BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00005566
         (1269 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003536743.1| PREDICTED: E3 ubiquitin-protein ligase CIP8-...   312   1e-82
ref|XP_003555834.1| PREDICTED: E3 ubiquitin-protein ligase CIP8-...   310   4e-82
ref|XP_002510553.1| zinc finger protein, putative [Ricinus commu...   309   9e-82
ref|XP_002273623.1| PREDICTED: E3 ubiquitin-protein ligase CIP8 ...   272   2e-70
ref|NP_201297.1| E3 ubiquitin-protein ligase CIP8 [Arabidopsis t...   239   1e-60

>ref|XP_003536743.1| PREDICTED: E3 ubiquitin-protein ligase CIP8-like isoform 1 [Glycine
           max] gi|356536437|ref|XP_003536744.1| PREDICTED: E3
           ubiquitin-protein ligase CIP8-like isoform 2 [Glycine
           max]
          Length = 333

 Score =  312 bits (800), Expect = 1e-82
 Identities = 161/301 (53%), Positives = 196/301 (65%), Gaps = 13/301 (4%)
 Frame = +2

Query: 116 YWCYHCDKRVSVETLTDLPDIICFECKNGFVEVISAPSSSTTNR--NHEPSFSNQFLQIL 289
           YWCYHC+KRVS+ETL +LPD++C ECKNGFVE I  PS S +    + +P F +QFLQ+L
Sbjct: 21  YWCYHCEKRVSIETLANLPDVVCGECKNGFVESIHTPSRSRSPSASSDDPYFGSQFLQVL 80

Query: 290 RLIAEAARXXXXXXXXXXXXXXXXXESGDFLRIELNGWDNEEDEIXXXXXXXXXXXXXXX 469
           RLIA++AR                    DFLRIEL GWDN+E+                 
Sbjct: 81  RLIAQSARDDDASPPPPPSRSP----ENDFLRIELGGWDNDEENDNDNNDDEEFEEHEEA 136

Query: 470 XXXXXX----------VXXXXXXXXXXXXXDFASRATSNRNRILDWSEILMGLEDHTMEF 619
                           +             D A+R  S RNRILDW+EILMGLED+++EF
Sbjct: 137 EDRSGNEDPHGRDDEDLRRRRRELLRLRIRDLATRTRSMRNRILDWAEILMGLEDNSIEF 196

Query: 620 RVEVPEWDGYAGNPEDYVDAAGYEALLQTLAENDGA-RRGAPPASKSAVSGLNTVEIAAE 796
           R+++PE D Y GNPEDYVDAA YEALL TLAE+DG  RRGAPPASK+AV  L TV+IA+E
Sbjct: 197 RLQLPESDRYVGNPEDYVDAAEYEALLHTLAESDGGGRRGAPPASKAAVEALPTVKIASE 256

Query: 797 EEGYVCAICKEAVLVGEKAKKLPCGHGYHGDCIVTWLGSRNTCPVCRFELPTEDPEYEEQ 976
            E   CAICK+ + VG+ AK+LPCGHGYHGDCIV WL SRN+CPVCR+ELPT+D EYEE+
Sbjct: 257 SEAVACAICKDLLGVGDLAKRLPCGHGYHGDCIVPWLSSRNSCPVCRYELPTDDKEYEEE 316

Query: 977 R 979
           R
Sbjct: 317 R 317


>ref|XP_003555834.1| PREDICTED: E3 ubiquitin-protein ligase CIP8-like [Glycine max]
          Length = 337

 Score =  310 bits (795), Expect = 4e-82
 Identities = 161/302 (53%), Positives = 196/302 (64%), Gaps = 14/302 (4%)
 Frame = +2

Query: 116 YWCYHCDKRVSVETLTDLPDIICFECKNGFVEVISAPSSSTTNR--NHEPSFSNQFLQIL 289
           YWCYHC+KRVSVETL +LPD++C ECKNGFVE +  PS S +    + +P F +QFLQ+L
Sbjct: 17  YWCYHCEKRVSVETLANLPDVVCGECKNGFVESMPTPSRSRSPSASSDDPYFGSQFLQVL 76

Query: 290 RLIAEAARXXXXXXXXXXXXXXXXXESGDFLRIELNGWDNEEDEIXXXXXXXXXXXXXXX 469
           RLIA++AR                    DFLRIEL GWDN+E+                 
Sbjct: 77  RLIAQSARDDDASPPPPPSRSP----ENDFLRIELGGWDNDEENENDDDNGDEEFEEHEE 132

Query: 470 XXXXXX-----------VXXXXXXXXXXXXXDFASRATSNRNRILDWSEILMGLEDHTME 616
                            +             D A+R  S RNRILDW+EILMGLED+++E
Sbjct: 133 AEDRSGNEDPHGGDDEDLRRRRRELLRLRIRDLATRTRSMRNRILDWAEILMGLEDNSIE 192

