BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00009375
         (1434 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...   539   e-151
gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa...   532   e-148
ref|XP_002311536.1| rna-dependent RNA polymerase [Populus tricho...   530   e-148
emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]       526   e-147
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      522   e-146

>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score =  539 bits (1388), Expect = e-151
 Identities = 271/430 (63%), Positives = 321/430 (74%), Gaps = 9/430 (2%)
 Frame = -3

Query: 1432 ELRKKSRIYIPDGRSLMGCLDETRTLEYGQVFVQVSRIGRKQDQYNA--FRRGGADQSTR 1259
            ELR K+RI++P+GRS+MGCLDETRTLEYG+VFVQ+S  G +Q   ++  FR  G+     
Sbjct: 690  ELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFRGSGSHHDNF 749

Query: 1258 IVEGTVVVAKNPCLHPGDVRVLRAVNVLDLHHMRDCVVFPQKGIRPHPNECSGSDLDGDI 1079
            I+EG +VVAKNPCLHPGDVRVL AVNV  LHHM DCVVFPQKG RPHPNECSGSDLDGDI
Sbjct: 750  ILEGKIVVAKNPCLHPGDVRVLWAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDI 809

Query: 1078 YFVCWDPDLIPPRQVEPMDYTPAPPAVVDHDVTMEEVHEYFTNYMLNDSLGMIANAHTAF 899
            YFVCWD DLIPP+Q+ PMDYTPAP  V+DHDV +EEV EYFTNY++NDSLG+IANAHT F
Sbjct: 810  YFVCWDRDLIPPQQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIVNDSLGIIANAHTVF 869

Query: 898  ADKEPLMAESDACLELASLFSIAVDFPKTGVPAEIPSHLRVRKYPDFMEKFDKPTYESQR 719
            ADKE   A  D C ELA LFSIAVDFPKTGVPAEIP +LRV++YPDFMEK DKPTYESQ 
Sbjct: 870  ADKEYDKAYCDPCTELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYESQS 929

Query: 718  VIGKLFREVKGIVPQRSCI------VSKKFYDYDMEFDGFKNYLGNAFRCKEKYDLQLGK 557
            VIGKLFREVK I P    I      V+++ YD DME  GF++Y+ +AF  K +YD +LG 
Sbjct: 930  VIGKLFREVKDIAPHNCNIRSFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGN 989

Query: 556  LMDYYGFKTEAELLARGMVKASKSFNRKQDEDPIGMAVRSLRNDARTWFEEKGINXXXXX 377
            LMDYYG KTE+E+L+  +++ SKSF+R++D + IG+AV+SLR +ARTWF + G       
Sbjct: 990  LMDYYGIKTESEILSGSIMRMSKSFDRRKDAEAIGLAVKSLRKEARTWFNKMGSETDSEA 1049

Query: 376  XXXXXXXXXXYHVTYHPDYQGRGNGRMKWDCFLSFPWCVYDKLIHIKRENSKKKPQH-QS 200
                      YHVTYHPDY G  N  M  D FLSFPWCVYDKLIH KR+    +  H  S
Sbjct: 1050 DDVYAKASAWYHVTYHPDYWGCYNEGMDRDHFLSFPWCVYDKLIHTKRKKMSGRSLHLSS 1109

Query: 199  LEQQFKYGAR 170
            LE++   G R
Sbjct: 1110 LERRLSQGLR 1119


>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
            gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
            [Nicotiana glutinosa]
          Length = 1117

 Score =  532 bits (1370), Expect = e-148
 Identities = 262/415 (63%), Positives = 320/415 (77%), Gaps = 8/415 (1%)
 Frame = -3

Query: 1432 ELRKKSRIYIPDGRSLMGCLDETRTLEYGQVFVQVSRIGRKQ--DQYNAFRRGGADQSTR 1259
            +LR +SRI+IP+GR++MGCLDE+RTLEYGQVFVQ +  GR+Q  ++ + F   G+     
Sbjct: 690  DLRTRSRIFIPNGRTMMGCLDESRTLEYGQVFVQFTGTGRRQFYEESHPFNDSGSTNCDF 749

