BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00009040
         (1975 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283378.1| PREDICTED: pentatricopeptide repeat-containi...   525   e-146
ref|XP_002301807.1| predicted protein [Populus trichocarpa] gi|2...   492   e-136
ref|XP_004144398.1| PREDICTED: pentatricopeptide repeat-containi...   489   e-136
ref|XP_003546072.1| PREDICTED: pentatricopeptide repeat-containi...   485   e-134
ref|XP_002534359.1| pentatricopeptide repeat-containing protein,...   478   e-132

>ref|XP_002283378.1| PREDICTED: pentatricopeptide repeat-containing protein At3g25210,
            mitochondrial-like [Vitis vinifera]
          Length = 393

 Score =  525 bits (1352), Expect = e-146
 Identities = 255/340 (75%), Positives = 291/340 (85%)
 Frame = -2

Query: 1692 PSPQNTRFFKPNPRTRTPLEKQFETWIDKLKPGFTPDDVDEALQSQSDPDLAIDIFRWTA 1513
            P PQ+     PNP+T TPL+ QFE+WI  LKPGF+P DVDEAL++QSDPDLA+DIFRWT 
Sbjct: 59   PPPQS-----PNPKTPTPLQMQFESWIHMLKPGFSPSDVDEALRAQSDPDLALDIFRWTG 113

Query: 1512 QQRNYKHNHVTYHTIIRMAIFGKRFGHAETLIEEVVAGACSGSAPLYNSIIRYCCSRKQL 1333
            QQR Y+HNHVTY T+I++A+ GKRF HAETLIEEV+AGACS S PLYNSIIR+CC RK L
Sbjct: 114  QQRGYRHNHVTYLTMIKIAVSGKRFRHAETLIEEVIAGACSVSVPLYNSIIRFCCGRKFL 173

Query: 1332 FNRAFDVYKKMLKSLDCKPSLETYTMLLNAVLRKFNKVNVCYVYLQSVRSLHKQMKASGV 1153
            FNRAFDVYKKML S DCKPSLETYT+LLNA+LRKFNK+ VCYVYL +VRSL KQMK SGV
Sbjct: 174  FNRAFDVYKKMLNSEDCKPSLETYTLLLNALLRKFNKLTVCYVYLHAVRSLTKQMKVSGV 233

Query: 1152 IPDTFALNLIIKAYSKCLDMDGAIRVFREMGLYGCEPNGYSYSYIAKGLCEKGKVSQGLG 973
            IPDTFALN+IIKAYSKCL++D AIRVFREMGLYGCEPN Y+Y YIA GLCEKG+VSQGLG
Sbjct: 234  IPDTFALNMIIKAYSKCLEVDEAIRVFREMGLYGCEPNAYTYGYIANGLCEKGRVSQGLG 293

Query: 972  FYKDMIEKGFVVTSSTYMILICSLSMERRFEDAVKVMFDMLNNSKIPDLLTYKTLLEELC 793
            FY++M  K  V +SSTY+ILICSLSMERRFE+A K++FDML NS  PDLLTYKTLLE L 
Sbjct: 294  FYREMRSKDLVPSSSTYVILICSLSMERRFEEATKILFDMLGNSMAPDLLTYKTLLEGLS 353

Query: 792  REGKGNDAFELLEELRMRRGAMGDKTYNTLLDGLHFLCRE 673
            REGK NDAFELLE+LR +   MG+KTY TL+ GLHFL +E
Sbjct: 354  REGKCNDAFELLEDLRKKDAWMGEKTYKTLVKGLHFLSQE 393


>ref|XP_002301807.1| predicted protein [Populus trichocarpa] gi|222843533|gb|EEE81080.1|
            predicted protein [Populus trichocarpa]
          Length = 325

 Score =  492 bits (1266), Expect = e-136
 Identities = 232/325 (71%), Positives = 276/325 (84%)
 Frame = -2

