BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00009294
         (1509 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCH50966.1| T4.5 [Malus x robusta]                                206   2e-50
gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]              182   2e-43
emb|CAN66932.1| hypothetical protein VITISV_030313 [Vitis vinifera]   153   1e-34
ref|XP_002324404.1| predicted protein [Populus trichocarpa] gi|2...   145   2e-32
gb|AAK51235.1|AF287471_1 polyprotein [Arabidopsis thaliana]           144   6e-32

>emb|CCH50966.1| T4.5 [Malus x robusta]
          Length = 1670

 Score =  206 bits (523), Expect = 2e-50
 Identities = 135/403 (33%), Positives = 206/403 (51%), Gaps = 6/403 (1%)
 Frame = -1

Query: 1269 LLSNSIMATQNFNLNIQNITNLIPIKLSKDNYVLWKSLFLPVLRSFDLHGLVDGTDVCPN 1090
            +LSN  + T    ++I N+  ++P KL++ NY+ W+SLF+PVL+ F L GLV+G D+CP 
Sbjct: 253  VLSNPPIMTLG-TISITNVAGMVPTKLNRQNYITWRSLFIPVLKRFKLIGLVNGEDLCPP 311

Query: 1089 KFLQGADGVTTQVDPKYLEWIKKDQNLLIMMNATLSEAVLPYVVGMQTSFSLWNMLSARF 910
             F++   G T   +  +  W ++DQ L+I +N+TLS+ +LP  +GM+ S SLW  L  RF
Sbjct: 312  PFVRDPSG-TCVPNASFETWCERDQILMIWINSTLSKDLLPLTIGMEDSRSLWQSLERRF 370

Query: 909  SSVSRSHVIQLKSKLHNLKKGSLSLTDYLQQIKEIVDNLAIAGXXXXXXXXXXHILNGLP 730
            S  SR+HV  L+SK+  + KG  S+TD+L  IKEI + LA AG          +IL+GLP
Sbjct: 371  SGASRTHVHSLRSKIQTIHKGDSSMTDFLNSIKEISNKLAAAGEPLSESDLVAYILSGLP 430

Query: 729  AEWDSFATSVRIRNPPVSAXXXXXXXXXXXXXXXXXSQALLPTPTDSMNHAFFTQHSGFK 550
             E++SF  S+  RN  V+A                       T   S ++A F  ++  +
Sbjct: 431  DEYESFVDSIETRNESVTADELHGLLLSKEISLQKR-----KTRASSSSNAPFHAYAA-Q 484

Query: 549  TSSNRGNFSSGNAPHRDXXXXXXXXXXXXXXXXXXGQYSTAFGG------HTSNSGQFNG 388
            +S++ G+F+ GN+  R                      +  FGG      H +NSG   G
Sbjct: 485  SSTHVGHFNKGNSRGR-------------FHNRNRYTQNRNFGGNKPHNWHANNSGGILG 531

Query: 387  SSFHQDSQNGRSRNFSTTNGRPICQICQKVGHLAIDCYDRMNYAYHGKIAPQKLAAMVAA 208
            +   +      S +  +      CQ+C + GH A  C     +A       Q   AM A 
Sbjct: 532  AGPSRQPAGPSSSSGCSVQ----CQLCLQYGHWAPMCNRLSQFA-----QSQSPTAMSAM 582

Query: 207  SSSNSTTPWFVDSGATNHVTSNNANLTNQHEYKGNDKVTLGDG 79
            +SS S + W  DSGA++HVT + + L +   Y GND++ +GDG
Sbjct: 583  TSSASPSYWLTDSGASHHVTPDPSALNSAIPYSGNDQLFVGDG 625


>gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]
          Length = 1384

 Score =  182 bits (463), Expect = 2e-43
 Identities = 119/388 (30%), Positives = 192/388 (49%), Gaps = 2/388 (0%)
 Frame = -1

