BLASTX nr result
ID: Cimicifuga21_contig00005690
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00005690
(819 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002514265.1| DNA-directed RNA polymerase II, putative [Ri... 172 8e-41
emb|CBI28035.3| unnamed protein product [Vitis vinifera] 170 3e-40
ref|XP_002331171.1| predicted protein [Populus trichocarpa] gi|2... 170 3e-40
ref|XP_002284107.1| PREDICTED: DNA-directed RNA polymerases I, I... 170 3e-40
ref|NP_188871.1| DNA-directed RNA polymerase II subunit E [Arabi... 169 5e-40
>ref|XP_002514265.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
gi|223546721|gb|EEF48219.1| DNA-directed RNA polymerase
II, putative [Ricinus communis]
Length = 225
Score = 172 bits (436), Expect = 8e-41
Identities = 95/167 (56%), Positives = 114/167 (68%)
Frame = -2
Query: 818 IYVFFPEELKVGVKTIRNCVDRMKAGNVFRAILVAQKPLTPSAKHGIKEVSSRFRVEDFQ 639
IYVFFPEE KVGVKT++ +RMK+ NVFRAILV Q+ LTP A+ I E++S+F +E FQ
Sbjct: 87 IYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQSLTPFARTCIAEIASKFHLEVFQ 146
Query: 638 EEELVVNIKEHVLVPKHEVLTTEKKKDLLERYNLKDAQLPRMKIYDPIARYYGXXXXXXX 459
E EL+VNIKEHVLVP+H+VLT E+KK LLERY +K+ QLPR++I DPIA
Sbjct: 147 ESELLVNIKEHVLVPEHQVLTNEEKKTLLERYTVKETQLPRIQISDPIA----------- 195
Query: 458 XXXXXXXXXXXXXXXIARYYGLKCGQVVKITRKSDTAGTYDTYRCVV 318
RYYGLK GQVVKI R S+TAG Y TYR VV
Sbjct: 196 -----------------RYYGLKRGQVVKIIRPSETAGRYVTYRYVV 225
>emb|CBI28035.3| unnamed protein product [Vitis vinifera]
Length = 186
Score = 170 bits (431), Expect = 3e-40
Identities = 93/167 (55%), Positives = 115/167 (68%)
Frame = -2
Query: 818 IYVFFPEELKVGVKTIRNCVDRMKAGNVFRAILVAQKPLTPSAKHGIKEVSSRFRVEDFQ 639
IYVFFPEE KVGVKT++ +RMK+ NVFRAILV Q+ LTP A+ I E+S++F +E FQ
Sbjct: 48 IYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISTKFHLEVFQ 107
Query: 638 EEELVVNIKEHVLVPKHEVLTTEKKKDLLERYNLKDAQLPRMKIYDPIARYYGXXXXXXX 459
E EL+VNIKEHVLVP+H+VLT+E+KK LLERY +K+ QLPR+++ DPI
Sbjct: 108 EAELLVNIKEHVLVPEHQVLTSEEKKTLLERYTVKETQLPRIQVSDPI------------ 155
Query: 458 XXXXXXXXXXXXXXXIARYYGLKCGQVVKITRKSDTAGTYDTYRCVV 318
ARY+GLK GQVVKI R S+TAG Y TYR VV
Sbjct: 156 ----------------ARYFGLKRGQVVKIIRPSETAGRYITYRYVV 186
>ref|XP_002331171.1| predicted protein [Populus trichocarpa] gi|222873254|gb|EEF10385.1|
predicted protein [Populus trichocarpa]
Length = 206
Score = 170 bits (431), Expect = 3e-40
Identities = 93/167 (55%), Positives = 114/167 (68%)
Frame = -2
Query: 818 IYVFFPEELKVGVKTIRNCVDRMKAGNVFRAILVAQKPLTPSAKHGIKEVSSRFRVEDFQ 639
IYVFFPEE KVGVKT++ +RMK+ NVFRAILV Q+ LTP A+ I E+S++F +E FQ
Sbjct: 68 IYVFFPEEAKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISTKFHLEVFQ 127
Query: 638 EEELVVNIKEHVLVPKHEVLTTEKKKDLLERYNLKDAQLPRMKIYDPIARYYGXXXXXXX 459
