BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00005484
         (1071 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002527995.1| proteasome subunit beta type 6,9, putative [...   383   e-104
ref|XP_002283195.1| PREDICTED: proteasome subunit beta type-6 [V...   380   e-103
ref|XP_002266488.1| PREDICTED: proteasome subunit beta type-6 [V...   376   e-102
ref|NP_194858.1| proteasome subunit beta type-6 [Arabidopsis tha...   376   e-102
ref|XP_002869337.1| hypothetical protein ARALYDRAFT_328593 [Arab...   372   e-101

>ref|XP_002527995.1| proteasome subunit beta type 6,9, putative [Ricinus communis]
           gi|223532621|gb|EEF34407.1| proteasome subunit beta type
           6,9, putative [Ricinus communis]
          Length = 231

 Score =  383 bits (983), Expect = e-104
 Identities = 188/230 (81%), Positives = 205/230 (89%)
 Frame = -3

Query: 880 MNINAPHSMGTTIIGVSYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYLCRSGSAA 701
           M++ APHSMGTTIIGV+YNGGVVLGADSRTSTGMYVANRASDKITQLTDNVY+CRSGSAA
Sbjct: 1   MDLKAPHSMGTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAA 60

Query: 700 DSQILSDYVRHFLHQHTIQSGQPATVKVAANLVRLFSYSNKNMLQTGLIIGGWDKYEGGK 521
           DSQI+SDYVR+FLHQHTIQ GQPATVKVAANLVRL SY+NKNML+TGLI+GGWDKY+GGK
Sbjct: 61  DSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLISYNNKNMLETGLIVGGWDKYDGGK 120

Query: 520 IYSVPLGGTITEQPXXXXXXXXXXXXXXLDQAWKEGMTKDEAENLVVKAVSLAIARDGAS 341
           IY +PLGGTI EQP               DQAWKEGMTKDEAE LVVKAVSLA+ARDGAS
Sbjct: 121 IYGIPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEQLVVKAVSLAMARDGAS 180

Query: 340 GGVVRTVIINSEGVARNFYPGDSLPLWYDELEPHTSLLDILSAGNPEPMS 191
           GGVVRTVIINSEGV RNFYPGDSLPLW++ELEP  SLLDIL+A +PEPM+
Sbjct: 181 GGVVRTVIINSEGVTRNFYPGDSLPLWHEELEPQNSLLDILNASSPEPMN 230


>ref|XP_002283195.1| PREDICTED: proteasome subunit beta type-6 [Vitis vinifera]
          Length = 231

 Score =  380 bits (975), Expect = e-103
 Identities = 185/230 (80%), Positives = 205/230 (89%)
 Frame = -3

Query: 880 MNINAPHSMGTTIIGVSYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYLCRSGSAA 701
           M++NAPH+MGTTIIGV+YNGGVVLGADSRTSTGMYVANRASDKITQLTDNVY+CRSGSAA
Sbjct: 1   MDLNAPHTMGTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYICRSGSAA 60

Query: 700 DSQILSDYVRHFLHQHTIQSGQPATVKVAANLVRLFSYSNKNMLQTGLIIGGWDKYEGGK 521
           DSQI+SDYVR+FLHQHTIQ GQPATVKVAANLVRL SY+NKNML+TGLI+GGWDKYEGGK
Sbjct: 61  DSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLVSYNNKNMLETGLIVGGWDKYEGGK 120

Query: 520 IYSVPLGGTITEQPXXXXXXXXXXXXXXLDQAWKEGMTKDEAENLVVKAVSLAIARDGAS 341
           IY++PLGGTI EQP               DQAWKEGMTKDEAE LVVKAVSLAIARDGAS
Sbjct: 121 IYAIPLGGTIIEQPFAIGGSGSTYLYGFFDQAWKEGMTKDEAEQLVVKAVSLAIARDGAS 180

