BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00005499
         (1682 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283479.1| PREDICTED: E3 ubiquitin-protein ligase HERC2...   714   0.0  
ref|XP_002329325.1| predicted protein [Populus trichocarpa] gi|2...   699   0.0  
ref|XP_002516745.1| Ran GTPase binding protein, putative [Ricinu...   696   0.0  
ref|XP_004141502.1| PREDICTED: LOW QUALITY PROTEIN: probable E3 ...   678   0.0  
ref|XP_004156186.1| PREDICTED: LOW QUALITY PROTEIN: probable E3 ...   677   0.0  

>ref|XP_002283479.1| PREDICTED: E3 ubiquitin-protein ligase HERC2 [Vitis vinifera]
            gi|296087299|emb|CBI33673.3| unnamed protein product
            [Vitis vinifera]
          Length = 395

 Score =  714 bits (1844), Expect = 0.0
 Identities = 340/389 (87%), Positives = 358/389 (92%), Gaps = 1/389 (0%)
 Frame = -3

Query: 1401 ILAWGSGEDGQLGIGNNEDKEWVCTVKSLESQKVSSVVAGSRNSLAICEDGKLFTWGWNQ 1222
            I++WGSGEDGQLGIGNNE+KEWVC VK+L +Q V SVVAGSRNSLAICEDGKLFTWGWNQ
Sbjct: 8    IISWGSGEDGQLGIGNNEEKEWVCAVKALAAQNVCSVVAGSRNSLAICEDGKLFTWGWNQ 67

Query: 1221 RGTLGHPPETKTENIPSQVKALANVKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 1042
            RGTLGHPPETKTENIPSQVKALAN KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE
Sbjct: 68   RGTLGHPPETKTENIPSQVKALANAKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 127

Query: 1041 PERKDDATKAVVRRDIVIPQRCAPKLSVRQVAAGGTHSVVLTHKGHVWTWGQPWPPGDIK 862
            PERKDD T   +RRDI IPQRCA KLSVRQVAAGGTHSVVLT +GHVWTWGQPWPPGDIK
Sbjct: 128  PERKDD-TGRPLRRDITIPQRCASKLSVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIK 186

Query: 861  QISTPVRVQGLEKVKLIAVGAFHNLALLEDGVLWAWGNNEYGQLGTGDTQPRSQPVPVQG 682
            QISTPVRVQGLEKV+LIAVGAFHNLALLEDG+LWAWGNNEYGQLGTGDTQPRSQP+ VQG
Sbjct: 187  QISTPVRVQGLEKVRLIAVGAFHNLALLEDGILWAWGNNEYGQLGTGDTQPRSQPIAVQG 246

Query: 681  LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDDKSSKMVPQRVQLLVGEDIV 502
            LS LTLVDIAAGGWHSTALTDDG VYGWGRGEHGRLGFGDDKSSKMVPQ+VQLLV E+IV
Sbjct: 247  LSDLTLVDIAAGGWHSTALTDDGGVYGWGRGEHGRLGFGDDKSSKMVPQKVQLLVEENIV 306

Query: 501  QVSCGGTHSVALTRDGRLFSVGRGDHGRLGYGRKVTTGHPMNVPINIPQPRNLSGIGT-G 325
            Q+SCGGTHSVALTRDGR+FS GRGDHGRLGYGRKVTTGHPM VPIN+P   NLSG G  G
Sbjct: 307  QISCGGTHSVALTRDGRMFSFGRGDHGRLGYGRKVTTGHPMEVPINLPPATNLSGSGAGG 366

Query: 324  HWCAKVVACGGRHTLSIATWQTDDESEQL 238
            HWC+K+VACGGRHTL+I  W    E EQL
Sbjct: 367  HWCSKLVACGGRHTLAIVEWLA-HEPEQL 394



 Score = 84.0 bits (206), Expect = 1e-13
 Identities = 44/156 (28%), Positives = 77/156 (49%)
 Frame = -3

Query: 1404 IILAWGSGEDGQLGIGNNEDKEWVCTVKSLESQKVSSVVAGSRNSLAICEDGKLFTWGWN 1225
            I+ AWG+ E GQLG G+ + +     V+ L    +  + AG  +S A+ +DG ++ WG  
Sbjct: 218  ILWAWGNNEYGQLGTGDTQPRSQPIAVQGLSDLTLVDIAAGGWHSTALTDDGGVYGWGRG 277

