BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00009046
         (1343 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAF98300.1| geranyl-diphosphate synthase [Hevea brasiliensis]     217   6e-54
ref|XP_002532570.1| geranyl geranyl pyrophosphate synthase, puta...   209   1e-51
gb|AAS82859.1| geranyl diphosphate synthase small subunit [Antir...   206   8e-51
ref|XP_002322072.1| predicted protein [Populus trichocarpa] gi|2...   205   2e-50
pdb|3QKC|B Chain B, Crystal Structure Of Geranyl Diphosphate Syn...   196   9e-48

>dbj|BAF98300.1| geranyl-diphosphate synthase [Hevea brasiliensis]
          Length = 306

 Score =  217 bits (552), Expect = 6e-54
 Identities = 119/306 (38%), Positives = 187/306 (61%), Gaps = 4/306 (1%)
 Frame = -3

Query: 1314 LASMAASFLHCPTSLTFSSISKTKVNNSSLSCKPIQVTMFQNHSSCATITNEVEAHIEQA 1135
            +A   +S +H   +L   ++S +   +   S +P+ V M  + S  +++  +++ H++QA
Sbjct: 1    MAGALSSTIH--GNLIARAVSSSNPKHPLFSHRPMVVAMSTDQSYWSSVNADLDTHLKQA 58

Query: 1134 LSRGRRQEVFETMQHLIVEAPRSMAPSLCVAACEIVGGNKDQAMSAASALHLMHVAAYTH 955
            +   +   VFE M+HLI+ AP++ AP+LC+AACE+VGG+++QAM+AASAL L+H +A TH
Sbjct: 59   IPIRQPLAVFEPMRHLILSAPQTSAPALCIAACELVGGHRNQAMAAASALRLVHASASTH 118

Query: 954  ENLPFSGTKSMINHA----FKPSIELVTGESIIKFGYEMLARLNDLDNNSSKRMLRAIIE 787
            ENLP +     +       + P+IEL+  + II +G+E+LAR +D   N+S R+LRAIIE
Sbjct: 119  ENLPLTDRPRPMPRTRPTLYGPNIELLIADGIIPYGFELLARDDDAAENNSNRVLRAIIE 178

Query: 786  ISRAMGSKGMVAGQYKELECMGLEGDESCEVGWVHHVLEKKEXXXXXXXXXXXXXXXXAS 607
            ISRAMGS+G++ GQY E +    EG+E   VGW+ +V  KKE                 S
Sbjct: 179  ISRAMGSQGVIEGQYNESQYEESEGEEIFHVGWLQNVCRKKEGTLHACAGACGAILGGGS 238

Query: 606  KEDVETLRRYGLYVGMINGMVVNGIGTEGQEGFEVMERLRDLALKELESLNVGNAENILS 427
            ++++E LRRYGLYVGM+ G +++ +    +   + + +LRDLALKEL+  N    + I  
Sbjct: 239  EDEIEKLRRYGLYVGMVQG-ILSKVDERKEWPVKEVNKLRDLALKELKDFNQAKVKTISI 297

Query: 426  FVNGNF 409
             V   F
Sbjct: 298  LVETRF 303


>ref|XP_002532570.1| geranyl geranyl pyrophosphate synthase, putative [Ricinus communis]
            gi|223527725|gb|EEF29831.1| geranyl geranyl pyrophosphate
            synthase, putative [Ricinus communis]
          Length = 308

 Score =  209 bits (533), Expect = 1e-51
 Identities = 115/246 (46%), Positives = 159/246 (64%), Gaps = 7/246 (2%)
 Frame = -3

Query: 1170 ITNEVEAHIEQALSRGRRQEVFETMQHLIVEAPRSMAPSLCVAACEIVGGNKDQAMSAAS 991
            I  ++E H+++A+       VFE M HL   APRS AP+LC+AACE+VGG++DQA++AAS
Sbjct: 52   INADIETHLKEAIPVRPPVVVFEPMHHLTFAAPRSFAPALCIAACELVGGSRDQALAAAS 111