Query: 340 GGVVRTVIINSEGVARNFYPGDSLPLWYDELEPHTSLLDILSAGNPEPMS 191
           GGV+RTVIINSEGV RNFYPGDSLPLW++EL P  SLL++L + +PEPM+
Sbjct: 181 GGVIRTVIINSEGVTRNFYPGDSLPLWHEELPPQNSLLELLHSSSPEPMN 230


>ref|XP_002266488.1| PREDICTED: proteasome subunit beta type-6 [Vitis vinifera]
           gi|297736018|emb|CBI24056.3| unnamed protein product
           [Vitis vinifera]
          Length = 232

 Score =  376 bits (966), Expect = e-102
 Identities = 186/228 (81%), Positives = 201/228 (88%)
 Frame = -3

Query: 877 NINAPHSMGTTIIGVSYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYLCRSGSAAD 698
           ++N PHSMGTTIIGV+YNGGVVLGADSRTSTG+YVANRASDKITQLTDNVYLCRSGSAAD
Sbjct: 3   HLNQPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAAD 62

Query: 697 SQILSDYVRHFLHQHTIQSGQPATVKVAANLVRLFSYSNKNMLQTGLIIGGWDKYEGGKI 518
           SQILSDYVR++LHQHTIQ GQPATVKVAANLVRL SY+NKNMLQTGLI+GGWDK+EGGKI
Sbjct: 63  SQILSDYVRYYLHQHTIQLGQPATVKVAANLVRLISYNNKNMLQTGLIVGGWDKHEGGKI 122

Query: 517 YSVPLGGTITEQPXXXXXXXXXXXXXXLDQAWKEGMTKDEAENLVVKAVSLAIARDGASG 338
           Y VPLGGTI EQP               DQ WKEGMTKDEAE LVVKAVSLAIARDGASG
Sbjct: 123 YGVPLGGTILEQPFAIGGSGSSYLYGFFDQEWKEGMTKDEAEKLVVKAVSLAIARDGASG 182

Query: 337 GVVRTVIINSEGVARNFYPGDSLPLWYDELEPHTSLLDILSAGNPEPM 194
           GVVRTV INSEGV +NFYPGD+LPLW++ELEP  SLLDILS+ +PEPM
Sbjct: 183 GVVRTVTINSEGVTKNFYPGDTLPLWHEELEPQNSLLDILSSSSPEPM 230


>ref|NP_194858.1| proteasome subunit beta type-6 [Arabidopsis thaliana]
           gi|334187059|ref|NP_001190879.1| proteasome subunit beta
           type-6 [Arabidopsis thaliana]
           gi|82581522|sp|Q8LD27.2|PSB6_ARATH RecName:
           Full=Proteasome subunit beta type-6; AltName: Full=20S
           proteasome beta subunit A-1; AltName: Full=Proteasome
           component D; AltName: Full=Proteasome subunit beta
           type-1; Flags: Precursor gi|2511594|emb|CAA74028.1|
           multicatalytic endopeptidase complex, proteasome
           precursor, beta subunit [Arabidopsis thaliana]
           gi|2827525|emb|CAA16533.1| multicatalytic endopeptidase
           complex, proteasome precursor, beta subunit [Arabidopsis
           thaliana] gi|3421099|gb|AAC32065.1| 20S proteasome
           subunit PBA1 [Arabidopsis thaliana]
           gi|7270032|emb|CAB79848.1| multicatalytic endopeptidase
           complex, proteasome precursor, beta subunit [Arabidopsis
           thaliana] gi|15450505|gb|AAK96545.1| AT4g31300/F8F16_120
           [Arabidopsis thaliana] gi|16323318|gb|AAL15414.1|
           AT4g31300/F8F16_120 [Arabidopsis thaliana]
           gi|332660487|gb|AEE85887.1| proteasome subunit beta
           type-6 [Arabidopsis thaliana]
           gi|332660489|gb|AEE85889.1| proteasome subunit beta
           type-6 [Arabidopsis thaliana]
          Length = 233

