BLASTX nr result
ID: Cimicifuga21_contig00005265
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00005265
(1747 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI17549.3| unnamed protein product [Vitis vinifera] 517 e-144
ref|XP_002268044.2| PREDICTED: DNA-directed RNA polymerase III s... 502 e-139
ref|XP_002310208.1| predicted protein [Populus trichocarpa] gi|2... 468 e-129
ref|XP_004164787.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 461 e-127
ref|XP_004149158.1| PREDICTED: DNA-directed RNA polymerase III s... 461 e-127
>emb|CBI17549.3| unnamed protein product [Vitis vinifera]
Length = 688
Score = 517 bits (1332), Expect = e-144
Identities = 293/586 (50%), Positives = 381/586 (65%), Gaps = 25/586 (4%)
Frame = +3
Query: 51 FFTPSPLDSNAQLYVMQHPLRPCWRPYELDDRCKEVRVKPKTGQVEVDLKLDVDS-NYDD 227
FFTP P D N ++YV+Q+PLRP WRPYEL +RC EVRVKP + +VEVDL +DVDS NYD
Sbjct: 109 FFTPPPTDDNTKIYVLQYPLRPYWRPYELGERCDEVRVKPASAEVEVDLSIDVDSKNYDP 168
Query: 228 DAPDRLRITKQTLS-SWRPPLKTSYAVGVLKGNKLHLNPVHAVVQLRPSMEHLTPGRLK- 401
DAP+ R+ KQTLS SW+PP T Y VGVL GNKLHLNP+HAVVQLRPSME+L+ G K
Sbjct: 169 DAPNAQRMKKQTLSTSWKPPQTTGYVVGVLMGNKLHLNPIHAVVQLRPSMEYLSSGGAKR 228
Query: 402 KNSATENVGIAINSDEITXXXXXXXXXXLDKTAKPSTEQVTDAEESWISLDYHGMDSNAR 581
KN+ T + A+ + +K EQ TDA ESW+ L YH +S+
Sbjct: 229 KNNVTGDTNSAVKLEVSNEEESVGSLKKQNKIMGILDEQNTDAAESWVPLKYHSSESD-- 286
Query: 582 SLATRYRQKMTSEESSIIEFAMSPYEYINSLCPVS-STENDRDRSLSKRALLSLPLEERF 758
+ RY QKM +E++S I+F MSPYEY+NSLCP S +++R + LS+R LLS+PLEERF
Sbjct: 287 -FSARYLQKMVAEDNSPIQFLMSPYEYVNSLCPPGVSNDDNRSKGLSRRFLLSMPLEERF 345
Query: 759 KKWLSEGPQLNRFDALKHLAPDDANEDVLEVLQRHACLVQGLWVSKSSLF--QLKDVQRL 932
K L EGP ++RF ALKH APD++ EDVL VL +HA LVQGLWV KSSL + V L
Sbjct: 346 KTLLCEGPPVHRFSALKHFAPDNSVEDVLGVLTKHAHLVQGLWVPKSSLLFPGGQGVAPL 405
Query: 933 ARDYVLLLFKKDKVITRKDLD-EYRVQKEAEGYLKLFAVYKPSFNGWKLKVPKDVSFVEN 1109
ARDY+LLLF K +I +D + K +G+L + AV +PSF WK K P DVSF++
Sbjct: 406 ARDYILLLFSKGPLINYSQVDVPGSLNKALKGFLSILAVERPSFRDWKFKEPTDVSFMKL 465
Query: 1110 YPDIVRMQEKLWQIEEKKIEQDLQ-KQKSGSVVKNSLRPGMNSIPRTSGNTDQGAKVHGN 1286
+PDIVR Q ++W+ EK+I + + G V KNS +P + + TS +D GA N
Sbjct: 466 HPDIVREQRRVWESLEKQITDIIHGGGRRGPVTKNSGKPSIANKTGTSTKSD-GATRATN 524
Query: 1287 GTASSRPMTLSDETREALPKALQALLRKHSVCSLQLICQGLREQGILKADT--------- 1439
GT R +S ETREALPKAL+ + R H VCS QLICQ LR+ + K+ +
Sbjct: 525 GTPVRR-TAMSAETREALPKALEEVFRLHKVCSFQLICQALRDLAVSKSTSPKVDPRTFV 583