E EL+VNIKEHVLVP+H+VL+ E+KK LLERY +K+ QLPR++I DPIA
Sbjct: 128 EAELLVNIKEHVLVPEHQVLSNEEKKTLLERYTVKETQLPRIQITDPIA----------- 176
Query: 458 XXXXXXXXXXXXXXXIARYYGLKCGQVVKITRKSDTAGTYDTYRCVV 318
RYYGLK GQVVKI R S+TAG Y TYR V+
Sbjct: 177 -----------------RYYGLKRGQVVKIIRPSETAGRYVTYRYVI 206
>ref|XP_002284107.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 1 [Vitis vinifera]
gi|225445172|ref|XP_002284110.1| PREDICTED: DNA-directed
RNA polymerases I, II, and III subunit RPABC1 isoform 2
[Vitis vinifera]
Length = 206
Score = 170 bits (431), Expect = 3e-40
Identities = 93/167 (55%), Positives = 115/167 (68%)
Frame = -2
Query: 818 IYVFFPEELKVGVKTIRNCVDRMKAGNVFRAILVAQKPLTPSAKHGIKEVSSRFRVEDFQ 639
IYVFFPEE KVGVKT++ +RMK+ NVFRAILV Q+ LTP A+ I E+S++F +E FQ
Sbjct: 68 IYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISTKFHLEVFQ 127
Query: 638 EEELVVNIKEHVLVPKHEVLTTEKKKDLLERYNLKDAQLPRMKIYDPIARYYGXXXXXXX 459
E EL+VNIKEHVLVP+H+VLT+E+KK LLERY +K+ QLPR+++ DPI
Sbjct: 128 EAELLVNIKEHVLVPEHQVLTSEEKKTLLERYTVKETQLPRIQVSDPI------------ 175
Query: 458 XXXXXXXXXXXXXXXIARYYGLKCGQVVKITRKSDTAGTYDTYRCVV 318
ARY+GLK GQVVKI R S+TAG Y TYR VV
Sbjct: 176 ----------------ARYFGLKRGQVVKIIRPSETAGRYITYRYVV 206
>ref|NP_188871.1| DNA-directed RNA polymerase II subunit E [Arabidopsis thaliana]
gi|13899113|gb|AAK48978.1|AF370551_1 RNA polymerase I,
II and III 24.3 kDa subunit [Arabidopsis thaliana]
gi|15724322|gb|AAL06554.1|AF412101_1 AT3g22320/MCB17_5
[Arabidopsis thaliana] gi|3372233|gb|AAC28253.1| RNA
polymerase I, II and III 24.3 kDa subunit [Arabidopsis
thaliana] gi|9293866|dbj|BAB01769.1| RNA polymerase I,
II and III 24.3 kDa subunit [Arabidopsis thaliana]
gi|21554280|gb|AAM63355.1| RNA polymerase I, II and III
24.3 kDa subunit [Arabidopsis thaliana]
gi|25083949|gb|AAN72141.1| RNA polymerase I, II and III
24.3 kDa subunit [Arabidopsis thaliana]
gi|332643100|gb|AEE76621.1| DNA-directed RNA polymerase
II subunit E [Arabidopsis thaliana]
Length = 205
Score = 169 bits (429), Expect = 5e-40
Identities = 91/167 (54%), Positives = 115/167 (68%)
Frame = -2
Query: 818 IYVFFPEELKVGVKTIRNCVDRMKAGNVFRAILVAQKPLTPSAKHGIKEVSSRFRVEDFQ 639
+Y+FFP+E KVGVKT++ +RMK+ NVFRAILV Q+ LTP A+ I E+SS+F +E FQ
Sbjct: 67 LYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISSKFHLEVFQ 126
Query: 638 EEELVVNIKEHVLVPKHEVLTTEKKKDLLERYNLKDAQLPRMKIYDPIARYYGXXXXXXX 459
E E++VNIKEHVLVP+H+VLTTE+KK LLERY +K+ QLPR+++ DPI
Sbjct: 127 EAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPI------------ 174
Query: 458 XXXXXXXXXXXXXXXIARYYGLKCGQVVKITRKSDTAGTYDTYRCVV 318
ARY+GLK GQVVKI R S+TAG Y TYR VV
Sbjct: 175 ----------------ARYFGLKRGQVVKIIRPSETAGRYVTYRYVV 205