPFH MESSLQL+G+ LSS L+HQTL+RL++ SKIAL 
Sbjct: 29   SLPSLEPSNDAEIVSEILLNHHNPFHAMESSLQLHGITLSSSLLHQTLLRLRHNSKIALS 88

Query: 275  FFIWAKDHPVYRLDVVAYNLMIDILGKVRQFDVAWQLIVEMDQQSIPPTSKTFGTLIRRL 454
            FF ++   P   ++   YNL+IDIL KVRQFDV+WQLI++MDQ ++ P S TF  LIRRL
Sbjct: 89   FFHYSLSLPSSSVNTTTYNLIIDILSKVRQFDVSWQLIIQMDQNNLQPNSHTFLILIRRL 148

Query: 455  IAAGRTRQAIRAFDDMESFVEKEVXXXXXXXXXXXXCKYGYVKVATEIFNKRKFRFKPDT 634
            I+AG TRQAIRAFDDMESF+ + V            CKYGY+KVA E+FNKRKFRF P+ 
Sbjct: 149  ISAGFTRQAIRAFDDMESFIAETVNQTHFCFLLDTLCKYGYIKVAVEVFNKRKFRFLPNV 208

Query: 635  KIYTVLIYGWCKLNRTQMAERFFREIMECGLEPNVVTYNVMLNGICRKSSLHPEERFETV 814
            +IYTVLIYGWCK+ R  MAERF RE+ E G+E NVVTYNV+L+GICR++ L PE RFE  
Sbjct: 209  RIYTVLIYGWCKIGRIDMAERFIREMDEMGIEANVVTYNVLLDGICRRAKLQPEGRFERT 268

Query: 815  IRAAEDLFEKMQRRGIEPDVTSYSIVLHVYSRAHKPDLSLDKLNLMKVKGIFPTVATYTS 994
            I  A+ +F++M+++GIEPDVTS+SI+LHVYSRAHKP L++DKL LM+  GI PTVATYTS
Sbjct: 269  IMKADKVFDEMRQKGIEPDVTSFSILLHVYSRAHKPQLTVDKLKLMEEMGICPTVATYTS 328

Query: 995  VIKCLCSCGRIEDAEKLLDEMVSNGVSPSPATYNCFFKEYRGRKDANNALKLYRKM-GES 1171
            V+KCLCSCGRI+DAE+LL++MV NGVSP+ ATYNCFFKEYRGRKD   ALKLYRK+  E+
Sbjct: 329  VLKCLCSCGRIDDAEELLEQMVRNGVSPNAATYNCFFKEYRGRKDPETALKLYRKIRQEN 388

Query: 1172 SCMPSMHTYNILVGMFAKLNQMEVMEEIWNDMKAT 1276
             C PS+HTYNIL+GMF KLN+  ++ EIWND++++
Sbjct: 389  LCDPSVHTYNILLGMFMKLNRFNIVNEIWNDLRSS 423



 Score = 65.9 bits (159), Expect = 2e-08
 Identities = 64/299 (21%), Positives = 127/299 (42%), Gaps = 12/299 (4%)
 Frame = +2

Query: 314  DVVAYNLMIDILGKVRQFDVAWQLIVEMDQQSIPPTSKTFGTLI------RRLIAAGRTR 475
            +V  Y ++I    K+ + D+A + I EMD+  I     T+  L+       +L   GR  
Sbjct: 207  NVRIYTVLIYGWCKIGRIDMAERFIREMDEMGIEANVVTYNVLLDGICRRAKLQPEGRFE 266

Query: 476  QAI----RAFDDM-ESFVEKEVXXXXXXXXXXXXCKYGYVKVATEIFNKRKFRFKPDTKI 640
            + I    + FD+M +  +E +V                 + V  ++    +    P    
Sbjct: 267  RTIMKADKVFDEMRQKGIEPDVTSFSILLHVYSRAHKPQLTV-DKLKLMEEMGICPTVAT 325

Query: 641  YTVLIYGWCKLNRTQMAERFFREIMECGLEPNVVTYNVMLNGICRKSSLHPEERFETVIR 820
            YT ++   C   R   AE    +++  G+ PN  TYN      C        +  ET ++
Sbjct: 326  YTSVLKCLCSCGRIDDAEELLEQMVRNGVSPNAATYN------CFFKEYRGRKDPETALK 379

Query: 821  AAEDLFEKMQRRGI-EPDVTSYSIVLHVYSRAHKPDLSLDKLNLMKVKGIFPTVATYTSV 997
                L+ K+++  + +P V +Y+I+L ++ + ++ ++  +  N ++  G  P + +YT +
Sbjct: 380  ----LYRKIRQENLCDPSVHTYNILLGMFMKLNRFNIVNEIWNDLRSSGSGPDLDSYTLL 435

