BLASTX nr result
ID: Cimicifuga21_contig00006881
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00006881
(512 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI18915.3| unnamed protein product [Vitis vinifera] 112 4e-23
ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su... 112 4e-23
ref|XP_003537656.1| PREDICTED: DNA-directed RNA polymerase II su... 110 1e-22
emb|CAA36734.1| DNA-directed RNA polymerase [Glycine max] 110 1e-22
ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II su... 108 6e-22
>emb|CBI18915.3| unnamed protein product [Vitis vinifera]
Length = 1565
Score = 112 bits (279), Expect = 4e-23
Identities = 50/56 (89%), Positives = 54/56 (96%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDYSPSSPQFSPSAGYSPTAPGYSPSSTSQYTPQLSTKDEGS 343
PTYSP+SPYNSGVSPDYSPSSPQ+SPSAGYSP+APGYSPSSTSQYTPQ+S KD GS
Sbjct: 1508 PTYSPTSPYNSGVSPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQMSNKDNGS 1563
Score = 61.2 bits (147), Expect = 8e-08
Identities = 33/56 (58%), Positives = 37/56 (66%), Gaps = 7/56 (12%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDYSPSSPQFSP-SAGYSPTAPGYSPSSTS------QYTPQL 364
PTYSPSSP S SP YSP+SP +SP S YSPT+P YSP+S S YTP L
Sbjct: 1343 PTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYTPLL 1398
Score = 60.1 bits (144), Expect = 2e-07
Identities = 30/48 (62%), Positives = 37/48 (77%), Gaps = 1/48 (2%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDYSPSSPQFSPSA-GYSPTAPGYSPSSTSQYTP 370
P YSP+SP S SP YSP+SP +SPS+ GYSPT+P YSP+S S Y+P
Sbjct: 1322 PGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPS-YSP 1368
Score = 57.0 bits (136), Expect = 2e-06
Identities = 30/46 (65%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
Frame = -3
Query: 504 YSPSSPYNSGVSPDYSPSSPQFSP-SAGYSPTAPGYSPSSTSQYTP 370
YSPSSP S SP YSP+SP +SP S GYSPT+P YSPSS Y+P
Sbjct: 1310 YSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPG-YSP 1354
>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
vinifera]
Length = 1848
Score = 112 bits (279), Expect = 4e-23
Identities = 50/56 (89%), Positives = 54/56 (96%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDYSPSSPQFSPSAGYSPTAPGYSPSSTSQYTPQLSTKDEGS 343
PTYSP+SPYNSGVSPDYSPSSPQ+SPSAGYSP+APGYSPSSTSQYTPQ+S KD GS
Sbjct: 1791 PTYSPTSPYNSGVSPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQMSNKDNGS 1846
Score = 60.8 bits (146), Expect = 1e-07
Identities = 31/48 (64%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDYSPSSPQFSP-SAGYSPTAPGYSPSSTSQYTP 370
PTYSPSSP S SP YSP+SP +SP S YSPT+P YSP+S S Y+P
Sbjct: 1583 PTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSP 1629
Score = 60.5 bits (145), Expect = 1e-07
Identities = 31/48 (64%), Positives = 37/48 (77%), Gaps = 1/48 (2%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDYSPSSPQFSP-SAGYSPTAPGYSPSSTSQYTP 370
P YSPSSP S SP YSP+SP +SP S GYSPT+PGYSP+S + Y+P
Sbjct: 1541 PGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPT-YSP 1587
Score = 60.5 bits (145), Expect = 1e-07
Identities = 29/51 (56%), Positives = 39/51 (76%), Gaps = 1/51 (1%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDYSPSSPQFSP-SAGYSPTAPGYSPSSTSQYTPQLS 361
P+YSP+SP S SP YSP+SP +SP S YSPT+P Y+PSS ++Y+P L+
Sbjct: 1702 PSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPSS-AKYSPSLA 1751
Score = 60.1 bits (144), Expect = 2e-07
Identities = 30/48 (62%), Positives = 37/48 (77%), Gaps = 1/48 (2%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDYSPSSPQFSPSA-GYSPTAPGYSPSSTSQYTP 370