Query: 990  ALHLMHVAAYTHENLPFS-----GTKSMINHAFKPSIELVTGESIIKFGYEMLARLNDLD 826
            AL LM  AA+THEN+P +       + M +H F P+IEL+TG+ +I F +E+LA+LN+  
Sbjct: 112  ALRLMIAAAFTHENIPLTDRPRPSARPMFHHTFGPNIELLTGDGMIPFAFELLAQLNNPA 171

Query: 825  NNSSKRMLRAIIEISRAMGSKGMVAGQYKELECMGLEGDESCEVGWVHHVLEKKEXXXXX 646
             ++S R+LR +IEISRAMGS+GMV GQY E +     GDE   V W+  V +KKE     
Sbjct: 172  QDNSDRILRVMIEISRAMGSQGMVEGQYNEFQYDQSVGDELFHVAWLRDVCKKKEGASHA 231

Query: 645  XXXXXXXXXXXASKEDVETLRRYGLYVGMINGMVVNGIGTEGQEGFEVME--RLRDLALK 472
                        ++E++E LRRYGLYVG I G + N +  EG E + + E  +LRDLALK
Sbjct: 232  CAGACGAILGGGNEEEIEKLRRYGLYVGTIQG-IYNKV--EGNEEWSLKEVNKLRDLALK 288

Query: 471  ELESLN 454
            EL+  N
Sbjct: 289  ELKDFN 294


>gb|AAS82859.1| geranyl diphosphate synthase small subunit [Antirrhinum majus]
          Length = 297

 Score =  206 bits (525), Expect = 8e-51
 Identities = 124/287 (43%), Positives = 179/287 (62%), Gaps = 5/287 (1%)
 Frame = -3

Query: 1305 MAASFLHCPT-SLTFSSISKTKVNNSSLSCKPIQVTMFQNHSSCATITNEVEAHIEQALS 1129
            MA    H  T S  F SI+K+K    S   +P+ + M +  +  ATI +++E+++++A+ 
Sbjct: 1    MAHGLTHFNTKSGLFPSITKSKTTRPST--RPVILAMTRTQTYRATIESDIESYLKKAIP 58

Query: 1128 RGRRQEVFETMQHLIVEAPRSMAPSLCVAACEIVGGNKDQAMSAASALHLMHVAAYTHEN 949
                + VFE M HL   APR+ A +LCVAACE+VGG++  AM+AA+A+HLMHVAAYTHEN
Sbjct: 59   IRAPESVFEPMHHLTFAAPRTSASALCVAACELVGGDRSDAMAAAAAVHLMHVAAYTHEN 118

Query: 948  LPFSG---TKSMINHAFKPSIELVTGESIIKFGYEMLARLNDLDNNSSKRMLRAIIEISR 778
            LP +    +KS I H F P+IEL+TG+ II FG E++AR  D   N+  R+LRAIIE++R
Sbjct: 119  LPLTDGPMSKSEIQHKFDPNIELLTGDGIIPFGLELMARSMDPTRNNPDRILRAIIELTR 178

Query: 777  AMGSKGMVAGQYKELECMGLEGDESCEVGWVHHVLEKKEXXXXXXXXXXXXXXXXASKED 598
             MGS+G+V GQY EL   GL      E+  + +V +KKE                  ++ 
Sbjct: 179  VMGSEGIVEGQYHEL---GLNQLNDLEL--IEYVCKKKEGTLHACGAACGAILGGCDEDK 233

Query: 597  VETLRRYGLYVGMINGMV-VNGIGTEGQEGFEVMERLRDLALKELES 460
            +E LRR+GLYVG + G++  N  G EG+     ++ L++LA+KELES
Sbjct: 234  IEKLRRFGLYVGTVQGLLGKNRSGFEGR-----IKELKELAVKELES 275


>ref|XP_002322072.1| predicted protein [Populus trichocarpa] gi|222869068|gb|EEF06199.1|
            predicted protein [Populus trichocarpa]
          Length = 236

 Score =  205 bits (521), Expect = 2e-50
 Identities = 105/238 (44%), Positives = 158/238 (66%), Gaps = 1/238 (0%)
 Frame = -3