Query: 617 FRVEVPEWDGYAGNPEDYVDAAGYEALLQTLAENDGA-RRGAPPASKSAVSGLNTVEIAA 793
           FR+++PE D Y GNPEDYVDAA YEALLQTLAE+DG  RRGAPPASK+A+  L TV+IA+
Sbjct: 193 FRLQLPESDRYVGNPEDYVDAAEYEALLQTLAESDGGGRRGAPPASKAALEALPTVKIAS 252

Query: 794 EEEGYVCAICKEAVLVGEKAKKLPCGHGYHGDCIVTWLGSRNTCPVCRFELPTEDPEYEE 973
           E E   CAICK+ + VG+ AK+LPCGH YHGDCIV WL SRN+CPVCRFELPT+D EYEE
Sbjct: 253 ESEAVACAICKDLLGVGDAAKRLPCGHRYHGDCIVPWLSSRNSCPVCRFELPTDDKEYEE 312

Query: 974 QR 979
           +R
Sbjct: 313 ER 314


>ref|XP_002510553.1| zinc finger protein, putative [Ricinus communis]
           gi|223551254|gb|EEF52740.1| zinc finger protein,
           putative [Ricinus communis]
          Length = 358

 Score =  309 bits (792), Expect = 9e-82
 Identities = 167/319 (52%), Positives = 199/319 (62%), Gaps = 27/319 (8%)
 Frame = +2

Query: 113 QYWCYHCDKRVSVETLTDLPDIICFECKNGFVEVISAPS-------SSTTNRNHEPSFSN 271
           QYWCY C KRVS ETL +  D+IC ECKNGFVE+I+A +       S T+++  + +F +
Sbjct: 21  QYWCYRCIKRVSTETLANESDVICLECKNGFVELITAAATPPSNTPSLTSDQADDSTFGS 80

Query: 272 QFLQILRLIAEAARXXXXXXXXXXXXXXXXXESGDFLRIELNGWDN---EEDEIXXXXXX 442
           QFLQ+LR+IA+AAR                    DFLRIELNGWDN   EED+       
Sbjct: 81  QFLQMLRIIAQAAREEDTPPPLPQDPY----SEDDFLRIELNGWDNDEDEEDDKDSNKNE 136

Query: 443 XXXXXXXXXXXXXXXVXXXXXXXXXXXXXD-----------------FASRATSNRNRIL 571
                          +             +                 FA+RA S RNRIL
Sbjct: 137 NEENRDEGEHDDGEDISDNETEEENREDEEEDMRRRRRDFLRLRIREFATRARSGRNRIL 196

Query: 572 DWSEILMGLEDHTMEFRVEVPEWDGYAGNPEDYVDAAGYEALLQTLAENDGARRGAPPAS 751
           DW+EILMGLED+++EF +EVPE D Y GNPEDYVDAAGYEALLQ LAE+D  RRGAPPAS
Sbjct: 197 DWAEILMGLEDNSIEFLLEVPETDRYIGNPEDYVDAAGYEALLQNLAESDDGRRGAPPAS 256

Query: 752 KSAVSGLNTVEIAAEEEGYVCAICKEAVLVGEKAKKLPCGHGYHGDCIVTWLGSRNTCPV 931
           KS+VS L T  I  EE+  VCAICK+ V VGE   KLPC HGYHGDCIV WLGSRN+CPV
Sbjct: 257 KSSVSALPTAVITLEEQTRVCAICKDMVNVGETETKLPCDHGYHGDCIVPWLGSRNSCPV 316

Query: 932 CRFELPTEDPEYEEQRQKR 988
           CRFELPT+D EYEE+R+K+
Sbjct: 317 CRFELPTDDTEYEEERKKK 335


>ref|XP_002273623.1| PREDICTED: E3 ubiquitin-protein ligase CIP8 isoform 1 [Vitis
           vinifera] gi|359492263|ref|XP_003634390.1| PREDICTED: E3
           ubiquitin-protein ligase CIP8 isoform 2 [Vitis vinifera]
           gi|147826680|emb|CAN66109.1| hypothetical protein
           VITISV_007725 [Vitis vinifera]
          Length = 334

 Score =  272 bits (695), Expect = 2e-70
 Identities = 152/309 (49%), Positives = 182/309 (58%), Gaps = 18/309 (5%)
 Frame = +2

Query: 116 YWCYHCDKRVSVETLTDLPDIICFECKNGFVEVI----SAPSSSTTNRNHEPSFSNQFLQ 283
           YWCY CDK VS+ETL DLPD+IC ECK GFVE I    +AP     ++  E S    F +
Sbjct: 13  YWCYQCDKHVSIETLPDLPDVICNECKTGFVETIGVAPTAPEPRNADQIDERSLVYAFTR 72

Query: 284 ILRLIAEAARXXXXXXXXXXXXXXXXXESGDFLRIELNGWDN-------------EEDEI 424
            LR IA+                       DFLRI+L+GWDN             EE E 
Sbjct: 73  RLRHIAQPPSDDEDPPSLPPDHA----SEDDFLRIDLDGWDNDEDEDVSENDGEGEEQEE 128

