BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00005798
         (1616 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   127   6e-27
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]              111   5e-22
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]              111   5e-22
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]              111   5e-22
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]              111   5e-22

>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  127 bits (320), Expect = 6e-27
 Identities = 62/99 (62%), Positives = 76/99 (76%), Gaps = 1/99 (1%)
 Frame = +3

Query: 594  ERWSLYIATKGKGAIGYKWVYKKDASLEPG-GTRYKAKLVAKGFAQKEGVDYNEIFSPVV 770
            + W L I   G+  I  KWV+KK   + P  G +YKA++VA+GF Q+EGVDYNEIFSPVV
Sbjct: 821  QTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVV 880

Query: 771  KHTSIHVLLGLVAHQDLELQQLDVKTTFLQEDLEEEIYM 887
            +HTSI VLL +VAHQ+LEL+QLDVKT FL  +LEEEIYM
Sbjct: 881  RHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYM 919



 Score = 85.1 bits (209), Expect = 5e-14
 Identities = 59/203 (29%), Positives = 89/203 (43%), Gaps = 17/203 (8%)
 Frame = +2

Query: 467  PVKNYGQTNLVEYILSIKDD----EPLSYRQAMRDPNNQSWLLVMRGEMESLHRY*GQGS 634
            P   YG  ++V Y L + ++    EP +Y++A+   +++ W   M  EMESLH+     +
Sbjct: 766  PPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHK---NQT 822

Query: 635  YWLQMGVQERCFSRARWY-------------KVQGKISGKGVRTERGSGLQ*DFLTSCEA 775
            + L +    R     +W              K + ++  +G     G      F      
Sbjct: 823  WDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRH 882

Query: 776  YIYPRVVGFGGSPRS*VATTRCKNNVLAGGLRGGNLYDQPKSYKVVDKEGHVCRLKKSLY 955
                 ++         +     K   L G L       QP  ++V  KE HVC+LKKSLY
Sbjct: 883  TSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMTQPDGFQVPGKENHVCKLKKSLY 942

Query: 956  VLKQSPLQWYKRFDTFMVEHDYT 1024
             LKQSP QWYKRFD++MV+  YT
Sbjct: 943  GLKQSPRQWYKRFDSYMVKLGYT 965


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  111 bits (278), Expect = 5e-22
 Identities = 56/97 (57%), Positives = 69/97 (71%)
 Frame = +3

Query: 600  WSLYIATKGKGAIGYKWVYKKDASLEPGGTRYKAKLVAKGFAQKEGVDYNEIFSPVVKHT 779
            W L    KG+ AIG KWVYK          RY+A+LV KG+AQKEG+D+NEIFSPVV+ T
Sbjct: 820  WELVELPKGRKAIGNKWVYKIKRDGNDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLT 879

Query: 780  SIHVLLGLVAHQDLELQQLDVKTTFLQEDLEEEIYMI 890
            +I V+L + A  DL L+QLDVKT FL  +LEEEIYM+
Sbjct: 880  TIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYML 916



 Score = 69.3 bits (168), Expect = 3e-09
 Identities = 53/195 (27%), Positives = 82/195 (42%), Gaps = 13/195 (6%)
 Frame = +2

Query: 476  NYGQTNLVEYILSIKDDEPLSYRQAMRDPNNQSWLLVMRGEMESLHRY*GQGSYW--LQM 649
            +Y  T+   Y L  ++ EP ++ +A+   +   W+  M  EME+LHR       W  +++
Sbjct: 770  DYVMTSHDAYCLITEEGEPSTFHEALNGSDASQWMTAMHEEMEALHR----NKTWELVEL 825

Query: 650  GVQERCFSRARWYKVQ-----------GKISGKGVRTERGSGLQ*DFLTSCEAYIYPRVV 796
                +       YK++            ++  KG   + G      F           V+
Sbjct: 826  PKGRKAIGNKWVYKIKRDGNDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVVL 885

Query: 797  GFGGSPRS*VATTRCKNNVLAGGLRGGNLYDQPKSYKVVDKEGHVCRLKKSLYVLKQSPL 976
                +    +     K   L G L       QP+ +K   KE  VCRL KSLY LKQ+P 
Sbjct: 886  AMCAALDLHLEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLTKSLYGLKQAPR 945

Query: 977  QWYKRFDTFMVEHDY 1021
             WYKRFD+F++  DY
Sbjct: 946  CWYKRFDSFIISLDY 960


>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  111 bits (278), Expect = 5e-22
 Identities = 56/97 (57%), Positives = 69/97 (71%)
 Frame = +3

Query: 600  WSLYIATKGKGAIGYKWVYKKDASLEPGGTRYKAKLVAKGFAQKEGVDYNEIFSPVVKHT 779
            W L    KG+ AIG KWVYK          RY+A+LV KG+AQKEG+D+NEIFSPVV+ T
Sbjct: 820  WELVELPKGRKAIGNKWVYKIKRDGNDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLT 879

Query: 780  SIHVLLGLVAHQDLELQQLDVKTTFLQEDLEEEIYMI 890
            +I V+L + A  DL L+QLDVKT FL  +LEEEIYM+
Sbjct: 880  TIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYML 916



 Score = 63.2 bits (152), Expect = 2e-07
 Identities = 50/195 (25%), Positives = 80/195 (41%), Gaps = 13/195 (6%)
 Frame = +2