Query: 1224 QRGTLGHPPETKTENIPSQVKALANVKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 1045
            + G LG   +  ++ +P +V+ L    IVQ + GG H +A+   GR +++G  ++G+ G 
Sbjct: 278  EHGRLGFGDDKSSKMVPQKVQLLVEENIVQISCGGTHSVALTRDGRMFSFGRGDHGRLGY 337

Query: 1044 EPERKDDATKAVVRRDIVIPQRCAPKLSVRQVAAGG 937
                     K      + +P    P  ++    AGG
Sbjct: 338  -------GRKVTTGHPMEVPINLPPATNLSGSGAGG 366


>ref|XP_002329325.1| predicted protein [Populus trichocarpa] gi|222870779|gb|EEF07910.1|
            predicted protein [Populus trichocarpa]
          Length = 392

 Score =  699 bits (1803), Expect = 0.0
 Identities = 334/389 (85%), Positives = 353/389 (90%), Gaps = 2/389 (0%)
 Frame = -3

Query: 1413 TNPIILAWGSGEDGQLGIGNNEDKEWVCTVKSLESQKVSSVVAGSRNSLAICEDGKLFTW 1234
            T   ++AWGSGEDGQLGIGNNE+KEWVC VK+LE  KV SVVAGSRNSLAIC+DGKLFTW
Sbjct: 3    TESSVIAWGSGEDGQLGIGNNEEKEWVCIVKALEPYKVRSVVAGSRNSLAICDDGKLFTW 62

Query: 1233 GWNQRGTLGHPPETKTENIPSQVKALANVKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 1054
            GWNQRGTLGHPPETKTENIPSQVKALANV IVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ
Sbjct: 63   GWNQRGTLGHPPETKTENIPSQVKALANVNIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 122

Query: 1053 CGEEPERKDDATKAVVRRDIVIPQRCAPKLSVRQVAAGGTHSVVLTHKGHVWTWGQPWPP 874
            CGEEPERKDD T   +RRDIVIPQRCA KL VRQVAAGGTHSVVLT +GHVW+WGQPWPP
Sbjct: 123  CGEEPERKDD-TGRPLRRDIVIPQRCASKLVVRQVAAGGTHSVVLTREGHVWSWGQPWPP 181

Query: 873  GDIKQISTPVRVQGLEKVKLIAVGAFHNLALLEDGVLWAWGNNEYGQLGTGDTQPRSQPV 694
            GDIKQIS PVRVQGLE+V+LIAVGAFHNLAL EDG LWAWGNNEYGQLGTGDTQPRSQP+
Sbjct: 182  GDIKQISVPVRVQGLERVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPI 241

Query: 693  PVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD-DKSSKMVPQRVQLLV 517
             VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD DKSSKMVPQRV LLV
Sbjct: 242  TVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQRVNLLV 301

Query: 516  GEDIVQVSCGGTHSVALTRDGRLFSVGRGDHGRLGYGRKVTTGHPMNVPINIPQPRNLSG 337
            GEDIVQVSCGGTHSVALTRDGR+++ GRGDHGRLGYGRKVTTG PM VPI+IP P+NL+ 
Sbjct: 302  GEDIVQVSCGGTHSVALTRDGRMYTFGRGDHGRLGYGRKVTTGQPMEVPIDIPPPKNLTD 361

Query: 336  IG-TGHWCAKVVACGGRHTLSIATWQTDD 253
             G  G W AK+VA GGRHTL+I  W T D
Sbjct: 362  SGDAGRWIAKLVASGGRHTLAIVEWHTGD 390


>ref|XP_002516745.1| Ran GTPase binding protein, putative [Ricinus communis]
            gi|223544118|gb|EEF45643.1| Ran GTPase binding protein,
            putative [Ricinus communis]
          Length = 393

 Score =  696 bits (1797), Expect = 0.0
 Identities = 330/390 (84%), Positives = 353/390 (90%), Gaps = 3/390 (0%)
 Frame = -3