P YSP+SP S SP YSP+SP +SPS+ GYSPT+P YSP+S S Y+P
Sbjct: 1562 PGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPS-YSP 1608
Score = 59.3 bits (142), Expect = 3e-07
Identities = 29/48 (60%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDYSPSSPQFSP-SAGYSPTAPGYSPSSTSQYTP 370
P+YSP+SP S SP YSP+SP +SP S YSPT+P YSP+S S Y+P
Sbjct: 1639 PSYSPTSPVYSPTSPSYSPTSPAYSPTSPAYSPTSPSYSPTSPS-YSP 1685
Score = 58.9 bits (141), Expect = 4e-07
Identities = 31/48 (64%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDYSPSSPQFSP-SAGYSPTAPGYSPSSTSQYTP 370
P YSPSSP S SP YSP+SP +SP S GYSPT+P YSPSS Y+P
Sbjct: 1548 PGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPG-YSP 1594
Score = 58.9 bits (141), Expect = 4e-07
Identities = 29/48 (60%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDYSPSSPQFSP-SAGYSPTAPGYSPSSTSQYTP 370
P YSP+SP S SP YSP+SP +SP S YSPT+P YSP+S S Y+P
Sbjct: 1597 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSP 1643
Score = 58.9 bits (141), Expect = 4e-07
Identities = 29/48 (60%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDYSPSSPQFSP-SAGYSPTAPGYSPSSTSQYTP 370
P YSP+SP S SP YSP+SP +SP S YSPT+P YSP+S S Y+P
Sbjct: 1660 PAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSP 1706
Score = 58.9 bits (141), Expect = 4e-07
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDYSPSSPQFSP--------SAGYSPTAPGYSPSSTSQYTP 370
P+YSP+SP S SP YSP+SP +SP S YSPT+PGYSP+S S Y+P
Sbjct: 1674 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPS-YSP 1727
Score = 58.2 bits (139), Expect = 7e-07
Identities = 29/48 (60%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDYSPSSPQFSP-SAGYSPTAPGYSPSSTSQYTP 370
P YSP+SP S SP YSP+SP +SP S YSPT+P YSP+S S Y+P
Sbjct: 1590 PGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSP 1636
Score = 57.4 bits (137), Expect = 1e-06
Identities = 28/48 (58%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDYSPSSPQFSP-SAGYSPTAPGYSPSSTSQYTP 370
P+YSP+SP S SP YSP+SP +SP S YSPT+P YSP+S + Y+P
Sbjct: 1625 PSYSPTSPSYSPTSPSYSPTSPVYSPTSPSYSPTSPAYSPTSPA-YSP 1671
Score = 57.0 bits (136), Expect = 2e-06
Identities = 26/42 (61%), Positives = 32/42 (76%), Gaps = 1/42 (2%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDYSPSSPQFSP-SAGYSPTAPGYSPSS 388
P+YSP+SP S SP YSP+SP +SP S YSPT+P YSP+S
Sbjct: 1604 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1645
Score = 55.1 bits (131), Expect = 6e-06
Identities = 26/47 (55%), Positives = 34/47 (72%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDYSPSSPQFSPSAGYSPTAPGYSPSSTSQYTP 370
P+YSP+SP S SP Y+PSS ++SPS YSP++P SPS S Y+P
Sbjct: 1723 PSYSPTSPSYSPTSPSYNPSSAKYSPSLAYSPSSPRLSPS--SPYSP 1767
>ref|XP_003537656.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Glycine
max]
Length = 1827
Score = 110 bits (275), Expect = 1e-22
Identities = 50/58 (86%), Positives = 52/58 (89%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDYSPSSPQFSPSAGYSPTAPGYSPSSTSQYTPQLSTKDEGSNR 337
PTYSPSSPYNSGVSPDYSPSSPQFSPS GYSP+ PGYSPSSTSQYTPQ S KD+G R
Sbjct: 1770 PTYSPSSPYNSGVSPDYSPSSPQFSPSTGYSPSQPGYSPSSTSQYTPQTSDKDDGGTR 1827
Score = 60.8 bits (146), Expect = 1e-07
Identities = 31/48 (64%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDYSPSSPQFSP-SAGYSPTAPGYSPSSTSQYTP 370
PTYSPSSP S SP YSP+SP +SP S YSPT+P YSP+S S Y+P
Sbjct: 1583 PTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSP 1629
Score = 60.5 bits (145), Expect = 1e-07