Query: 1650 TRTPLEKQFETWIDKLKPGFTPDDVDEALQSQSDPDLAIDIFRWTAQQRNYKHNHVTYHT 1471
            TRTPLE QFETW   LKPGFTP DVD A+++QSDPDLA+DIFRWTAQQRNYKHNH+TY T
Sbjct: 1    TRTPLETQFETWTQNLKPGFTPTDVDTAIRAQSDPDLALDIFRWTAQQRNYKHNHITYLT 60

Query: 1470 IIRMAIFGKRFGHAETLIEEVVAGACSGSAPLYNSIIRYCCSRKQLFNRAFDVYKKMLKS 1291
            +I++ I G+R+  AETLIEEV+AGAC  S PLYNS+IR+CC RK LFNRAFD+YKKMLKS
Sbjct: 61   VIKILISGRRYRQAETLIEEVIAGACEISVPLYNSMIRFCCGRKLLFNRAFDIYKKMLKS 120

Query: 1290 LDCKPSLETYTMLLNAVLRKFNKVNVCYVYLQSVRSLHKQMKASGVIPDTFALNLIIKAY 1111
             DCKP+L+TYT+L N++LR+FNK+NVCYVYL +V+SL KQMKASGVIPDTF LN+IIKAY
Sbjct: 121  EDCKPTLDTYTLLFNSLLRRFNKLNVCYVYLHAVKSLTKQMKASGVIPDTFVLNMIIKAY 180

Query: 1110 SKCLDMDGAIRVFREMGLYGCEPNGYSYSYIAKGLCEKGKVSQGLGFYKDMIEKGFVVTS 931
            +KCL++D A+RVFREMGLYGCE N YSYSY+ KGLC KG+  QGLGFYK+M  KG V + 
Sbjct: 181  AKCLEVDEAVRVFREMGLYGCEANAYSYSYLVKGLCGKGRSGQGLGFYKEMKGKGLVPSG 240

Query: 930  STYMILICSLSMERRFEDAVKVMFDMLNNSKIPDLLTYKTLLEELCREGKGNDAFELLEE 751
            STYMILICSL MERRFE+A+ V+FDML +S  PDLLTY+T+LE LCREG  + AFELLEE
Sbjct: 241  STYMILICSLGMERRFEEAIGVVFDMLGDSMSPDLLTYRTVLEGLCREGMVDKAFELLEE 300

Query: 750  LRMRRGAMGDKTYNTLLDGLHFLCR 676
             R + G MG+K Y +LL+GLHF+ R
Sbjct: 301  WRKKDGFMGEKNYKSLLNGLHFVSR 325


>ref|XP_004144398.1| PREDICTED: pentatricopeptide repeat-containing protein At3g25210,
            mitochondrial-like [Cucumis sativus]
            gi|449516331|ref|XP_004165200.1| PREDICTED:
            pentatricopeptide repeat-containing protein At3g25210,
            mitochondrial-like [Cucumis sativus]
          Length = 393

 Score =  489 bits (1260), Expect = e-136
 Identities = 240/378 (63%), Positives = 295/378 (78%), Gaps = 9/378 (2%)
 Frame = -2

Query: 1779 PILSNSPF---------SYLSHHSIXXXXXXXXXXXXNPSPQNTRFFKPNPRTRTPLEKQ 1627
            P L +SPF         S+L H  +              +  N     P  RT+TPLEKQ
Sbjct: 16   PHLFSSPFQSLLNPILPSHLHHRFLCSLSPPSSALLPPQNSDNLNLPIPKVRTQTPLEKQ 75

Query: 1626 FETWIDKLKPGFTPDDVDEALQSQSDPDLAIDIFRWTAQQRNYKHNHVTYHTIIRMAIFG 1447
            FE+W+ KLKPGF+P DV+EALQ+QSDPDLA+D+FRWTAQQR YKHNH+TY TII++ I+ 
Sbjct: 76   FESWVQKLKPGFSPSDVNEALQAQSDPDLALDLFRWTAQQRGYKHNHLTYLTIIKILIYR 135