Query: 476  NYGQTNLVEYILSIKDDEPLSYRQAMRDPNNQSWLLVMRGEMESLHRY*GQGSYW--LQM 649
            +Y  T    Y L  ++ EP ++ +A+   +   W+  +  EME+L +       W  +++
Sbjct: 770  DYVMTGHDAYCLIAEEGEPSTFHEALNGSDASQWMTAIHEEMEALRK----NKTWELVEL 825

Query: 650  GVQERCFSRARWYKVQ-----------GKISGKGVRTERGSGLQ*DFLTSCEAYIYPRVV 796
                +       YK++            ++  KG   + G      F           V+
Sbjct: 826  PKGRKAIGNKWVYKIKRDGNDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVVL 885

Query: 797  GFGGSPRS*VATTRCKNNVLAGGLRGGNLYDQPKSYKVVDKEGHVCRLKKSLYVLKQSPL 976
                +    +     K   L G L       QP+ +K   KE  VCRL KSLY LKQ+P 
Sbjct: 886  AMCAALDLHLEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLTKSLYGLKQAPR 945

Query: 977  QWYKRFDTFMVEHDY 1021
             WYKRFD+F++  DY
Sbjct: 946  CWYKRFDSFIISLDY 960


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  111 bits (278), Expect = 5e-22
 Identities = 56/97 (57%), Positives = 69/97 (71%)
 Frame = +3

Query: 600  WSLYIATKGKGAIGYKWVYKKDASLEPGGTRYKAKLVAKGFAQKEGVDYNEIFSPVVKHT 779
            W L    KG+ AIG KWVYK          RY+A+LV KG+AQKEG+D+NEIFSPVV+ T
Sbjct: 820  WELVELPKGRKAIGNKWVYKIKRDGNDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLT 879

Query: 780  SIHVLLGLVAHQDLELQQLDVKTTFLQEDLEEEIYMI 890
            +I V+L + A  DL L+QLDVKT FL  +LEEEIYM+
Sbjct: 880  TIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYML 916



 Score = 69.7 bits (169), Expect = 2e-09
 Identities = 53/196 (27%), Positives = 83/196 (42%), Gaps = 13/196 (6%)
 Frame = +2

Query: 476  NYGQTNLVEYILSIKDDEPLSYRQAMRDPNNQSWLLVMRGEMESLHRY*GQGSYW--LQM 649
            +Y  T+   Y L  ++ EP ++ +A+   +   W+  M  EME+LHR       W  +++
Sbjct: 770  DYVMTSHDAYCLITEEGEPSTFHEALNGSDASQWMTAMHEEMEALHR----NKTWELVEL 825

Query: 650  GVQERCFSRARWYKVQ-----------GKISGKGVRTERGSGLQ*DFLTSCEAYIYPRVV 796
                +       YK++            ++  KG   + G      F           V+
Sbjct: 826  PKGRKAIGNKWVYKIKRDGNDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVVL 885

Query: 797  GFGGSPRS*VATTRCKNNVLAGGLRGGNLYDQPKSYKVVDKEGHVCRLKKSLYVLKQSPL 976
                +    +     K   L G L       QP+ +K   KE  VCRL KSLY LKQ+P 
Sbjct: 886  AMCAALDLHLEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLTKSLYGLKQAPR 945

Query: 977  QWYKRFDTFMVEHDYT 1024
             WYKRFD+F++  DY+
Sbjct: 946  CWYKRFDSFIISLDYS 961


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  111 bits (278), Expect = 5e-22
 Identities = 56/97 (57%), Positives = 69/97 (71%)
 Frame = +3

Query: 600  WSLYIATKGKGAIGYKWVYKKDASLEPGGTRYKAKLVAKGFAQKEGVDYNEIFSPVVKHT 779
            W L    KG+ AIG KWVYK          RY+A+LV KG+AQKEG+D+NEIFSPVV+ T
Sbjct: 820  WELVELPKGRKAIGNKWVYKIKRDGNDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLT 879

Query: 780  SIHVLLGLVAHQDLELQQLDVKTTFLQEDLEEEIYMI 890
            +I V+L + A  DL L+QLDVKT FL  +LEEEIYM+
Sbjct: 880  TIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYML 916



 Score = 69.7 bits (169), Expect = 2e-09
 Identities = 53/196 (27%), Positives = 83/196 (42%), Gaps = 13/196 (6%)
 Frame = +2

Query: 476  NYGQTNLVEYILSIKDDEPLSYRQAMRDPNNQSWLLVMRGEMESLHRY*GQGSYW--LQM 649
            +Y  T+   Y L  ++ EP ++ +A+   +   W+  M  EME+LHR       W  +++
Sbjct: 770  DYVMTSHDAYCLITEEGEPSTFHEALNGSDASQWMTAMHEEMEALHR----NKTWELVEL 825

Query: 650  GVQERCFSRARWYKVQ-----------GKISGKGVRTERGSGLQ*DFLTSCEAYIYPRVV 796
                +       YK++            ++  KG   + G      F           V+
Sbjct: 826  PKGRKAIGNKWVYKIKRDGNDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVVL 885

Query: 797  GFGGSPRS*VATTRCKNNVLAGGLRGGNLYDQPKSYKVVDKEGHVCRLKKSLYVLKQSPL 976
                +    +     K   L G L       QP+ +K   KE  VCRL KSLY LKQ+P 
Sbjct: 886  AMCAALDLHLEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLTKSLYGLKQAPR 945

Query: 977  QWYKRFDTFMVEHDYT 1024
             WYKRFD+F++  DY+
Sbjct: 946  CWYKRFDSFIISLDYS 961