Identities = 31/48 (64%), Positives = 37/48 (77%), Gaps = 1/48 (2%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDYSPSSPQFSP-SAGYSPTAPGYSPSSTSQYTP 370
P YSPSSP S SP YSP+SP +SP S GYSPT+PGYSP+S + Y+P
Sbjct: 1541 PGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPT-YSP 1587
Score = 60.1 bits (144), Expect = 2e-07
Identities = 30/48 (62%), Positives = 37/48 (77%), Gaps = 1/48 (2%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDYSPSSPQFSPSA-GYSPTAPGYSPSSTSQYTP 370
P YSP+SP S SP YSP+SP +SPS+ GYSPT+P YSP+S S Y+P
Sbjct: 1562 PGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPS-YSP 1608
Score = 58.9 bits (141), Expect = 4e-07
Identities = 31/48 (64%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDYSPSSPQFSP-SAGYSPTAPGYSPSSTSQYTP 370
P YSPSSP S SP YSP+SP +SP S GYSPT+P YSPSS Y+P
Sbjct: 1548 PGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPG-YSP 1594
Score = 58.9 bits (141), Expect = 4e-07
Identities = 29/48 (60%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDYSPSSPQFSP-SAGYSPTAPGYSPSSTSQYTP 370
P YSP+SP S SP YSP+SP +SP S YSPT+P YSP+S S Y+P
Sbjct: 1639 PAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSP 1685
Score = 58.9 bits (141), Expect = 4e-07
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDYSPSSPQFSP--------SAGYSPTAPGYSPSSTSQYTP 370
P+YSP+SP S SP YSP+SP +SP S YSPT+PGYSP+S S Y+P
Sbjct: 1653 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPS-YSP 1706
Score = 58.9 bits (141), Expect = 4e-07
Identities = 28/51 (54%), Positives = 38/51 (74%), Gaps = 1/51 (1%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDYSPSSPQFSP-SAGYSPTAPGYSPSSTSQYTPQLS 361
P+YSP+SP S SP YSP+SP +SP S YSPT+P Y+P S ++Y+P L+
Sbjct: 1681 PSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQS-AKYSPSLA 1730
Score = 58.5 bits (140), Expect = 5e-07
Identities = 29/48 (60%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDYSPSSPQFSP-SAGYSPTAPGYSPSSTSQYTP 370
P+YSP+SP S SP YSP+SP +SP S YSPT+P YSP+S S Y+P
Sbjct: 1632 PSYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSP 1678
Score = 58.2 bits (139), Expect = 7e-07
Identities = 28/48 (58%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDYSPSSPQFSP-SAGYSPTAPGYSPSSTSQYTP 370
P+YSP+SP S SP YSP+SP +SP S YSPT+P YSP+S + Y+P
Sbjct: 1604 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPA-YSP 1650
Score = 58.2 bits (139), Expect = 7e-07
Identities = 29/48 (60%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDYSPSSPQFSP-SAGYSPTAPGYSPSSTSQYTP 370
P+YSP+SP S SP YSP+SP +SP S YSPT+P YSP+S S Y+P
Sbjct: 1625 PSYSPTSPSYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPS-YSP 1671
Score = 55.1 bits (131), Expect = 6e-06
Identities = 30/60 (50%), Positives = 37/60 (61%), Gaps = 13/60 (21%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDY-------------SPSSPQFSPSAGYSPTAPGYSPSSTSQYTP 370
P+YSP+SP S SP Y SPSSP+ SPS+ YSPT+P YSP+S S Y+P
Sbjct: 1702 PSYSPTSPSYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPSSPYSPTSPNYSPTSPS-YSP 1760
>emb|CAA36734.1| DNA-directed RNA polymerase [Glycine max]
Length = 494
Score = 110 bits (275), Expect = 1e-22
Identities = 50/58 (86%), Positives = 52/58 (89%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDYSPSSPQFSPSAGYSPTAPGYSPSSTSQYTPQLSTKDEGSNR 337
PTYSPSSPYNSGVSPDYSPSSPQFSPS GYSP+ PGYSPSSTSQYTPQ S KD+G R
Sbjct: 437 PTYSPSSPYNSGVSPDYSPSSPQFSPSTGYSPSQPGYSPSSTSQYTPQTSDKDDGGTR 494
Score = 60.8 bits (146), Expect = 1e-07
Identities = 31/48 (64%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDYSPSSPQFSP-SAGYSPTAPGYSPSSTSQYTP 370
