BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00006973
         (838 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI16226.3| unnamed protein product [Vitis vinifera]              300   3e-79
ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III s...   300   3e-79
ref|XP_002300065.1| predicted protein [Populus trichocarpa] gi|2...   283   4e-74
ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III s...   267   2e-69
dbj|BAA96933.1| DNA-directed RNA polymerase II largest chain [Ar...   263   5e-68

>emb|CBI16226.3| unnamed protein product [Vitis vinifera]
          Length = 1819

 Score =  300 bits (768), Expect = 3e-79
 Identities = 144/237 (60%), Positives = 187/237 (78%), Gaps = 8/237 (3%)
 Frame = +3

Query: 141 VQDQLQFTKLPYIEDVGPRRIKSVNFSMFSGAEISKASECQVWSTSLYNQAKKPIPHGLL 320
           ++D +QFTK PYIEDVGPR+I+S+ F++FS +EISKA+E QVW    Y+  +KPI +GLL
Sbjct: 1   MKDGIQFTKEPYIEDVGPRKIESIRFALFSESEISKAAEVQVWRGVYYDANRKPIENGLL 60

Query: 321 DSRMGPANKSGTCATCHGSFTSCPGHFGYLNLVLPVYNVGYFSSIINILKSICKSCARIL 500
           D RMGPANK+GTCATC G+F  CPGH GYL L LPVYNVGY S+I++ILK ICKSC+R+L
Sbjct: 61  DPRMGPANKNGTCATCLGNFRDCPGHCGYLTLALPVYNVGYLSTIVDILKCICKSCSRVL 120

Query: 501 LPEKECRDYLRKMRNSRKEALEKNALAKQVVKKC--------KTTCYRCGYVNGMVKKAG 656
           L EK  +DYL+KMR+ + EAL+K  L K++V+KC           C RCGY+NG+VKKA 
Sbjct: 121 LDEKASKDYLKKMRSQKMEALKKAELMKKIVQKCTAMASSKKAVKCSRCGYMNGIVKKAV 180

Query: 657 SMLSIVHDRSKVVDGDLTWKECSTALSHIKESTASFNLVHVLNPVRVLALFKKMLDE 827
           S+L I+HDRSK+ DG L  +ECS+A+SH KES ASF++V +LNPV+VL+LFK+M+DE
Sbjct: 181 SVLGIIHDRSKIADGSL--EECSSAISHTKESKASFSVVDILNPVKVLSLFKRMMDE 235


>ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis
           vinifera]
          Length = 1383

 Score =  300 bits (768), Expect = 3e-79
 Identities = 144/237 (60%), Positives = 187/237 (78%), Gaps = 8/237 (3%)
 Frame = +3

Query: 141 VQDQLQFTKLPYIEDVGPRRIKSVNFSMFSGAEISKASECQVWSTSLYNQAKKPIPHGLL 320
           ++D +QFTK PYIEDVGPR+I+S+ F++FS +EISKA+E QVW    Y+  +KPI +GLL
Sbjct: 1   MKDGIQFTKEPYIEDVGPRKIESIRFALFSESEISKAAEVQVWRGVYYDANRKPIENGLL 60

Query: 321 DSRMGPANKSGTCATCHGSFTSCPGHFGYLNLVLPVYNVGYFSSIINILKSICKSCARIL 500
           D RMGPANK+GTCATC G+F  CPGH GYL L LPVYNVGY S+I++ILK ICKSC+R+L
Sbjct: 61  DPRMGPANKNGTCATCLGNFRDCPGHCGYLTLALPVYNVGYLSTIVDILKCICKSCSRVL 120

Query: 501 LPEKECRDYLRKMRNSRKEALEKNALAKQVVKKC--------KTTCYRCGYVNGMVKKAG 656
           L EK  +DYL+KMR+ + EAL+K  L K++V+KC           C RCGY+NG+VKKA 
Sbjct: 121 LDEKASKDYLKKMRSQKMEALKKAELMKKIVQKCTAMASSKKAVKCSRCGYMNGIVKKAV 180

Query: 657 SMLSIVHDRSKVVDGDLTWKECSTALSHIKESTASFNLVHVLNPVRVLALFKKMLDE 827
           S+L I+HDRSK+ DG L  +ECS+A+SH KES ASF++V +LNPV+VL+LFK+M+DE
Sbjct: 181 SVLGIIHDRSKIADGSL--EECSSAISHTKESKASFSVVDILNPVKVLSLFKRMMDE 235


>ref|XP_002300065.1| predicted protein [Populus trichocarpa] gi|222847323|gb|EEE84870.1|
           predicted protein [Populus trichocarpa]
          Length = 1394

 Score =  283 bits (723), Expect = 4e-74
 Identities = 139/231 (60%), Positives = 176/231 (76%), Gaps = 8/231 (3%)
 Frame = +3

Query: 159 FTKLPYIEDVGPRRIKSVNFSMFSGAEISKASECQVWSTSLYNQAKKPIPHGLLDSRMGP 338
           +TK PYIEDVGPRRIKS+ FS  SG++I KASECQV     Y+  KK I  GLLD+RMG 
Sbjct: 10  YTKQPYIEDVGPRRIKSIQFSTMSGSDILKASECQVHLGQYYDANKKAIVGGLLDTRMGA 69