Query: 998  IKCLCSCGRIEDAEKLLDEMVSNGVSPSPATYNCFFKEYRGRKDANNALKLYRKMGESS 1174
            +  LC   + + A +   EM+  G+ P  AT+   +             +L +K+ E S
Sbjct: 436  VHGLCEKQKWQKACQFFVEMIEKGLLPQKATFEMLYAGLIQSNMLRTWRRLKKKLDEES 494


>ref|XP_002306265.1| predicted protein [Populus trichocarpa] gi|222855714|gb|EEE93261.1|
            predicted protein [Populus trichocarpa]
          Length = 548

 Score =  513 bits (1321), Expect = e-143
 Identities = 266/445 (59%), Positives = 326/445 (73%), Gaps = 23/445 (5%)
 Frame = +2

Query: 11   LLSL---TSPDSNDLSTSSELGLGFSETLKPSLPSFQTSNDADMVSRILIEHHNPFHTME 181
            LLSL   +S  +++ S+ ++     ++TL   LP+ Q SNDAD++S+IL+ HHNPFH ME
Sbjct: 19   LLSLRFFSSIQNHNFSSDNDAFSPRNDTL---LPTLQPSNDADLLSQILLHHHNPFHAME 75

Query: 182  SSLQLNGVNLSSDLVHQTLIRLKNVSKIALGFFIWAKDHPVYRLD--------------- 316
            SSLQL G++L+  L+HQTL+RL++ SKIAL  F  +   P    D               
Sbjct: 76   SSLQLPGISLTPSLLHQTLLRLRHNSKIALSLFHHSLSLPPTSTDNPPTSTGTSTTSADS 135

Query: 317  ----VVAYNLMIDILGKVRQFDVAWQLIVEMDQQSIPPTSKTFGTLIRRLIAAGRTRQAI 484
                 V YNLMIDIL KVRQFDV WQLIVEMDQ+++ PTS+TF  LIRRL+AAG TRQAI
Sbjct: 136  STATTVTYNLMIDILAKVRQFDVCWQLIVEMDQRNVKPTSETFFVLIRRLVAAGLTRQAI 195

Query: 485  RAFDDMESFVEKEVXXXXXXXXXXXXCKYGYVKVATEIFNKRKFRFKPDTKIYTVLIYGW 664
            RAFDDMESFV + V            CKYGYVKV  EIFNKRK RF P+ K+YTVLIYGW
Sbjct: 196  RAFDDMESFVSEPVNETHFCFLLDTLCKYGYVKVGVEIFNKRKHRFSPNVKMYTVLIYGW 255

Query: 665  CKLNRTQMAERFFREIMECGLEPNVVTYNVMLNGICRKSSLHPEERFETVIRAAEDLFEK 844
            CK+ R  MAERF +E  E G+E  VVTYNV+LNGICR++SLHPE RFE  I  AE+LF++
Sbjct: 256  CKIGRIDMAERFLKETGERGIEATVVTYNVLLNGICRRASLHPESRFERTITLAENLFDE 315

Query: 845  MQRRGIEPDVTSYSIVLHVYSRAHKPDLSLDKLNLMKVKGIFPTVATYTSVIKCLCSCGR 1024
            M+ RGIEPDVTS+SIVLHVYSRAHKP+L+LDKL LMK KGI P+V TYTSV+KCLCSCGR
Sbjct: 316  MRERGIEPDVTSFSIVLHVYSRAHKPELTLDKLKLMKEKGICPSVVTYTSVVKCLCSCGR 375

Query: 1025 IEDAEKLLDEMVSNGVSPSPATYNCFFKEYRGRKDANNALKLYRKMGESSC-MPSMHTYN 1201
            IEDAE+LL EMV NGVS +  TYNCFFKEY GRKDA +ALKLY+KM E       +H+YN
Sbjct: 376  IEDAEELLGEMVRNGVSRTAVTYNCFFKEYMGRKDAESALKLYKKMREDGLGSLGLHSYN 435

Query: 1202 ILVGMFAKLNQMEVMEEIWNDMKAT 1276
            IL+ MF  LN+++++ EIW D+K++
Sbjct: 436  ILLRMFMMLNRLDIVNEIWEDLKSS 460



 Score = 60.8 bits (146), Expect = 7e-07
 Identities = 66/316 (20%), Positives = 123/316 (38%), Gaps = 12/316 (3%)
 Frame = +2

Query: 263  IALGFFIWAKDHPVYRLDVVAYNLMIDILGKVRQFDVAWQLIVEMDQQSIPPTSKTFGTL 442
            + +G  I+ K    +  +V  Y ++I    K+ + D+A + + E  ++ I  T  T+  L
Sbjct: 227  VKVGVEIFNKRKHRFSPNVKMYTVLIYGWCKIGRIDMAERFLKETGERGIEATVVTYNVL 286

Query: 443  IRRLIAAGRTRQAIR----------AFDDM-ESFVEKEVXXXXXXXXXXXXCKYGYVKVA 589
            +  +          R           FD+M E  +E +V                 + + 
Sbjct: 287  LNGICRRASLHPESRFERTITLAENLFDEMRERGIEPDVTSFSIVLHVYSRAHKPELTLD 346