Query: 425 XXXXXXXXXXXXXXXXXXXXXVXXXXXXXXXXXXXDFASRATSNRNRILDWSEILMGLED 604
                                              + A+ A+ N N +LDW+ ILM  ED
Sbjct: 129 EEDRSDNENEGNVYRPEIDRDHLRRRREMLRRRIHNLAA-ASGNPNAVLDWA-ILMASED 186

Query: 605 HTMEFRVEVPEWDGYAGNPEDYVDAAGYEALLQTLAENDGA-RRGAPPASKSAVSGLNTV 781
            T+EF  ++PE +GY GNPEDYVDAAGYE LLQ LAE+DGA RRGAPPASKSA+S L +V
Sbjct: 187 STIEFHFQMPEPEGYTGNPEDYVDAAGYEELLQNLAESDGAARRGAPPASKSAISALPSV 246

Query: 782 EIAAEEEGYVCAICKEAVLVGEKAKKLPCGHGYHGDCIVTWLGSRNTCPVCRFELPTEDP 961
           EI +EE+   CAICK+ V + E A+KLPCGHGYHGDCIV WL SRN+CPVCRFELPT+D 
Sbjct: 247 EIKSEEQVLACAICKDVVSICEIARKLPCGHGYHGDCIVPWLNSRNSCPVCRFELPTDDS 306

Query: 962 EYEEQRQKR 988
           EYEE+R+KR
Sbjct: 307 EYEEERKKR 315


>ref|NP_201297.1| E3 ubiquitin-protein ligase CIP8 [Arabidopsis thaliana]
           gi|61211690|sp|Q9SPL2.1|CIP8_ARATH RecName: Full=E3
           ubiquitin-protein ligase CIP8; AltName:
           Full=COP1-interacting protein 8
           gi|5929906|gb|AAD56636.1|AF162150_1 COP1-interacting
           protein CIP8 [Arabidopsis thaliana]
           gi|8843756|dbj|BAA97304.1| COP1-interacting protein CIP8
           [Arabidopsis thaliana] gi|19698865|gb|AAL91168.1|
           COP1-interacting protein CIP8 [Arabidopsis thaliana]
           gi|30984560|gb|AAP42743.1| At5g64920 [Arabidopsis
           thaliana] gi|111146876|gb|ABH07378.1| COP1-interacting
           protein 8 [Arabidopsis thaliana]
           gi|332010587|gb|AED97970.1| E3 ubiquitin-protein ligase
           CIP8 [Arabidopsis thaliana]
          Length = 334

 Score =  239 bits (609), Expect = 1e-60
 Identities = 139/312 (44%), Positives = 181/312 (58%), Gaps = 21/312 (6%)
 Frame = +2

Query: 116 YWCYHCDKRVSVETLTDLPDIICFECKNGFVEVIS-APSSSTTNRNHEP----------S 262
           +WCYHC+KRV VETL D   ++C EC  GFVE I   P++ ++    +P          S
Sbjct: 15  HWCYHCNKRVVVETLDDF--VVCCECNKGFVESIQPTPAAYSSPAPPQPLSPDLNVEDSS 72

Query: 263 FSNQFLQILRLIAEAARXXXXXXXXXXXXXXXXXESGDFLRIELNGW---DNEEDEIXXX 433
             + FLQ+LRL+A A                      DF R+ELN     D++EDE    
Sbjct: 73  IGSHFLQMLRLLAHAPSQRSPPRHLDVLSY-----EDDFFRLELNSRNEIDDDEDEDEDD 127

Query: 434 XXXXXXXXXXXXXXXXXXVXXXXXXXXXXXXXDFASRATSNRNRILDWSEILMGLEDHTM 613
                                              +++ + RNRILDW+EILMG+ED+++
Sbjct: 128 GDEEEEDEEENLTVNDEEDEEDDLRRRNRFPLT-TTQSRTGRNRILDWAEILMGIEDNSI 186

Query: 614 EFRVEVPEWDGYAGNPEDYVD-AAGYEALLQTLAENDGA----RRGAPPASKSAVSGLNT 778
           EFR+E    D YAGNP DY+D AAGYEALLQ LAE DG     RRGAPPA+KSA+  L T
Sbjct: 187 EFRMES---DRYAGNPADYIDDAAGYEALLQNLAEGDGGGGGGRRGAPPAAKSAIEALET 243

Query: 779 VEIAAEEEGYV--CAICKEAVLVGEKAKKLPCGHGYHGDCIVTWLGSRNTCPVCRFELPT 952
            E+++ E   V  CA+CK+ +++GE  KKLPCGH YHGDCIV WLG+RN+CPVCRF+L T
Sbjct: 244 FEVSSSEGEMVMVCAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTRNSCPVCRFQLET 303

Query: 953 EDPEYEEQRQKR 988
           +D EYEE+R+KR
Sbjct: 304 DDAEYEEERKKR 315