Query: 1446 KRFGHAETLIEEVVAGACSGSAPLYNSIIRYCCSRKQLFNRAFDVYKKMLKSLDCKPSLE 1267
            +R   AETL+EEV+AGAC  S PLYNS+IR+CC+RK  FNRAFDVYKKM KS DCKP+LE
Sbjct: 136  RRCHLAETLVEEVIAGACEMSVPLYNSVIRFCCARKCRFNRAFDVYKKMWKSDDCKPTLE 195

Query: 1266 TYTMLLNAVLRKFNKVNVCYVYLQSVRSLHKQMKASGVIPDTFALNLIIKAYSKCLDMDG 1087
            TY ML N++LR+FNK++V YVYL SVRSL KQMK+SGVIPDTF LN+IIKAYSKCL++D 
Sbjct: 196  TYAMLFNSLLRRFNKLSVSYVYLHSVRSLTKQMKSSGVIPDTFVLNMIIKAYSKCLEVDE 255

Query: 1086 AIRVFREMGLYGCEPNGYSYSYIAKGLCEKGKVSQGLGFYKDMIEKGFVVTSSTYMILIC 907
            AIRVFREMGLY C+PN Y+Y YIAKGLCEKG+V QGL FYK+M  +G + +SSTYMILIC
Sbjct: 256  AIRVFREMGLYACQPNSYTYGYIAKGLCEKGRVEQGLEFYKEMRVRGLIPSSSTYMILIC 315

Query: 906  SLSMERRFEDAVKVMFDMLNNSKIPDLLTYKTLLEELCREGKGNDAFELLEELRMRRGAM 727
            SL+MERRFE+A+++ FDML NS  PDLLTY+TLLE LCREG+ ++AF+LL+ELR R   M
Sbjct: 316  SLAMERRFEEAIEICFDMLCNSMAPDLLTYRTLLEGLCREGRDSEAFDLLDELRKRDKLM 375

Query: 726  GDKTYNTLLDGLHFLCRE 673
             +KT+ TLL+GLH + R+
Sbjct: 376  NEKTFKTLLNGLHTVGRD 393


>ref|XP_003546072.1| PREDICTED: pentatricopeptide repeat-containing protein At3g25210,
            mitochondrial-like [Glycine max]
          Length = 372

 Score =  485 bits (1248), Expect = e-134
 Identities = 230/327 (70%), Positives = 280/327 (85%), Gaps = 1/327 (0%)
 Frame = -2

Query: 1650 TRTPLEKQFETWIDKLKPGFTPDDVDEALQSQSDPDLAIDIFRWTAQQRNYKHNHVTYHT 1471
            +RTP EKQFETW+  LKPGFTP DV +ALQ+QSDPDLA+DIFRWTAQQRNYKH H TY  
Sbjct: 46   SRTPSEKQFETWVQALKPGFTPSDVAQALQAQSDPDLALDIFRWTAQQRNYKHTHHTYLI 105

Query: 1470 IIRMAIFGKRFGHAETLIEEVVAGACS-GSAPLYNSIIRYCCSRKQLFNRAFDVYKKMLK 1294
            II+  I G+R+ HAETLIEEV+AGAC   S PLYNSIIR+CC RK LFNRAFDVYKKML 
Sbjct: 106  IIKHLIAGRRYHHAETLIEEVIAGACDDASIPLYNSIIRFCCGRKFLFNRAFDVYKKMLN 165

Query: 1293 SLDCKPSLETYTMLLNAVLRKFNKVNVCYVYLQSVRSLHKQMKASGVIPDTFALNLIIKA 1114
            S DCKP+LETY++L N++LR+FNK+NVCYVYL +VRSL KQMKASGVIPD+F LN+IIKA
Sbjct: 166  SRDCKPNLETYSLLFNSLLRRFNKLNVCYVYLHAVRSLTKQMKASGVIPDSFVLNMIIKA 225