Query: 1440 -------APPPELPSVIDQIAVKIRDVYVLKSLGDPTFDPLRGVIIDLFCA-EPNAKLKK 1595
AP EL ++I + A + VYV K+ +PLR V++DLFC EPNAKLK+
Sbjct: 584 AAAYGADAPQEELHAIISKYATTVHGVYVWKTSEHSEHNPLRKVVVDLFCGKEPNAKLKR 643
Query: 1596 AEIVEAAKIQLKRDINPKEYTQVMNQLCVSVKGNAWILKSGDGNSK 1733
A+I+EAAKI LK++I EY +V+++LC S +G+ W+LKSGDG K
Sbjct: 644 ADIMEAAKIALKKEITTHEYNKVVSELCES-RGSLWVLKSGDGKPK 688
>ref|XP_002268044.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Vitis
vinifera]
Length = 672
Score = 502 bits (1292), Expect = e-139
Identities = 288/587 (49%), Positives = 377/587 (64%), Gaps = 26/587 (4%)
Frame = +3
Query: 51 FFTPSPLDSNAQLYVMQHPLRPCWRPYELDDRCKEVRVKPKTGQVEVDLKLDVDS-NYDD 227
FFTP P D N ++YV+Q+PLRP WRPYEL +RC EVRVKP + +VEVDL +DVDS NYD
Sbjct: 109 FFTPPPTDDNTKIYVLQYPLRPYWRPYELGERCDEVRVKPASAEVEVDLSIDVDSKNYDP 168
Query: 228 DAPDRLRITKQTLS-SWRPPLKTSYAVGVLKGNKLHLNPVHAVVQLRPSMEHLTPGRLK- 401
DAP+ R+ KQTLS SW+PP T Y VGVL GNKLHLNP+HAVVQLRPSME+L+ G K
Sbjct: 169 DAPNAQRMKKQTLSTSWKPPQTTGYVVGVLMGNKLHLNPIHAVVQLRPSMEYLSSGGAKR 228
Query: 402 KNSATENVGIAINSDEITXXXXXXXXXXLDKTAKPSTEQVTDAE-ESWISLDYHGMDSNA 578
KN+ T + A+ + E V + +SW+ L YH +S+
Sbjct: 229 KNNVTGDTNSAVKLE-----------------VSNEEESVGSLKKQSWVPLKYHSSESD- 270
Query: 579 RSLATRYRQKMTSEESSIIEFAMSPYEYINSLCPVS-STENDRDRSLSKRALLSLPLEER 755
+ RY QKM +E++S I+F MSPYEY+NSLCP S +++R + LS+R LLS+PLEER
Sbjct: 271 --FSARYLQKMVAEDNSPIQFLMSPYEYVNSLCPPGVSNDDNRSKGLSRRFLLSMPLEER 328
Query: 756 FKKWLSEGPQLNRFDALKHLAPDDANEDVLEVLQRHACLVQGLWVSKSSLF--QLKDVQR 929
FK L EGP ++RF ALKH APD++ EDVL VL +HA LVQGLWV KSSL + V
Sbjct: 329 FKTLLCEGPPVHRFSALKHFAPDNSVEDVLGVLTKHAHLVQGLWVPKSSLLFPGGQGVAP 388
Query: 930 LARDYVLLLFKKDKVITRKDLD-EYRVQKEAEGYLKLFAVYKPSFNGWKLKVPKDVSFVE 1106
LARDY+LLLF K +I +D + K +G+L + AV +PSF WK K P DVSF++
Sbjct: 389 LARDYILLLFSKGPLINYSQVDVPGSLNKALKGFLSILAVERPSFRDWKFKEPTDVSFMK 448
Query: 1107 NYPDIVRMQEKLWQIEEKKIEQDLQ-KQKSGSVVKNSLRPGMNSIPRTSGNTDQGAKVHG 1283
+PDIVR Q ++W+ EK+I + + G V KNS +P + + TS +D GA
Sbjct: 449 LHPDIVREQRRVWESLEKQITDIIHGGGRRGPVTKNSGKPSIANKTGTSTKSD-GATRAT 507
Query: 1284 NGTASSRPMTLSDETREALPKALQALLRKHSVCSLQLICQGLREQGILKADT-------- 1439
NGT R +S ETREALPKAL+ + R H VCS QLICQ LR+ + K+ +
Sbjct: 508 NGTPVRR-TAMSAETREALPKALEEVFRLHKVCSFQLICQALRDLAVSKSTSPKVDPRTF 566
Query: 1440 --------APPPELPSVIDQIAVKIRDVYVLKSLGDPTFDPLRGVIIDLFCA-EPNAKLK 1592