Query: 1413 TNPIILAWGSGEDGQLGIGNNEDKEWVCTVKSLESQKVSSVVAGSRNSLAICEDGKLFTW 1234
            T+  ++AWG+GEDGQLGIG NE+KEWVC V +LE  KV SVVAGSRNSLAIC+DGKLFTW
Sbjct: 3    THTSLIAWGAGEDGQLGIGINEEKEWVCVVNALEPYKVRSVVAGSRNSLAICDDGKLFTW 62

Query: 1233 GWNQRGTLGHPPETKTENIPSQVKALANVKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 1054
            GWNQRGTLGHP ETKTENIPSQVKAL NV IVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ
Sbjct: 63   GWNQRGTLGHPAETKTENIPSQVKALNNVNIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 122

Query: 1053 CGEEPERKDDATKAVVRRDIVIPQRCAPKLSVRQVAAGGTHSVVLTHKGHVWTWGQPWPP 874
            CGEEPERKDD  K + RRDIVIPQRCAPKL VRQVAAGGTHSVVLT +GHVWTWGQPWPP
Sbjct: 123  CGEEPERKDDTGKTL-RRDIVIPQRCAPKLVVRQVAAGGTHSVVLTREGHVWTWGQPWPP 181

Query: 873  GDIKQISTPVRVQGLEKVKLIAVGAFHNLALLEDGVLWAWGNNEYGQLGTGDTQPRSQPV 694
            GDIKQIS PVRVQGLEKVKLIAVGAFHNLAL EDG LWAWGNNEYGQLGTGDTQPRSQP+
Sbjct: 182  GDIKQISVPVRVQGLEKVKLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPI 241

Query: 693  PVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD-DKSSKMVPQRVQLLV 517
            PVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD DKSSKMVPQ+V LL 
Sbjct: 242  PVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA 301

Query: 516  GEDIVQVSCGGTHSVALTRDGRLFSVGRGDHGRLGYGRKVTTGHPMNVPINIPQPRNLSG 337
            GEDIVQ+SCGGTHSVALT+DGR+FS GRGDHGRLGYG+KVTTG P+ VP +IP P++LSG
Sbjct: 302  GEDIVQLSCGGTHSVALTQDGRMFSFGRGDHGRLGYGKKVTTGQPVEVPTDIPPPKSLSG 361

Query: 336  I--GTGHWCAKVVACGGRHTLSIATWQTDD 253
                 GHW AK+VACGGRHTL+I  W+ D+
Sbjct: 362  TEEAEGHWIAKLVACGGRHTLAIVEWKVDE 391


>ref|XP_004141502.1| PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase
            HERC1-like [Cucumis sativus]
          Length = 390

 Score =  678 bits (1749), Expect = 0.0
 Identities = 319/387 (82%), Positives = 350/387 (90%), Gaps = 1/387 (0%)
 Frame = -3

Query: 1401 ILAWGSGEDGQLGIGNNEDKEWVCTVKSLESQKVSSVVAGSRNSLAICEDGKLFTWGWNQ 1222
            I+AWGSGEDGQLG+GNNE++EWVC +K+LESQ V SVVAGSRNSLAI EDGKLFTWGWNQ
Sbjct: 7    IIAWGSGEDGQLGLGNNEEREWVCAIKALESQNVCSVVAGSRNSLAITEDGKLFTWGWNQ 66

Query: 1221 RGTLGHPPETKTENIPSQVKALANVKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 1042
            RGTLGHP  TK+EN+PSQVKAL+NVKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE
Sbjct: 67   RGTLGHPAGTKSENVPSQVKALSNVKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 126

Query: 1041 PERKDDATKAVVRRDIVIPQRCAPKLSVRQVAAGGTHSVVLTHKGHVWTWGQPWPPGDIK 862
            PE+KD+ T    RRDI IPQRCAPKL VRQVAAGGTHSVVLT +GHVWTWGQPWPPGDI 
Sbjct: 127  PEKKDN-TGRPPRRDIAIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIT 185