PTYSPSSP S SP YSP+SP +SP S YSPT+P YSP+S S Y+P
Sbjct: 250 PTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSP 296
Score = 60.5 bits (145), Expect = 1e-07
Identities = 31/48 (64%), Positives = 37/48 (77%), Gaps = 1/48 (2%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDYSPSSPQFSP-SAGYSPTAPGYSPSSTSQYTP 370
P YSPSSP S SP YSP+SP +SP S GYSPT+PGYSP+S + Y+P
Sbjct: 208 PGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPT-YSP 254
Score = 60.1 bits (144), Expect = 2e-07
Identities = 30/48 (62%), Positives = 37/48 (77%), Gaps = 1/48 (2%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDYSPSSPQFSPSA-GYSPTAPGYSPSSTSQYTP 370
P YSP+SP S SP YSP+SP +SPS+ GYSPT+P YSP+S S Y+P
Sbjct: 229 PGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPS-YSP 275
Score = 58.9 bits (141), Expect = 4e-07
Identities = 31/48 (64%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDYSPSSPQFSP-SAGYSPTAPGYSPSSTSQYTP 370
P YSPSSP S SP YSP+SP +SP S GYSPT+P YSPSS Y+P
Sbjct: 215 PGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPG-YSP 261
Score = 58.9 bits (141), Expect = 4e-07
Identities = 29/48 (60%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDYSPSSPQFSP-SAGYSPTAPGYSPSSTSQYTP 370
P YSP+SP S SP YSP+SP +SP S YSPT+P YSP+S S Y+P
Sbjct: 306 PAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSP 352
Score = 58.9 bits (141), Expect = 4e-07
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDYSPSSPQFSP--------SAGYSPTAPGYSPSSTSQYTP 370
P+YSP+SP S SP YSP+SP +SP S YSPT+PGYSP+S S Y+P
Sbjct: 320 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPS-YSP 373
Score = 58.9 bits (141), Expect = 4e-07
Identities = 28/51 (54%), Positives = 38/51 (74%), Gaps = 1/51 (1%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDYSPSSPQFSP-SAGYSPTAPGYSPSSTSQYTPQLS 361
P+YSP+SP S SP YSP+SP +SP S YSPT+P Y+P S ++Y+P L+
Sbjct: 348 PSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQS-AKYSPSLA 397
Score = 58.5 bits (140), Expect = 5e-07
Identities = 29/48 (60%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDYSPSSPQFSP-SAGYSPTAPGYSPSSTSQYTP 370
P+YSP+SP S SP YSP+SP +SP S YSPT+P YSP+S S Y+P
Sbjct: 299 PSYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSP 345
Score = 58.2 bits (139), Expect = 7e-07
Identities = 28/48 (58%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDYSPSSPQFSP-SAGYSPTAPGYSPSSTSQYTP 370
P+YSP+SP S SP YSP+SP +SP S YSPT+P YSP+S + Y+P
Sbjct: 271 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPA-YSP 317
Score = 58.2 bits (139), Expect = 7e-07
Identities = 29/48 (60%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDYSPSSPQFSP-SAGYSPTAPGYSPSSTSQYTP 370
P+YSP+SP S SP YSP+SP +SP S YSPT+P YSP+S S Y+P
Sbjct: 292 PSYSPTSPSYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPS-YSP 338
Score = 55.1 bits (131), Expect = 6e-06
Identities = 30/60 (50%), Positives = 37/60 (61%), Gaps = 13/60 (21%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDY-------------SPSSPQFSPSAGYSPTAPGYSPSSTSQYTP 370
P+YSP+SP S SP Y SPSSP+ SPS+ YSPT+P YSP+S S Y+P
Sbjct: 369 PSYSPTSPSYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPSSPYSPTSPNYSPTSPS-YSP 427
>ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis
sativus]
Length = 1853
Score = 108 bits (269), Expect = 6e-22
Identities = 49/58 (84%), Positives = 53/58 (91%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDYSPSSPQFSPSAGYSPTAPGYSPSSTSQYTPQLSTKDEGSNR 337