AP EL ++I + A + VYV K+ +PLR V++DLFC EPNAKLK
Sbjct: 567 VAAAYGADAPQEELHAIISKYATTVHGVYVWKTSEHSEHNPLRKVVVDLFCGKEPNAKLK 626
Query: 1593 KAEIVEAAKIQLKRDINPKEYTQVMNQLCVSVKGNAWILKSGDGNSK 1733
+A+I+EAAKI LK++I EY +V+++LC S +G+ W+LKSGDG K
Sbjct: 627 RADIMEAAKIALKKEITTHEYNKVVSELCES-RGSLWVLKSGDGKPK 672
>ref|XP_002310208.1| predicted protein [Populus trichocarpa] gi|222853111|gb|EEE90658.1|
predicted protein [Populus trichocarpa]
Length = 667
Score = 468 bits (1203), Expect = e-129
Identities = 279/586 (47%), Positives = 352/586 (60%), Gaps = 28/586 (4%)
Frame = +3
Query: 51 FFTPSPLDSNAQLYVMQHPLRPCWRPYELDDRCKEVRVKPKTGQVEVDLKLDVDSNYDDD 230
++TPS +D N QLYVMQ+PLRPCWRPYELD+RCKEVRVKP++ +VEVDL +D NYD D
Sbjct: 118 YYTPS-VDPNTQLYVMQYPLRPCWRPYELDERCKEVRVKPESTEVEVDLSIDDTKNYDPD 176
Query: 231 APDRLRITKQTLSS-WRPPLKTSYAVGVLKGNKLHLNPVHAVVQLRPSMEHLTPGRLK-K 404
RL + KQTLSS W PP T YAVGVL GNKLHLNP+HAVVQLRPSM++L+ G K K
Sbjct: 177 IASRLNMKKQTLSSSWSPPPATGYAVGVLIGNKLHLNPIHAVVQLRPSMDYLSSGNSKGK 236
Query: 405 NSATENVGIAINSDEITXXXXXXXXXXLDKTAKPSTEQVTDAEESWISLDYHGMDSNARS 584
+AT + ++ K EQ D EESWI L YHG S+
Sbjct: 237 KNAT-------SGEDSNEGKPLGLPKKQSKQMSSGNEQKPDVEESWIPLKYHGSKSD--- 286
Query: 585 LATRYRQKMTSEESSIIEFAMSPYEYINSLCPVSSTENDRDRSLSKRALLSLPLEERFKK 764
L++RY Q M + ESS IEFAM+PY+Y++SLCP S N + S+R LLSLPLEER K+
Sbjct: 287 LSSRYLQNMVAPESSTIEFAMNPYDYMSSLCPGISNNNIKLNGPSRRVLLSLPLEERIKR 346
Query: 765 WLSEGPQLNRFDALKHLAPDDANEDVLEVLQRHACLVQGLWVSKSSLF-----QLKDVQR 929
EGP ++RF AL+HL P+D+ ED+L VLQ + LVQGLWV K+SL + V+
Sbjct: 347 LFLEGPPIHRFAALRHLIPNDSIEDLLIVLQEYGQLVQGLWVPKTSLLFPNPKPTEKVKL 406
Query: 930 LARDYVLLLFKKDKVITRKDLDEYRVQKEAEGYLKLFAVYKPSFNGWKLKVPKDVSFVEN 1109
ARDY+LLLF K V+T +L+ + +L +FAV +PSF WK K D FVE
Sbjct: 407 AARDYILLLFSKSLVVTPSELNVPMKPLILKSFLNIFAVERPSFKDWKFKENVDTLFVEL 466
Query: 1110 YPDIVRMQEKLWQIEEKKIEQDLQKQKSGSVVKNSLRPGMNSIPRTSGNTDQGAKVHGNG 1289
YPDIVR QE+ W++ K I S D+ K
Sbjct: 467 YPDIVRKQEQAWEVMGKNI---------------------------SAAFDRAGKSVSKN 499
Query: 1290 TASSRPMTLSDETREALPKALQALLRKHSVC--SLQLICQGLREQGIL-----KAD---- 1436
+ T++DETREAL KAL +L+ H VC Q+ICQGLR+ I KAD
Sbjct: 500 VITKPKKTMTDETREALRKALPKVLQTHKVCRYGFQMICQGLRQLAISQSTLPKADPRIA 559
Query: 1437 -------TAPPPELPSVIDQIAVKIRDVYVLKSLGD-PTFDPL-RGVIIDLFCAE-PNAK 1586
APP EL VI ++A I YVLKS + P FDPL R V+I LF A PNA
Sbjct: 560 VAAASGAEAPPEELQEVISEVATNIHGFYVLKSSPEHPDFDPLSRKVVIGLFLARGPNAN 619
