BLASTX nr result
ID: Cimicifuga21_contig00006647
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00006647
(1005 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japo... 75 1e-19
gb|EEE54600.1| hypothetical protein OsJ_01823 [Oryza sativa Japo... 75 1e-19
ref|XP_002446679.1| hypothetical protein SORBIDRAFT_06g020406 [S... 69 1e-19
ref|XP_002462720.1| hypothetical protein SORBIDRAFT_02g030860 [S... 67 2e-19
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 70 5e-19
>gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japonica Group]
Length = 1594
Score = 74.7 bits (182), Expect(2) = 1e-19
Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 11/121 (9%)
Frame = +2
Query: 68 QDEIIWHPSKYGEFTVKSCYKLLCQYSYPSRQTKIPWI-----------KHLWRLKVLQK 214
+D + WH G FTVKS YK+ + + + P + K LW+L V K
Sbjct: 1227 EDVLAWHFDARGCFTVKSAYKVQREMERRASRNGCPGVSNWESGDDDFWKKLWKLGVPGK 1286
Query: 215 VRFFLWQLATDALPSVALLRTRGLPIESSCSLCGFELEDCEHLFIKCAFARAVWTFFSLH 394
++ FLW++ + L A L+ RG+ +++ C +CG ED HLF KC + VW +L
Sbjct: 1287 IKHFLWRMCHNTLALRANLQHRGMDVDTRCVMCGRYNEDAGHLFFKCKPVKKVWQALNLE 1346
Query: 395 E 397
E
Sbjct: 1347 E 1347
Score = 48.9 bits (115), Expect(2) = 1e-19
Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 3/110 (2%)
Frame = +1
Query: 400 PDFYSTTVACALWTIWLARNESKFKGVRSSPMRKVLQAKAMVQDMISVNNMIGISARSPH 579
P+ T+ LW W RNE + G+ SP + + + +N + +SP
Sbjct: 1369 PEIERTSAIVCLWQWWKERNEVREGGIPRSPAELSHLIMSQAGEFVRMN----VKEKSPR 1424
Query: 580 LG--VTWKPPPRGKLKFNVDGSVLRSGASGA-GFLLRDYNGAFQLGFAQP 720
G W+ PP +K N DG+ + G GF++RD GA A P
Sbjct: 1425 TGECAVWRRPPLNFVKINTDGAYSSNMKQGGWGFVIRDQTGAVLQAGAGP 1474
>gb|EEE54600.1| hypothetical protein OsJ_01823 [Oryza sativa Japonica Group]
Length = 639
Score = 74.7 bits (182), Expect(2) = 1e-19
Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 11/121 (9%)
Frame = +2
Query: 68 QDEIIWHPSKYGEFTVKSCYKLLCQYSYPSRQTKIPWI-----------KHLWRLKVLQK 214
+D + WH G FTVKS YK+ + + + P + K LW+L V K
Sbjct: 194 EDVLAWHFDARGCFTVKSAYKVQREMERRASRNGCPGVSNWESGDDDFWKKLWKLGVPGK 253
Query: 215 VRFFLWQLATDALPSVALLRTRGLPIESSCSLCGFELEDCEHLFIKCAFARAVWTFFSLH 394
++ FLW++ + L A L+ RG+ +++ C +CG ED HLF KC + VW +L
Sbjct: 254 IKHFLWRMCHNTLALRANLQHRGMDVDTRCVMCGRYNEDAGHLFFKCKPVKKVWQALNLE 313
Query: 395 E 397
E
Sbjct: 314 E 314
Score = 48.9 bits (115), Expect(2) = 1e-19
Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 3/110 (2%)
Frame = +1
Query: 400 PDFYSTTVACALWTIWLARNESKFKGVRSSPMRKVLQAKAMVQDMISVNNMIGISARSPH 579
P+ T+ LW W RNE + G+ SP + + + +N + +SP
Sbjct: 336 PEIERTSAIVCLWQWWKERNEVREGGIPRSPAELSHLIMSQAGEFVRMN----VKEKSPR 391
Query: 580 LG--VTWKPPPRGKLKFNVDGSVLRSGASGA-GFLLRDYNGAFQLGFAQP 720
G W+ PP +K N DG+ + G GF++RD GA A P
Sbjct: 392 TGECAVWRRPPLNFVKINTDGAYSSNMKQGGWGFVIRDQTGAVLQAGAGP 441
>ref|XP_002446679.1| hypothetical protein SORBIDRAFT_06g020406 [Sorghum bicolor]
gi|241937862|gb|EES11007.1| hypothetical protein
SORBIDRAFT_06g020406 [Sorghum bicolor]
Length = 395
Score = 69.3 bits (168), Expect(2) = 1e-19
Identities = 35/112 (31%), Positives = 60/112 (53%), Gaps = 14/112 (12%)
Frame = +2
Query: 83 WHPSKYGEFTVKSCYKLLCQYSYPSRQ--------------TKIPWIKHLWRLKVLQKVR 220
WH K G FTV+S Y++L + SR+ ++ W K LW +K+ K++
Sbjct: 32 WHHEKNGLFTVRSAYRMLIELK-KSREDYFEGRANCSDFATSQKEW-KKLWSMKLPSKIK 89