Query: 1251 MATQNFNLNIQNITNLIPIKLSKDNYVLWKSLFLPVLRSFDLHGLVDGTDVCPNKFLQGA 1072
            MA+ +   N  +++N + IKL + NY LW +   P+L+S  L G VDGT++CP  FL+  
Sbjct: 1    MASSSSTENTPSVSNFLTIKLDRTNYPLWLAQITPILKSRKLWGFVDGTNLCPPCFLKDK 60

Query: 1071 DG-VTTQVDPKYLEWIKKDQNLLIMMNATLSEAVLPYVVGMQTSFSLWNMLSARFSSVSR 895
             G +T QV+P +  WI +DQ +L  +N +L+  VL  V    +  + W  L+ RF+S S+
Sbjct: 61   AGQLTDQVNPDFEPWILQDQMVLSWINGSLTPKVLSTVARSTSLHATWTALATRFASQSQ 120

Query: 894  SHVIQLKSKLHNLKKGSLSLTDYLQQIKEIVDNLAIAGXXXXXXXXXXHILNGLPAEWDS 715
              V+QL++ L    +G++S++DYL ++  I DNLA+AG           ++  +   +++
Sbjct: 121  HRVLQLRADLLRTTRGTMSISDYLDKLNSIADNLALAGSPVPDADLVNIVMTNVGPLYET 180

Query: 714  FATSVRIRNPPVSAXXXXXXXXXXXXXXXXXSQALLPTPTDSMNHAFFTQHSGFKTSSNR 535
              +S + R+ P++                  S+   P   + ++    TQ  G      R
Sbjct: 181  TVSSAQARDSPIT---YEALEVLLLSAERRVSEYAHPAAAEGIHALHATQSRG----RGR 233

Query: 534  GNFSSG-NAPHRDXXXXXXXXXXXXXXXXXXGQYSTAFGGHTSNSGQFNGSSFHQDSQNG 358
             +F SG    +R                   G +S + G   S      G +    + NG
Sbjct: 234  NSFISGRGGSNRGGSYSHGITNSGSAHSRGRGTFSHSRGSSGSRRSSILGPAPGTTTSNG 293

Query: 357  RSRNFSTTNGRPICQICQKVGHLAIDCYDRMNYAYHGKIAPQKLAAMVAASSSNSTTPWF 178
             S  F+T  GR  CQIC + GH AIDC++R+N +Y G++   +L AM A  S +  T W 
Sbjct: 294  NS-FFNT--GRIQCQICSRPGHSAIDCFNRLNLSYEGRVPSSRLNAMTAHHSPSEET-WL 349

Query: 177  VDSGATNHVTSNNANLTNQHEYKGNDKV 94
             D+GA +HVT N  N+ +   YKG D +
Sbjct: 350  TDTGANSHVTPNLGNIDSPKSYKGLDNL 377


>emb|CAN66932.1| hypothetical protein VITISV_030313 [Vitis vinifera]
          Length = 414

 Score =  153 bits (387), Expect = 1e-34
 Identities = 106/405 (26%), Positives = 181/405 (44%), Gaps = 1/405 (0%)
 Frame = -1

Query: 1260 NSIMATQNFNLNIQNITNLIPIKLSKDNYVLWKSLFLPVLRSFDLHGLVDGTDVCPNKFL 1081
            N++++  N  ++I N+   +  KLSK NY  W++ F  +L  +DL G ++GT  CP + +
Sbjct: 19   NTLLSQPNTLISI-NVATQMSFKLSKMNYASWRTQFTNLLFGYDLLGFLNGTTPCPPETI 77

Query: 1080 QGADGVTTQVDPKYLEWIKKDQNLLIMMNATLSEAVLPYVVGMQTSFSLWNMLSARFSSV 901
              +   T   +P+   W ++D+ +L  + A+++  V P +    TS   W  L   F++ 
Sbjct: 78   LQSGFTTPISNPECKLWKRQDRLILHAILASVTWVVSPLISSATTSHEAWQKLEITFANR 137