Query: 1258 IVEGTVVVAKNPCLHPGDVRVLRAVNVLDLHHMRDCVVFPQKGIRPHPNECSGSDLDGDI 1079
            I+EG VVVAKNPCLHPGD+RVLRAV+V  LHHM DCVVFPQKG RPHPNECSGSDLDGDI
Sbjct: 750  ILEGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDI 809

Query: 1078 YFVCWDPDLIPPRQVEPMDYTPAPPAVVDHDVTMEEVHEYFTNYMLNDSLGMIANAHTAF 899
            YFVCWDPDL+PPRQ +PMDYTPAP   +DHDVT+EEV EYFTNY++NDSLG+IANAH  F
Sbjct: 810  YFVCWDPDLVPPRQFQPMDYTPAPSTQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVF 869

Query: 898  ADKEPLMAESDACLELASLFSIAVDFPKTGVPAEIPSHLRVRKYPDFMEKFDKPTYESQR 719
            AD+EP MA SD C +LA LFSIAVDFPKTGVPAEIPS LR ++YPDFMEK DKPTY S++
Sbjct: 870  ADREPDMAMSDPCKQLAQLFSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKPDKPTYHSEK 929

Query: 718  VIGKLFREVKGIVPQRSCI------VSKKFYDYDMEFDGFKNYLGNAFRCKEKYDLQLGK 557
            VIGKLF++VK   PQ S I      V++K YD DM  +GF++Y+  AF  K +YD +LG 
Sbjct: 930  VIGKLFQKVKDKTPQASSIANFTMDVARKSYDGDMIVNGFEDYIDEAFYYKSEYDNKLGN 989

Query: 556  LMDYYGFKTEAELLARGMVKASKSFNRKQDEDPIGMAVRSLRNDARTWFEEKGINXXXXX 377
            LMDYYG KTEAE+L+ G++KASK+F+R++D D IG+AVRSLR +ARTWF+ +        
Sbjct: 990  LMDYYGIKTEAEILSGGIMKASKTFDRRKDADAIGVAVRSLRKEARTWFKRRS-----DI 1044

Query: 376  XXXXXXXXXXYHVTYHPDYQGRGNGRMKWDCFLSFPWCVYDKLIHIKRENSKKKP 212
                      YHVTYH  Y G  N  +K D F+SFPWC+YD+LI IK+  ++KKP
Sbjct: 1045 DDMLAKASAWYHVTYHHTYWGFYNEGLKRDHFISFPWCIYDQLIQIKKAKARKKP 1099


>ref|XP_002311536.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1133

 Score =  530 bits (1366), Expect = e-148
 Identities = 270/430 (62%), Positives = 322/430 (74%), Gaps = 11/430 (2%)
 Frame = -3

Query: 1432 ELRKKSRIYIPDGRSLMGCLDETRTLEYGQVFVQVS--RIGRKQDQYNAFRRGGADQSTR 1259
            ELR K+RI+IP+GRS+MGCLDETRTLE+GQVFV+ S  R     D  + F   G  Q   
Sbjct: 701  ELRTKTRIFIPNGRSMMGCLDETRTLEHGQVFVKFSGSRFRNLYDSSDMFSERGRGQCY- 759

Query: 1258 IVEGTVVVAKNPCLHPGDVRVLRAVNVLDLHHMRDCVVFPQKGIRPHPNECSGSDLDGDI 1079
            +++G+VVVAKNPCLHPGD+R+L+AV+V  LHHM DCVVFPQKG RPHPNECSGSDLDGDI
Sbjct: 760  LIKGSVVVAKNPCLHPGDLRILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDI 819

Query: 1078 YFVCWDPDLIPPRQVEPMDYTPAPPAVVDHDVTMEEVHEYFTNYMLNDSLGMIANAHTAF 899
            YFVCWDP+LIP +Q+ PMDYTP PP  +DHDVT+EEV EYFTNY++NDSLG+IANAHTA 
Sbjct: 820  YFVCWDPELIPSQQISPMDYTPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAH 879