Query: 339 ANKSGTCATCHGSFTSCPGHFGYLNLVLPVYNVGYFSSIINILKSICKSCARILLPEKEC 518
            NK GTC TC GSFT CPGHFGYLNLVLPVYNVGY S+I++ILK ICKSC+R+L+ EK  
Sbjct: 70  PNKHGTCQTCGGSFTDCPGHFGYLNLVLPVYNVGYLSTILDILKCICKSCSRVLVDEKLR 129

Query: 519 RDYLRKMRNSRKEALEKNALAKQVVKKCKT-------TCYRCGYVNGMVKKAGSMLSIVH 677
           + YL++MRN R E L+KN L K++VKKC +        C RCGY+NGMVKKAGS++ I+H
Sbjct: 130 KSYLKRMRNPRTEPLKKNELMKEIVKKCSSMASSKAVKCLRCGYMNGMVKKAGSVVGIIH 189

Query: 678 DRSKVVDGDLTWKECSTALSHIKESTASFNL-VHVLNPVRVLALFKKMLDE 827
           DRSK++DG L  +EC +A+ H +E+ A   L  ++LNPVRVL+LF++M++E
Sbjct: 190 DRSKLIDGYL--EECKSAIGHTREARAPIGLATYILNPVRVLSLFQRMVEE 238


>ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
           [Brachypodium distachyon]
          Length = 1392

 Score =  267 bits (683), Expect = 2e-69
 Identities = 134/233 (57%), Positives = 173/233 (74%), Gaps = 1/233 (0%)
 Frame = +3

Query: 132 MATVQDQLQFTKLPYIEDVGPRRIKSVNFSMFSGAEISKASECQVWSTSLYNQAKKPIPH 311
           MA  +++L+ TK P++EDVG RRIKS+ FSMFSG EI +++E QVW+  +Y    KP+P+
Sbjct: 1   MARPEEKLRCTKEPFVEDVGTRRIKSMRFSMFSGKEIRQSAETQVWNNRIYGNDMKPVPN 60

Query: 312 GLLDSRMGPANKSGTCATCHGSFTSCPGHFGYLNLVLPVYNVGYFSSIINILKSICKSCA 491
           GLLD RMG ANK G CATCHGS+  CPGHFGYL LVLPV+NVG+F++I+++LKSICK C+
Sbjct: 61  GLLDPRMGAANKFGECATCHGSYHECPGHFGYLKLVLPVFNVGFFNNILDVLKSICKGCS 120

Query: 492 RILLPEKECRDYLRKMRNSRKEALEKNALAKQVVKKCK-TTCYRCGYVNGMVKKAGSMLS 668
           RILL EK+ R++L+KMRN R E L K AL K+V  KCK + C  CGY+NG+ KK    L 
Sbjct: 121 RILLHEKDQREFLKKMRNPRLEPLHKAALMKKVRDKCKLSRCPSCGYINGVAKKGRPGLL 180

Query: 669 IVHDRSKVVDGDLTWKECSTALSHIKESTASFNLVHVLNPVRVLALFKKMLDE 827
           IVHD SK +DG  + +E  +ALSH KE   S + VH L+P  VL+LFK+M DE
Sbjct: 181 IVHDCSKTLDG--STEELRSALSHKKEK-LSISSVHTLDPATVLSLFKRMTDE 230


>dbj|BAA96933.1| DNA-directed RNA polymerase II largest chain [Arabidopsis thaliana]
          Length = 1383

 Score =  263 bits (671), Expect = 5e-68
 Identities = 132/236 (55%), Positives = 169/236 (71%), Gaps = 10/236 (4%)
 Frame = +3

Query: 150 QLQFTKLPYIEDVGPRRIKSVNFSMFSGAEISKASECQVWSTSLYNQAKKPIPHGLLDSR 329
           +++FTK PYIEDVGP +IKS+NFS+ S  E+ KA+E QVW+  LY+ + KP  +GLLD R
Sbjct: 6   EIEFTKKPYIEDVGPLKIKSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENGLLDPR 65

Query: 330 MGPANKSGTCATCHGSFTSCPGHFGYLNLVLPVYNVGYFSSIINILKSICKSCARILLPE 509
           MGP NK   C TC G+F +CPGH+GYL L LPVYNVGYF+ I++ILK ICK C+ +LL E
Sbjct: 66  MGPPNKKSICTTCEGNFQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKRCSNMLLDE 125

Query: 510 KECRDYLRKMRNSRKEALEKNALAKQVVKKCKT-------TCYRCGYVNGMVKKAGSM-- 662
           K   D+LRKMRN R E L+K  LAK VVKKC T       TC +CGY+NGMVKK  +   
Sbjct: 126 KLYEDHLRKMRNPRMEPLKKTELAKAVVKKCSTMASQRIITCKKCGYLNGMVKKIAAQFG 185

Query: 663 LSIVHDRSKVVDGDLTWKECSTALSHIKESTASFN-LVHVLNPVRVLALFKKMLDE 827
           + I HDRSK+  G++   EC +A+SH K+STA+ N L +VL+P  VL LFK+M D+
Sbjct: 186 IGISHDRSKIHGGEI--DECKSAISHTKQSTAAINPLTYVLDPNLVLGLFKRMSDK 239