Query: 861  QISTPVRVQGLEKVKLIAVGAFHNLALLEDGVLWAWGNNEYGQLGTGDTQPRSQPVPVQG 682
            QIS PVRVQGL+ V+LIAVGAFHNLAL EDG LWAWGNNEYGQLGTGDTQPRSQP+PVQG
Sbjct: 186  QISVPVRVQGLDMVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQG 245

Query: 681  LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD-DKSSKMVPQRVQLLVGEDI 505
            LSGLTLVDIAAGGWHSTALTD+GEVYGWGRGEHGRLGFGD DKSSKMVPQ+VQLL GE+I
Sbjct: 246  LSGLTLVDIAAGGWHSTALTDNGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVQLLSGEEI 305

Query: 504  VQVSCGGTHSVALTRDGRLFSVGRGDHGRLGYGRKVTTGHPMNVPINIPQPRNLSGIGTG 325
            VQ+SCGGTHSVA+T DGR+FS GRGDHGRLGYGRKVTTG P  VPI+IP PR  +    G
Sbjct: 306  VQISCGGTHSVAVTSDGRMFSFGRGDHGRLGYGRKVTTGQPEEVPIDIPPPRGRT--ENG 363

Query: 324  HWCAKVVACGGRHTLSIATWQTDDESE 244
            HW AK+VACGGRHTL++  W+++D ++
Sbjct: 364  HWIAKLVACGGRHTLALVQWKSEDXAK 390


>ref|XP_004156186.1| PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase
            HERC1-like [Cucumis sativus]
          Length = 390

 Score =  677 bits (1747), Expect = 0.0
 Identities = 319/387 (82%), Positives = 349/387 (90%), Gaps = 1/387 (0%)
 Frame = -3

Query: 1401 ILAWGSGEDGQLGIGNNEDKEWVCTVKSLESQKVSSVVAGSRNSLAICEDGKLFTWGWNQ 1222
            I+AWGSGEDGQLG+GNNE++EWVC +K+LESQ V SVVAGSRNSLAI EDGKLFTWGWNQ
Sbjct: 7    IIAWGSGEDGQLGLGNNEEREWVCAIKALESQNVCSVVAGSRNSLAITEDGKLFTWGWNQ 66

Query: 1221 RGTLGHPPETKTENIPSQVKALANVKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 1042
            RGTLGHP  TK+EN+PSQVKAL+NVKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE
Sbjct: 67   RGTLGHPAGTKSENVPSQVKALSNVKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 126

Query: 1041 PERKDDATKAVVRRDIVIPQRCAPKLSVRQVAAGGTHSVVLTHKGHVWTWGQPWPPGDIK 862
            PE+KD+ T    RRDI IPQRCAPKL VRQVAAGGTHSVVLT +GHVWTWGQPWPPGDI 
Sbjct: 127  PEKKDN-TGRPPRRDIAIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIT 185

Query: 861  QISTPVRVQGLEKVKLIAVGAFHNLALLEDGVLWAWGNNEYGQLGTGDTQPRSQPVPVQG 682
            QIS PVRVQGL+ V+LIAVGAFHNLAL EDG LWAWGNNEYGQLGTGDTQPRSQP+PVQG
Sbjct: 186  QISVPVRVQGLDMVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIPVQG 245

Query: 681  LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD-DKSSKMVPQRVQLLVGEDI 505
            LSGLTLVDIAAGGWHSTALTD+GEVYGWGRGEHGRLGFGD DKSSKMVPQ+VQLL GE+I
Sbjct: 246  LSGLTLVDIAAGGWHSTALTDNGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVQLLSGEEI 305

Query: 504  VQVSCGGTHSVALTRDGRLFSVGRGDHGRLGYGRKVTTGHPMNVPINIPQPRNLSGIGTG 325
            VQ+SCGGTHSVA+T DGR+FS GRGDHGRLGYGRKVTTG P  VPI+IP PR  +    G
Sbjct: 306  VQISCGGTHSVAVTSDGRMFSFGRGDHGRLGYGRKVTTGQPEEVPIDIPPPRGRT--ENG 363

Query: 324  HWCAKVVACGGRHTLSIATWQTDDESE 244
            HW AK+VACGGRHTL++  W+ +D ++
Sbjct: 364  HWIAKLVACGGRHTLALVQWKPEDXAK 390