Query: 221 FFLWQLATDALPSVALLRTRGLPIESSCSLCGFELEDCEHLFIKCAFARAVW 376
F W+LA +++P+ ++L++R L S C +CG + EH + C ++ VW
Sbjct: 90 VFCWRLALNSIPTASVLKSRNLASTSHCKICGAVDDTWEHSLLFCTMSKCVW 141
Score = 53.9 bits (128), Expect(2) = 1e-19
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
Frame = +1
Query: 382 FLAA*VPDFYSTTVACALWTIWLARNESKFKGVRSSPMRKVLQAKAMVQDMISVNNMI-- 555
F+ +P V W IW AR ++ +GV SP ++ ++++ + M
Sbjct: 166 FMCCNIPQADGIRVLVTCWAIWQARRKAIHEGVFQSPFSIMVTINRQIEELQMIRGMELK 225
Query: 556 -GISARSPHLGVTWKPPPRGKLKFNVDGSVLRSGASGA-GFLLRDYNGAF 699
G +S WK P +GK K NVD +V R G+ GA G + R+ G F
Sbjct: 226 GGNQNQSKQKTRLWKAPDQGKCKINVDAAVNRVGSKGAVGVVCRNDRGEF 275
>ref|XP_002462720.1| hypothetical protein SORBIDRAFT_02g030860 [Sorghum bicolor]
gi|241926097|gb|EER99241.1| hypothetical protein
SORBIDRAFT_02g030860 [Sorghum bicolor]
Length = 438
Score = 66.6 bits (161), Expect(2) = 2e-19
Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 7/130 (5%)
Frame = +2
Query: 65 NQDEIIWHPSKYGEFTVKSCYKLLCQYSYPSRQTKIP-------WIKHLWRLKVLQKVRF 223
+QD W+ K G ++V+S YKLL + Q P W K LW+L+V KVR
Sbjct: 144 SQDFWAWNSEKTGVYSVRSAYKLLYNKKFGWNQNLAPGSSSVGLW-KMLWKLQVPPKVRV 202
Query: 224 FLWQLATDALPSVALLRTRGLPIESSCSLCGFELEDCEHLFIKCAFARAVWTFFSLHECL 403
F W++A D LP+ +L + + + C CG E H+ + + AR W H+
Sbjct: 203 FWWRVANDFLPARQVLFKKHIEPVAFCEDCGDPEESIRHVLVDGSIARIFW-----HQVR 257
Query: 404 ISTPPRLPVL 433
+ T ++P L
Sbjct: 258 LGTGVKIPTL 267
Score = 56.2 bits (134), Expect(2) = 2e-19
Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Frame = +1
Query: 421 VACALWTIWLARNESKFKGVRSSPMRKVLQAKAMVQDMISVNNMIGISARSPHLGVTWKP 600
+ C +W +W+ RN+ + S + V+ A+ D+ ++ P + + W+P
Sbjct: 289 ILCGMWALWMMRNKRRHGEKSMSVHQAVVWARDTALDLWQISQ--ATRREKPQIELKWRP 346
Query: 601 PPRGKLKFNVDGSVLRSGASGA-GFLLRDYNGAFQLGFAQPLWHVSALLAET 753
P G +K N D S G GA ++RD+ GAF++ AQ W+V L A T
Sbjct: 347 PEPGWVKVNADASFQSDGKVGATACVVRDHRGAFRV--AQARWYVWGLDACT 396
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1750
Score = 69.7 bits (169), Expect(2) = 5e-19
Identities = 42/130 (32%), Positives = 60/130 (46%), Gaps = 10/130 (7%)
Frame = +2
Query: 17 GVAYRVLLPTERLAGVNQDEIIWHPSKYGEFTVKSCYKLLCQYSYPSRQTKIPWIK---- 184
G +R+ L + D+IIW+ + GE+TV+S Y LL T IP I
Sbjct: 1369 GFIHRIYLAKSK----KPDKIIWNYNTTGEYTVRSGYWLLTH----DPSTNIPAINPPHG 1420
Query: 185 ------HLWRLKVLQKVRFFLWQLATDALPSVALLRTRGLPIESSCSLCGFELEDCEHLF 346
+W L ++ K++ FLW+ + AL + L TRG+ I+ SC C E E H
Sbjct: 1421 SIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHAL 1480
Query: 347 IKCAFARAVW 376
C FA W
Sbjct: 1481 FTCPFATMAW 1490
Score = 51.6 bits (122), Expect(2) = 5e-19
Identities = 47/169 (27%), Positives = 69/169 (40%), Gaps = 7/169 (4%)
Frame = +1
Query: 373 LDFFLAA*VPDFYSTTVACALWTIWLARNESKFKGVRSSPMRKVLQAKAMVQDMI----S 540
L+F + DF+ +W IW ARN F R SP + VL AKA D + S
Sbjct: 1515 LNFVQDTTMSDFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQS 1574
Query: 541 VNNMIGISARSPHLGVTWKPPPRGKLKFNVDG--SVLRSGASGAGFLLRDYNGAFQLGFA 714
+ + + W+ PP +K N D V + A+G G+++R++ G +
Sbjct: 1575 HKKTPSPTRQIAENKIEWRNPPATYVKCNFDAGFDVQKLEATG-GWIIRNHYGTPISWGS 1633
Query: 715 QPLWHVS-ALLAETXXXXXXXXXXXXXXXKDFTIEMDCQALCLILLGSS 858
L H S L AET +E DCQ L ++ G S
Sbjct: 1634 MKLAHTSNPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLINLINGIS 1682