Query: 1113 YSKCLDMDGAIRVFREMGLYGCEPNGYSYSYIAKGLCEKGKVSQGLGFYKDMIEKGFVVT 934
            Y+KCL++D AIRVFREMGLYGCEPN YSY YIAKGLCEKG+V QGL FY++M  KG V +
Sbjct: 226  YAKCLEVDEAIRVFREMGLYGCEPNAYSYGYIAKGLCEKGRVDQGLRFYREMRGKGLVPS 285

Query: 933  SSTYMILICSLSMERRFEDAVKVMFDMLNNSKIPDLLTYKTLLEELCREGKGNDAFELLE 754
            +ST++I++CSL+MERRFEDA++V+FDML  S+ PD LTYKT+LE LCREG+ ++AFELL+
Sbjct: 286  TSTFVIIVCSLAMERRFEDAIEVLFDMLGQSRSPDHLTYKTVLEGLCREGRVDEAFELLD 345

Query: 753  ELRMRRGAMGDKTYNTLLDGLHFLCRE 673
            E + R  +MG+KTY +LL+ L+ +CR+
Sbjct: 346  ECKKRDVSMGEKTYKSLLNDLYVVCRD 372


>ref|XP_002534359.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223525434|gb|EEF28024.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 382

 Score =  478 bits (1229), Expect = e-132
 Identities = 228/327 (69%), Positives = 272/327 (83%)
 Frame = -2

Query: 1653 RTRTPLEKQFETWIDKLKPGFTPDDVDEALQSQSDPDLAIDIFRWTAQQRNYKHNHVTYH 1474
            RTRTPLE QFETW   LKPGFTP DV  AL+SQSDPDLA DIFRWTAQQRNYKH+H+TY 
Sbjct: 56   RTRTPLETQFETWTQTLKPGFTPTDVQTALRSQSDPDLAYDIFRWTAQQRNYKHSHLTYF 115

Query: 1473 TIIRMAIFGKRFGHAETLIEEVVAGACSGSAPLYNSIIRYCCSRKQLFNRAFDVYKKMLK 1294
             +I++ I GKR+ HAETL+EEV+AGAC  +  LYNS+IR+CC RK LFNRAFDVYKKML+
Sbjct: 116  AMIKILIDGKRYRHAETLVEEVIAGACEMNVQLYNSMIRFCCGRKLLFNRAFDVYKKMLQ 175

Query: 1293 SLDCKPSLETYTMLLNAVLRKFNKVNVCYVYLQSVRSLHKQMKASGVIPDTFALNLIIKA 1114
            S DCKP+LETYT+LLN++LR+FNK+NVCYVYL +V+SL KQMKASGVIPDTFALN+IIKA
Sbjct: 176  SDDCKPTLETYTLLLNSLLRRFNKLNVCYVYLHAVKSLTKQMKASGVIPDTFALNMIIKA 235

Query: 1113 YSKCLDMDGAIRVFREMGLYGCEPNGYSYSYIAKGLCEKGKVSQGLGFYKDMIEKGFVVT 934
            ++KC ++D AIRVFREMGLYGCEPNGYSY YI KGLCEKG+V QGLGFYK+M  K  + +
Sbjct: 236  FAKCREVDEAIRVFREMGLYGCEPNGYSYGYIVKGLCEKGRVGQGLGFYKEMKRKELIPS 295

Query: 933  SSTYMILICSLSMERRFEDAVKVMFDMLNNSKIPDLLTYKTLLEELCREGKGNDAFELLE 754
              TYMILICSL+++ R  +A+ V+FDML NS  PD LTY+T+LE LCREGK ++AFELLE
Sbjct: 296  GGTYMILICSLAVDLRLGEAIDVVFDMLANSMSPDFLTYRTVLEGLCREGKTDEAFELLE 355

Query: 753  ELRMRRGAMGDKTYNTLLDGLHFLCRE 673
            E R R  +M  KTY  LL+ L F+ R+
Sbjct: 356  EFRKRDMSMSQKTYKILLNALQFVNRD 382