 Score =  376 bits (966), Expect = e-102
 Identities = 181/231 (78%), Positives = 203/231 (87%)
 Frame = -3

Query: 883 DMNINAPHSMGTTIIGVSYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYLCRSGSA 704
           D+N++APHSMGTTIIGV+YNGGVVLGADSRTSTGMYVANRASDKITQLTDNVY+CRSGSA
Sbjct: 2   DLNLDAPHSMGTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSA 61

Query: 703 ADSQILSDYVRHFLHQHTIQSGQPATVKVAANLVRLFSYSNKNMLQTGLIIGGWDKYEGG 524
           ADSQ++SDYVR+FLHQHTIQ GQPATVKV+ANL+R+ +Y+NKNMLQTGLI+GGWDKYEGG
Sbjct: 62  ADSQVVSDYVRYFLHQHTIQHGQPATVKVSANLIRMLAYNNKNMLQTGLIVGGWDKYEGG 121

Query: 523 KIYSVPLGGTITEQPXXXXXXXXXXXXXXLDQAWKEGMTKDEAENLVVKAVSLAIARDGA 344
           KIY +PLGGT+ EQP               DQAWK+ MTK+EAE LVVKAVSLAIARDGA
Sbjct: 122 KIYGIPLGGTVVEQPFAIGGSGSSYLYGFFDQAWKDNMTKEEAEQLVVKAVSLAIARDGA 181

Query: 343 SGGVVRTVIINSEGVARNFYPGDSLPLWYDELEPHTSLLDILSAGNPEPMS 191
           SGGVVRTVIINSEGV RNFYPGD L LW++ELEP  SLLDIL+A  PEPM+
Sbjct: 182 SGGVVRTVIINSEGVTRNFYPGDKLQLWHEELEPQNSLLDILNAAGPEPMA 232


>ref|XP_002869337.1| hypothetical protein ARALYDRAFT_328593 [Arabidopsis lyrata subsp.
           lyrata] gi|297315173|gb|EFH45596.1| hypothetical protein
           ARALYDRAFT_328593 [Arabidopsis lyrata subsp. lyrata]
          Length = 234

 Score =  372 bits (956), Expect = e-101
 Identities = 182/232 (78%), Positives = 203/232 (87%), Gaps = 1/232 (0%)
 Frame = -3

Query: 883 DMNINAPHSMGTTIIGVSYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYLCRSGSA 704
           D+N++APHSMGTTIIGV+YNGGVVLGADSRTSTGMYVANRASDKITQLTDNVY+CRSGSA
Sbjct: 2   DLNLDAPHSMGTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSA 61

Query: 703 ADSQILSDYVRHFLHQHTIQSGQPATVKVAANLVRLFSYSNK-NMLQTGLIIGGWDKYEG 527
           ADSQ++SDYVR+FLHQHTIQ GQPATVKV+ANL+R+ +Y+NK NMLQTGLI+GGWDKYEG
Sbjct: 62  ADSQVVSDYVRYFLHQHTIQLGQPATVKVSANLIRMLAYNNKQNMLQTGLIVGGWDKYEG 121

Query: 526 GKIYSVPLGGTITEQPXXXXXXXXXXXXXXLDQAWKEGMTKDEAENLVVKAVSLAIARDG 347
           GKIY +PLGGT+ EQP               DQAWKE MTK+EAE LVVKAVSLAIARDG
Sbjct: 122 GKIYGIPLGGTVVEQPFAIGGSGSSYLYGFFDQAWKENMTKEEAEQLVVKAVSLAIARDG 181

Query: 346 ASGGVVRTVIINSEGVARNFYPGDSLPLWYDELEPHTSLLDILSAGNPEPMS 191
           ASGGVVRTVIINSEGV RNFYPGD L LW++ELEP  SLLDIL+A  PEPM+
Sbjct: 182 ASGGVVRTVIINSEGVTRNFYPGDKLQLWHEELEPQNSLLDILNAAGPEPMA 233