Query: 1587 LKKAEIVEAAKIQLKRDINPKEYTQVMNQLCVSVKGNAWILKSGDG 1724
+KK+E+ AA+++LKR+ + EY +VM LC S KG+AW+LKSGDG
Sbjct: 620 IKKSEVQAAARLELKREPSNSEYIKVMTDLCES-KGSAWVLKSGDG 664
>ref|XP_004164787.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit RPC5-like [Cucumis sativus]
Length = 702
Score = 461 bits (1186), Expect = e-127
Identities = 270/582 (46%), Positives = 362/582 (62%), Gaps = 22/582 (3%)
Frame = +3
Query: 54 FTPSPLDSNAQLYVMQHPLRPCWRPYELDDRCKEVRVKPKTGQVEVDLKLDVDSN-YDDD 230
FTPS +DSN++LYV+Q+PLRP WRPYE + RC EVRVKP TG+VEVDL +D++SN YD+
Sbjct: 128 FTPS-VDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEVDLNVDIESNNYDNK 186
Query: 231 APDRLRITKQTL-SSWRPPLKTSYAVGVLKGNKLHLNPVHAVVQLRPSMEHLTPGRLKKN 407
A ++ KQTL SSW+PPL TSYAVG+L GNKLHLNPVHAVVQLRPS EHL G K+
Sbjct: 187 ADGTFQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFEHLNSGGPKRK 246
Query: 408 SATENVGIAINSDEITXXXXXXXXXXLDKTAKPSTEQVTDAEESWISLDYHGMDSNARSL 587
+ + S+E K PSTE T EE WI L Y+G++S+ L
Sbjct: 247 NNVR-ADSDVKSEEHVDVNSAGASRKQKKQTGPSTEVKTRDEECWIPLKYYGLESD---L 302
Query: 588 ATRYRQKMTSEESSIIEFAMSPYEYINSLCPVSSTENDRDRSLSKRALLSLPLEERFKKW 767
+TR+ Q M S+ S ++F+MSP++Y++SLCP +ST ++ + SK+ LLSL LEER KK
Sbjct: 303 STRHLQSMVSQTVSPMQFSMSPHDYMDSLCPGTSTSGNKPKGPSKKYLLSLSLEERIKKL 362
Query: 768 LSEGPQLNRFDALKHLAPDDANEDVLEVLQRHACLVQGLWVSKSSLFQLKDVQ-RLARDY 944
L+EGP + RF ALKH APD E+ +E LQ++A LVQGLWV KS +D R ARD+
Sbjct: 363 LTEGPPVQRFSALKHYAPDYETEEFIETLQQYAQLVQGLWVPKSLFLIPQDGSGRCARDF 422
Query: 945 VLLLFKKDKVITRKDLDEYR-VQKEAEGYLKLFAVYKPSFNGWKLKVPKDVSFVENYPDI 1121
VL LF K+ V++ ++ + ++ + +L LF V +P+F WK K D F+ N+ I
Sbjct: 423 VLFLFSKNPVVSSSQINVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTDRLFLSNHVRI 482
Query: 1122 VRMQEKLWQIEEKKIEQDLQKQKSGSVVKNSLRPGMNSIPRTSGNTDQGAKVHGNGTASS 1301
QE+LW EK + + +PG+ ++DQ N +
Sbjct: 483 AEKQEELWNNVEKGFTFLRSIKSVHHANAATGKPGVVPKLEKQVSSDQTTTKSSNAPL-N 541
Query: 1302 RPMTLSDETREALPKALQALLRKHSVCSLQLICQGLREQGIL-----KADT--------- 1439
R +SDETREALPKALQ L + H VCS QLICQGLR+ + KAD
Sbjct: 542 RKGAMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAYG 601
Query: 1440 --APPPELPSVIDQIAVKIRDVYVLKSLGD-PTFDPLRGVIIDLFCAE-PNAKLKKAEIV 1607
APP EL +I Q+A +I +YVL S + P +DPLR V+I L P A LKKA+++
Sbjct: 602 VDAPPDELXKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVL 661
Query: 1608 EAAKIQLKRDINPKEYTQVMNQLCVSVKGNAWILKSGDGNSK 1733