Query: 898  ADKEPLMAESDACLELASLFSIAVDFPKTGVPAEIPSHLRVRKYPDFMEKFDKPTYESQR 719
            ADKE L A S+ C+ELA  FSIAVDFPKTGVPAEIPS+LR R+YPDFMEK DKP+YES+ 
Sbjct: 880  ADKESLKAMSEPCVELARKFSIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRN 939

Query: 718  VIGKLFREVKGIVPQRSCI------VSKKFYDYDMEFDGFKNYLGNAFRCKEKYDLQLGK 557
            VIGKLFREVK I P+ S I      V+++ YD DME DGF++Y+ +AF  K  YD +LG 
Sbjct: 940  VIGKLFREVKDIAPRTSSIRSFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGN 999

Query: 556  LMDYYGFKTEAELLARGMVKASKSFNRKQDEDPIGMAVRSLRNDARTWFEEKGINXXXXX 377
            LM+YYG KTEAELL+   +K SKSF +K+D + IGMAVRSL+ +AR+WF EKG       
Sbjct: 1000 LMEYYGIKTEAELLSGSFMKMSKSFTKKRDAEAIGMAVRSLKKEARSWFNEKGSGLDSQA 1059

Query: 376  XXXXXXXXXXYHVTYHPDYQGRGNGRMKWDCFLSFPWCVYDKLIHIKRENSKKKPQH--- 206
                      YHVTYH +Y G  N  M  D FLSFPWCVYDKLI IKR NS +  +    
Sbjct: 1060 DDVDAKASAWYHVTYHHNYWGCYNEGMNRDHFLSFPWCVYDKLIQIKRRNSARIRRSLIL 1119

Query: 205  QSLEQQFKYG 176
             S+E+QF  G
Sbjct: 1120 PSVERQFSRG 1129


>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
          Length = 1116

 Score =  526 bits (1355), Expect = e-147
 Identities = 260/415 (62%), Positives = 318/415 (76%), Gaps = 8/415 (1%)
 Frame = -3

Query: 1432 ELRKKSRIYIPDGRSLMGCLDETRTLEYGQVFVQVSRIGRKQ--DQYNAFRRGGADQSTR 1259
            +LR ++RI+IP+GR++MGCLDE+RTLEYGQVFVQ S  GR+Q  ++ + F   G+     
Sbjct: 689  DLRTRTRIFIPNGRTMMGCLDESRTLEYGQVFVQFSGAGRRQFFEESHPFNDSGSANCDF 748

Query: 1258 IVEGTVVVAKNPCLHPGDVRVLRAVNVLDLHHMRDCVVFPQKGIRPHPNECSGSDLDGDI 1079
            I++G VVVAKNPCLHPGD+RVLRAV+V  LHHM DCVVFPQKG RPHPNECSGSDLDGDI
Sbjct: 749  ILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDI 808

Query: 1078 YFVCWDPDLIPPRQVEPMDYTPAPPAVVDHDVTMEEVHEYFTNYMLNDSLGMIANAHTAF 899
            YFVCWDPDLIPPRQV+ MDYTPAP   +DHDVT+EEV EYFTNY++NDSLG+IANAH  F
Sbjct: 809  YFVCWDPDLIPPRQVQSMDYTPAPTTQLDHDVTIEEVEEYFTNYIINDSLGIIANAHVVF 868

Query: 898  ADKEPLMAESDACLELASLFSIAVDFPKTGVPAEIPSHLRVRKYPDFMEKFDKPTYESQR 719
            AD+EP MA SD C +LA LFSIAVDFPKTGVPAEIPS LR ++YPDFMEK DKPTY S++
Sbjct: 869  ADREPDMAMSDPCKQLAQLFSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKPDKPTYPSEK 928

Query: 718  VIGKLFREVKGIVPQRSCI------VSKKFYDYDMEFDGFKNYLGNAFRCKEKYDLQLGK 557
            VIGKLF++VK   PQ S I      V++K YD DM  DGF++Y+  AF  K +YD +LG 
Sbjct: 929  VIGKLFQKVKNKTPQASSIATFTRDVARKSYDSDMIVDGFEDYIDEAFYYKSEYDNKLGN 988