Query: 1173 TITNEVEAHIEQALSRGRRQEVFETMQHLIVEAPRSMAPSLCVAACEIVGGNKDQAMSAA 994
            ++ +E++AH++QA+       VFE M HL   APR+ AP+LC+AACE+VGGN+DQAM+AA
Sbjct: 5    SVNDEIDAHLKQAIPIRPPLSVFEPMHHLTFAAPRTTAPALCIAACELVGGNRDQAMAAA 64

Query: 993  SALHLMHVAAYTHENLPFSGTKSMINHAFKPSIELVTGESIIKFGYEMLARLNDLDNNSS 814
            SAL LMH AA THE++  +G ++ I H+F  +IEL+TG+ ++ FG E+LA+ +DL  N+S
Sbjct: 65   SALRLMHAAALTHEHILSTGNRARIGHSFGSNIELLTGDGMVPFGLELLAKSDDLTQNNS 124

Query: 813  KRMLRAIIEISRAMGSKGMVAGQYKELECMGLEGDESCEVGWVHHVLEKKEXXXXXXXXX 634
            +R+LR IIEI++AMGS+GM  GQY +         +  +  ++ HV +KKE         
Sbjct: 125  ERILRVIIEITQAMGSQGMALGQYNQF--------QHGQSDYIDHVCKKKEGELHSCAGA 176

Query: 633  XXXXXXXASKEDVETLRRYGLYVGMINGMVVNGIGTEGQEGFE-VMERLRDLALKELE 463
                    ++E++E LRRYGLYVG++ G++ N +  + +   E V+  L +LALKELE
Sbjct: 177  VGAILGGGTEEEIEKLRRYGLYVGLMQGVLSNWVERKEEVSMEKVLNELENLALKELE 234


>pdb|3QKC|B Chain B, Crystal Structure Of Geranyl Diphosphate Synthase Small
            Subunit From Antirrhinum Majus gi|323463188|pdb|3QKC|A
            Chain A, Crystal Structure Of Geranyl Diphosphate
            Synthase Small Subunit From Antirrhinum Majus
          Length = 273

 Score =  196 bits (499), Expect = 9e-48
 Identities = 111/243 (45%), Positives = 159/243 (65%), Gaps = 4/243 (1%)
 Frame = -3

Query: 1176 ATITNEVEAHIEQALSRGRRQEVFETMQHLIVEAPRSMAPSLCVAACEIVGGNKDQAMSA 997
            ATI +++E+++++A+     + VFE M HL   APR+ A +LCVAACE+VGG++  AM+A
Sbjct: 11   ATIESDIESYLKKAIPIRAPESVFEPMHHLTFAAPRTSASALCVAACELVGGDRSDAMAA 70

Query: 996  ASALHLMHVAAYTHENLPFSG---TKSMINHAFKPSIELVTGESIIKFGYEMLARLNDLD 826
            A+A+HLMHVAAYTHENLP +    +KS I H F P+IEL+TG+ II FG E++AR  D  
Sbjct: 71   AAAVHLMHVAAYTHENLPLTDGPMSKSEIQHKFDPNIELLTGDGIIPFGLELMARSMDPT 130

Query: 825  NNSSKRMLRAIIEISRAMGSKGMVAGQYKELECMGLEGDESCEVGWVHHVLEKKEXXXXX 646
             N+  R+LRAIIE++R MGS+G+V GQY EL   GL      E+  + +V +KKE     
Sbjct: 131  RNNPDRILRAIIELTRVMGSEGIVEGQYHEL---GLNQLNDLEL--IEYVCKKKEGTLHA 185

Query: 645  XXXXXXXXXXXASKEDVETLRRYGLYVGMINGMV-VNGIGTEGQEGFEVMERLRDLALKE 469
                         ++ +E LRR+GLYVG + G++  N  G EG+     ++ L++LA+KE
Sbjct: 186  CGAACGAILGGCDEDKIEKLRRFGLYVGTVQGLLGKNRSGFEGR-----IKELKELAVKE 240

Query: 468  LES 460
            LES
Sbjct: 241  LES 243