EA+K +L R IN EY++VMN++C+S G++W LKSGDGNS+
Sbjct: 662 EASKHELGRAINSNEYSKVMNEICIS-HGSSWTLKSGDGNSR 702
>ref|XP_004149158.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like [Cucumis
sativus]
Length = 702
Score = 461 bits (1186), Expect = e-127
Identities = 270/582 (46%), Positives = 362/582 (62%), Gaps = 22/582 (3%)
Frame = +3
Query: 54 FTPSPLDSNAQLYVMQHPLRPCWRPYELDDRCKEVRVKPKTGQVEVDLKLDVDSN-YDDD 230
FTPS +DSN++LYV+Q+PLRP WRPYE + RC EVRVKP TG+VEVDL +D++SN YD+
Sbjct: 128 FTPS-VDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEVDLNVDIESNNYDNK 186
Query: 231 APDRLRITKQTL-SSWRPPLKTSYAVGVLKGNKLHLNPVHAVVQLRPSMEHLTPGRLKKN 407
A ++ KQTL SSW+PPL TSYAVG+L GNKLHLNPVHAVVQLRPS EHL G K+
Sbjct: 187 ADGTFQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFEHLNSGGPKRK 246
Query: 408 SATENVGIAINSDEITXXXXXXXXXXLDKTAKPSTEQVTDAEESWISLDYHGMDSNARSL 587
+ + S+E K PSTE T EE WI L Y+G++S+ L
Sbjct: 247 NNVR-ADSDVKSEEHVDVNSAGASRKQKKQTGPSTEVKTRDEECWIPLKYYGLESD---L 302
Query: 588 ATRYRQKMTSEESSIIEFAMSPYEYINSLCPVSSTENDRDRSLSKRALLSLPLEERFKKW 767
+TR+ Q M S+ S ++F+MSP++Y++SLCP +ST ++ + SK+ LLSL LEER KK
Sbjct: 303 STRHLQSMVSQTVSPMQFSMSPHDYMDSLCPGTSTSGNKPKGPSKKYLLSLSLEERIKKL 362
Query: 768 LSEGPQLNRFDALKHLAPDDANEDVLEVLQRHACLVQGLWVSKSSLFQLKDVQ-RLARDY 944
L+EGP + RF ALKH APD E+ +E LQ++A LVQGLWV KS +D R ARD+
Sbjct: 363 LTEGPPVQRFSALKHYAPDYETEEFIETLQQYAQLVQGLWVPKSLFLIPQDGSGRCARDF 422
Query: 945 VLLLFKKDKVITRKDLDEYR-VQKEAEGYLKLFAVYKPSFNGWKLKVPKDVSFVENYPDI 1121
VL LF K+ V++ ++ + ++ + +L LF V +P+F WK K D F+ N+ I
Sbjct: 423 VLFLFSKNPVVSSSQINVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTDRLFLSNHVRI 482
Query: 1122 VRMQEKLWQIEEKKIEQDLQKQKSGSVVKNSLRPGMNSIPRTSGNTDQGAKVHGNGTASS 1301
QE+LW EK + + +PG+ ++DQ N +
Sbjct: 483 AEKQEELWNNVEKGFTFLRSIKSVHHANAATGKPGVVPKLEKQVSSDQTTTKSSNAPL-N 541
Query: 1302 RPMTLSDETREALPKALQALLRKHSVCSLQLICQGLREQGIL-----KADT--------- 1439
R +SDETREALPKALQ L + H VCS QLICQGLR+ + KAD
Sbjct: 542 RKGAMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAYG 601
Query: 1440 --APPPELPSVIDQIAVKIRDVYVLKSLGD-PTFDPLRGVIIDLFCAE-PNAKLKKAEIV 1607
APP EL +I Q+A +I +YVL S + P +DPLR V+I L P A LKKA+++
Sbjct: 602 VDAPPDELKKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVL 661
Query: 1608 EAAKIQLKRDINPKEYTQVMNQLCVSVKGNAWILKSGDGNSK 1733
EA+K +L R IN EY++VMN++C+S G++W LKSGDGNS+
Sbjct: 662 EASKHELGRAINSNEYSKVMNEICIS-HGSSWTLKSGDGNSR 702