Query: 900  SRSHVIQLKSKLHNLKKGSLSLTDYLQQIKEIVDNLAIAGXXXXXXXXXXHILNGLPAEW 721
             R+ ++ L++ +    KGS S+ +Y+Q IK I ++LA  G          H+ NGL  ++
Sbjct: 138  LRTRMLSLRNIMMKTTKGSQSIXEYMQTIKIITBDLAFMGYPLSEDEIILHVFNGLDNDF 197

Query: 720  DSFATSVRIRNPPVSAXXXXXXXXXXXXXXXXXSQALLPTPTDSMNHAFFTQHSGFKTSS 541
               + ++R R+ PV+                    +    P  +  H  F+ H G   S 
Sbjct: 198  KEISAAIRARDSPVTFEELHDKLQDQETXLKQDDTSKEAPPIXAQFHHKFSNHKG--NSE 255

Query: 540  NRGNFSSGNAPHRDXXXXXXXXXXXXXXXXXXGQYSTAFGGHTSNSGQFNGSSFHQDSQN 361
              G    GN  ++                    Q +     + SN G  +       SQ 
Sbjct: 256  KSGGHPGGNFNNKGSTNNFGNRNIFDNQGKNIVQGNK----NXSNQGNHHPQQHFNSSQY 311

Query: 360  GRSRNFSTTNGRPICQICQKVGHLAIDCYDRMNYAYHGKIAPQKLAAMVAASSSNSTTPW 181
                N  T   R ICQ+C K GH A  C+ R    +         A  +A   +N +  W
Sbjct: 312  SWCPNNGTNQRRIICQLCDKAGHSAKVCHSRPPSRF------SPXANYIANDQANDSDTW 365

Query: 180  FVDSGATNHVTSNNANLTNQHEYKGNDKVTLGDG-GSPDDYVYDL 49
             ++SGA++H+TS+  NL+ Q  Y GN+ + +GDG G P  + + L
Sbjct: 366  IINSGASHHITSDLQNLSLQSNYGGNEDIMIGDGBGIPITHAFVL 410


>ref|XP_002324404.1| predicted protein [Populus trichocarpa] gi|222865838|gb|EEF02969.1|
            predicted protein [Populus trichocarpa]
          Length = 344

 Score =  145 bits (367), Expect = 2e-32
 Identities = 106/354 (29%), Positives = 164/354 (46%), Gaps = 17/354 (4%)
 Frame = -1

Query: 1212 TNLIPIKLSKDNYVLWKSLFLPVLRSFDLHGLVD-GTDVCPNKFLQGADGVTT-QVDPKY 1039
            TN  P+KL++DNY LW    +P LR  +L G VD  T   P+      DGVTT   +P +
Sbjct: 19   TNFNPVKLTRDNYPLWLPQIVPHLRGRNLFGYVDDSTPPPPSTVSSTIDGVTTTSPNPVF 78

Query: 1038 LEWIKKDQNLLIMMNATLSEAVLPYVVGMQTSFSLWNMLSARFSSVSRSHVIQLKSKLHN 859
            L W K+DQ +L  +N+TL+E +L +V+   TS S W  L   F+S SR+  +Q+  +L  
Sbjct: 79   LHWTKQDQIILGAINSTLTEKMLTHVIRCTTSISAWTTLETLFTSQSRARTMQVHYQLTI 138

Query: 858  LKKGSLSLTDYLQQIKEIVDNLAIAGXXXXXXXXXXHILNGLPAEWDSFATSVRIRNPPV 679
            LKKGS S+ DY Q+ + + D+LA  G           +L GL  ++D F TSV  R  P+
Sbjct: 139  LKKGSSSVADYFQRFQSLTDSLATVGQPLNGFEMVAFLLVGLRPDYDPFVTSVTTRVEPL 198

Query: 678  SAXXXXXXXXXXXXXXXXXSQALLPTPTDSMNHAFFTQ------HSGFKTSSNRGNFSS- 520
            S                           +   H  F +      +S    S    ++++ 
Sbjct: 199  SV-------------------------EEIYGHLLFHELRLEHHYSAIDLSVTGAHYAAC 233