PTYSPSSPYN+G SPDYSPSSPQ+SPSAGYSPTAPGYSPSSTSQYTPQ S KD+ S +
Sbjct: 1791 PTYSPSSPYNTGPSPDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQTSDKDDRSRK 1848
Score = 61.2 bits (147), Expect = 8e-08
Identities = 30/48 (62%), Positives = 37/48 (77%), Gaps = 1/48 (2%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDYSPSSPQFSP-SAGYSPTAPGYSPSSTSQYTP 370
P+YSP+SP S SP YSP+SP +SP S GYSPT+P YSP+S S Y+P
Sbjct: 1688 PSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPS-YSP 1734
Score = 60.8 bits (146), Expect = 1e-07
Identities = 31/48 (64%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDYSPSSPQFSP-SAGYSPTAPGYSPSSTSQYTP 370
PTYSPSSP S SP YSP+SP +SP S YSPT+P YSP+S S Y+P
Sbjct: 1583 PTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSP 1629
Score = 60.5 bits (145), Expect = 1e-07
Identities = 31/48 (64%), Positives = 37/48 (77%), Gaps = 1/48 (2%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDYSPSSPQFSP-SAGYSPTAPGYSPSSTSQYTP 370
P YSPSSP S SP YSP+SP +SP S GYSPT+PGYSP+S + Y+P
Sbjct: 1541 PGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPT-YSP 1587
Score = 60.1 bits (144), Expect = 2e-07
Identities = 30/48 (62%), Positives = 37/48 (77%), Gaps = 1/48 (2%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDYSPSSPQFSPSA-GYSPTAPGYSPSSTSQYTP 370
P YSP+SP S SP YSP+SP +SPS+ GYSPT+P YSP+S S Y+P
Sbjct: 1562 PGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPS-YSP 1608
Score = 59.3 bits (142), Expect = 3e-07
Identities = 30/49 (61%), Positives = 36/49 (73%), Gaps = 1/49 (2%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDYSPSSPQFSP-SAGYSPTAPGYSPSSTSQYTPQ 367
P+YSP+SP S SP YSP+SP +SP S YSPT+P YSP+S S Y PQ
Sbjct: 1695 PSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPS-YNPQ 1742
Score = 58.9 bits (141), Expect = 4e-07
Identities = 31/48 (64%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDYSPSSPQFSP-SAGYSPTAPGYSPSSTSQYTP 370
P YSPSSP S SP YSP+SP +SP S GYSPT+P YSPSS Y+P
Sbjct: 1548 PGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPG-YSP 1594
Score = 58.9 bits (141), Expect = 4e-07
Identities = 29/48 (60%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDYSPSSPQFSP-SAGYSPTAPGYSPSSTSQYTP 370
P+YSP+SP S SP YSP+SP +SP S YSPT+P YSP+S S Y+P
Sbjct: 1625 PSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPS-YSP 1671
Score = 58.9 bits (141), Expect = 4e-07
Identities = 29/48 (60%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDYSPSSPQFSP-SAGYSPTAPGYSPSSTSQYTP 370
P YSP+SP S SP YSP+SP +SP S YSPT+P YSP+S S Y+P
Sbjct: 1653 PAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSP 1699
Score = 58.2 bits (139), Expect = 7e-07
Identities = 28/48 (58%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDYSPSSPQFSP-SAGYSPTAPGYSPSSTSQYTP 370
P+YSP+SP S SP YSP+SP +SP S YSPT+P YSP+S + Y+P
Sbjct: 1604 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA-YSP 1650
Score = 58.2 bits (139), Expect = 7e-07
Identities = 29/48 (60%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDYSPSSPQFSP-SAGYSPTAPGYSPSSTSQYTP 370
P YSP+SP S SP YSP+SP +SP S YSPT+P YSP+S S Y+P
Sbjct: 1646 PAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSP 1692
Score = 58.2 bits (139), Expect = 7e-07
Identities = 28/48 (58%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Frame = -3
Query: 510 PTYSPSSPYNSGVSPDYSPSSPQFSP-SAGYSPTAPGYSPSSTSQYTP 370
P+YSP+SP S SP YSP+SP +SP S YSPT+P YSP+S + Y+P
Sbjct: 1667 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA-YSP 1713