Query: 556  LMDYYGFKTEAELLARGMVKASKSFNRKQDEDPIGMAVRSLRNDARTWFEEKGINXXXXX 377
            LMDYYG KTEAE+L+ G++KASK+F+R++D + IG+AVR LR +AR WF+ +        
Sbjct: 989  LMDYYGIKTEAEILSGGIMKASKTFDRRKDAEAIGVAVRCLRKEARAWFKRRS-----DI 1043

Query: 376  XXXXXXXXXXYHVTYHPDYQGRGNGRMKWDCFLSFPWCVYDKLIHIKRENSKKKP 212
                      YHVTYH  Y G  N  +K D F+SFPWCVYD+LI IK+  ++K+P
Sbjct: 1044 DDMLAKASAWYHVTYHHTYWGLYNEGLKRDHFISFPWCVYDQLIQIKKAKARKRP 1098


>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  522 bits (1345), Expect = e-146
 Identities = 261/427 (61%), Positives = 313/427 (73%), Gaps = 8/427 (1%)
 Frame = -3

Query: 1432 ELRKKSRIYIPDGRSLMGCLDETRTLEYGQVFVQVSRIGRKQDQYNAFRRGGADQSTRIV 1253
            ELR K+RI++  GRS+MGCLDETRTL YGQVFVQ S              G   +   IV
Sbjct: 694  ELRTKARIFVQKGRSMMGCLDETRTLNYGQVFVQFS--------------GSRSERRFIV 739

Query: 1252 EGTVVVAKNPCLHPGDVRVLRAVNVLDLHHMRDCVVFPQKGIRPHPNECSGSDLDGDIYF 1073
            +G V+VAKNPCLHPGDVRVLRAVNV DLHHM DCVVFPQKG RPHPNECSGSDLDGD+YF
Sbjct: 740  QGKVIVAKNPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYF 799

Query: 1072 VCWDPDLIPPRQVEPMDYTPAPPAVVDHDVTMEEVHEYFTNYMLNDSLGMIANAHTAFAD 893
            VCWDP+LIP +Q++PMDY+PA    +DH+VT+EE+ EYFTNY++NDSLG+I+NAHTAFAD
Sbjct: 800  VCWDPELIPYKQIDPMDYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFAD 859

Query: 892  KEPLMAESDACLELASLFSIAVDFPKTGVPAEIPSHLRVRKYPDFMEKFDKPTYESQRVI 713
            +EP  A S  CLELA LFSIAVDFPKTGVPAEIP  LRV++YPDFMEK DKP+Y+S  VI
Sbjct: 860  REPDKAMSRPCLELAKLFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPSYQSHNVI 919

Query: 712  GKLFREVKGIVPQRSCI------VSKKFYDYDMEFDGFKNYLGNAFRCKEKYDLQLGKLM 551
            GKLFREVK + P    I        ++FYD DME +GF++Y+ +AF  K KYD +LG LM
Sbjct: 920  GKLFREVKNLAPNECSIKFLTREKMQRFYDPDMEVEGFEDYIDDAFFHKSKYDYKLGNLM 979

Query: 550  DYYGFKTEAELLARGMVKASKSFNRKQDEDPIGMAVRSLRNDARTWFEEKGINXXXXXXX 371
            DYYG KTEAE+L  G++K S+SF +K+D + I MAVRSLR +AR+WF EKG         
Sbjct: 980  DYYGVKTEAEILGGGIMKMSRSFTKKRDAEAISMAVRSLRKEARSWFNEKGSELDEEIDD 1039

Query: 370  XXXXXXXXYHVTYHPDYQGRGNGRMKWDCFLSFPWCVYDKLIHIKRENS--KKKPQHQSL 197
                    Y+VTYHP Y G+ N  M  D FLSFPWCVYDKLI IK+E +  ++     SL
Sbjct: 1040 AYAKASAWYYVTYHPSYWGQYNEGMNRDHFLSFPWCVYDKLIQIKKEKAAVREALDLSSL 1099

Query: 196  EQQFKYG 176
            E +F+ G
Sbjct: 1100 EHRFQRG 1106