Query: 590  TEIFNKRKFRFKPDTKIYTVLIYGWCKLNRTQMAERFFREIMECGLEPNVVTYNVMLNGI 769
                 K K    P    YT ++   C   R + AE    E++  G+    VTYN      
Sbjct: 347  KLKLMKEK-GICPSVVTYTSVVKCLCSCGRIEDAEELLGEMVRNGVSRTAVTYNCFFKEY 405

Query: 770  CRKSSLHPEERFETVIRAAEDLFEKMQRRGIEP-DVTSYSIVLHVYSRAHKPDLSLDKLN 946
              +              +A  L++KM+  G+    + SY+I+L ++   ++ D+  +   
Sbjct: 406  MGRKDAE----------SALKLYKKMREDGLGSLGLHSYNILLRMFMMLNRLDIVNEIWE 455

Query: 947  LMKVKGIFPTVATYTSVIKCLCSCGRIEDAEKLLDEMVSNGVSPSPATYNCFFKEYRGRK 1126
             +K  G+ P + +YT +I  LC   +  +A K   EM+  G+ P   T+   +K      
Sbjct: 456  DLKSSGLGPDLDSYTMLIHGLCEKEKWREACKFFVEMIEKGLLPQKVTFETLYKGLIQSD 515

Query: 1127 DANNALKLYRKMGESS 1174
                  +L +K+ E S
Sbjct: 516  MLRTWRRLKKKLDEES 531


>ref|XP_004146407.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
            mitochondrial-like [Cucumis sativus]
            gi|449523938|ref|XP_004168980.1| PREDICTED:
            pentatricopeptide repeat-containing protein At2g13420,
            mitochondrial-like [Cucumis sativus]
          Length = 506

 Score =  506 bits (1304), Expect = e-141
 Identities = 246/396 (62%), Positives = 305/396 (77%), Gaps = 1/396 (0%)
 Frame = +2

Query: 86   LKPSLPSFQTSNDADMVSRILIEHHNPFHTMESSLQLNGVNLSSDLVHQTLIRLKNVSKI 265
            L   LP  Q S DAD+VS+IL+ HHNPFH+MESSLQL+ ++ SS L+ QTL+RL + SKI
Sbjct: 25   LSSLLPQIQPSKDADLVSQILLHHHNPFHSMESSLQLHSISFSSHLLDQTLLRLTHHSKI 84

Query: 266  ALGFFIWAKDHPVYRLDVVAYNLMIDILGKVRQFDVAWQLIVEMDQQSIPPTSKTFGTLI 445
            AL FF +A   P   +   +YN+++DIL KVRQFD AW LI++MD +     + TF  LI
Sbjct: 85   ALSFFDYANSLPSNPISTTSYNILLDILAKVRQFDAAWHLILQMDHKG----TDTFLLLI 140

Query: 446  RRLIAAGRTRQAIRAFDDMESFVEKEVXXXXXXXXXXXXCKYGYVKVATEIFNKRKFRFK 625
            RRLI++GRTRQAIRAFDD+E     +V            CKYGYVKVA E+FNKRK  F 
Sbjct: 141  RRLISSGRTRQAIRAFDDIEGLTGNKVGIDDFCYLLDVLCKYGYVKVAVEVFNKRKEEFG 200

Query: 626  PDTKIYTVLIYGWCKLNRTQMAERFFREIMECGLEPNVVTYNVMLNGICRKSSLHPEERF 805
             D KIYT+LIYGWCK+ R +MAERF ++++E G+EPNVVTYNV+LNG+CR++SLHPE RF
Sbjct: 201  VDVKIYTILIYGWCKIGRFEMAERFLKDMVERGIEPNVVTYNVLLNGVCRRASLHPEGRF 260

Query: 806  ETVIRAAEDLFEKMQRRGIEPDVTSYSIVLHVYSRAHKPDLSLDKLNLMKVKGIFPTVAT 985
            E  IR AE +F++M++RGIEPDVTS+SIVLHVYSRAHKP+LSLDKL  MK  GI PTVAT
Sbjct: 261  EKTIRHAEKVFDEMRKRGIEPDVTSFSIVLHVYSRAHKPELSLDKLKQMKELGISPTVAT 320

Query: 986  YTSVIKCLCSCGRIEDAEKLLDEMVSNGVSPSPATYNCFFKEYRGRKDANNALKLYRKMG 1165
            YTSVIKCLCSCGR+ED E L++EMV +G+SPSP TYNCFFKEYRGRKD   AL+LY+KM 
Sbjct: 321  YTSVIKCLCSCGRLEDGENLIEEMVRSGISPSPTTYNCFFKEYRGRKDGAGALRLYKKMR 380

Query: 1166 ESS-CMPSMHTYNILVGMFAKLNQMEVMEEIWNDMK 1270
            E   C PS+HTYNIL+ +F  L++ E ++E+WNDMK
Sbjct: 381  EDCLCAPSLHTYNILLALFLNLDKKETLKELWNDMK 416