Query: 519  -GNA--PHRDXXXXXXXXXXXXXXXXXXGQYSTAFGGHTSNSGQFNGSSFHQDSQNGRSR 349
             GN+  PHR                     +++  G   +  G      +      GR R
Sbjct: 234  GGNSFRPHRS-------------------SHNSILGAPPTGRGP--SRPYFNRQSRGRGR 272

Query: 348  NFST-----TNGRPICQICQKVGHLAIDCYDRMNYAYHGKIAPQKLAAMVAASS 202
            N  +     ++ RP+CQ+C +VGH+A+DCY+R N ++  + +PQ   A ++A S
Sbjct: 273  NTHSFPGRGSSSRPVCQVCNRVGHIALDCYNRYNESF-SRDSPQLPQAYLSAPS 325


>gb|AAK51235.1|AF287471_1 polyprotein [Arabidopsis thaliana]
          Length = 1453

 Score =  144 bits (363), Expect = 6e-32
 Identities = 110/385 (28%), Positives = 165/385 (42%), Gaps = 5/385 (1%)
 Frame = -1

Query: 1218 NITNLIPIKLSKDNYVLWKSLFLPVLRSFDLHGLVDGTDVCPNKFLQGADGVTTQ--VDP 1045
            ++++ + +KL+  NY+LWK+ F  +L    L G V+G    P + L    G T+    +P
Sbjct: 12   HVSSSVTLKLNDSNYLLWKTQFESLLSCHKLIGFVNGGITPPPRTLNVVTGDTSVDVANP 71

Query: 1044 KYLEWIKKDQNLLIMMNATLSEAVLPYVVGMQTSFSLWNMLSARFSSVSRSHVIQLKSKL 865
            +Y  W   DQ +   +  TLSE VL YV  +QTS  +W  L+  F+  S +    L+  L
Sbjct: 72   QYESWFCTDQLIRSWLFGTLSEEVLGYVHNLQTSRDIWISLAENFNKSSVAREFTLRRTL 131

Query: 864  HNLKKGSLSLTDYLQQIKEIVDNLAIAGXXXXXXXXXXHILNGLPAEWDSFATSVRIRNP 685
              L K   +L+ Y ++   + D L+  G            LNGL  E+D   T ++    
Sbjct: 132  QLLSKKDKTLSAYCREFIAVCDALSSIGKPVDESMKIFGFLNGLGREYDPITTVIQSSLS 191

Query: 684  PVSAXXXXXXXXXXXXXXXXXSQALLPTPTDSMNHAFFTQHSGFK---TSSNRGNFSSGN 514
             +S                   Q+   + T + + AF TQ S +    TS NRG    G 
Sbjct: 192  KIS-PPTFRDVISEVKGFDVKLQSYEESVTANPHMAFNTQRSEYTDNYTSGNRGKGRGGY 250

Query: 513  APHRDXXXXXXXXXXXXXXXXXXGQYSTAFGGHTSNSGQFNGSSFHQDSQNGRSRNFSTT 334
              +R                           G +  S +  G S HQ + N        T
Sbjct: 251  GQNR---------------------------GRSGYSTRGRGFSQHQTNSN-------NT 276

Query: 333  NGRPICQICQKVGHLAIDCYDRMNYAYHGKIAPQKLAAMVAASSSNSTTPWFVDSGATNH 154
              RP+CQIC + GH A+ CY+R ++ Y      Q  +++  + SS     W  DS AT H
Sbjct: 277  GERPVCQICGRTGHTALKCYNRFDHNYQSVDTAQAFSSLRVSDSSGK--EWVPDSAATAH 334

Query: 153  VTSNNANLTNQHEYKGNDKVTLGDG 79
            VTS+  NL     Y G+D V +GDG
Sbjct: 335  VTSSTNNLQAASPYNGSDTVLVGDG 359