BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00002834
         (2151 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-...   565   e-158
emb|CBI40014.3| unnamed protein product [Vitis vinifera]              564   e-158
ref|XP_002319746.1| predicted protein [Populus trichocarpa] gi|2...   528   e-147
ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative ...   526   e-147
ref|XP_002325455.1| predicted protein [Populus trichocarpa] gi|2...   517   e-144

>ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
          Length = 578

 Score =  565 bits (1456), Expect = e-158
 Identities = 317/579 (54%), Positives = 374/579 (64%), Gaps = 6/579 (1%)
 Frame = -1

Query: 1911 MACLLPQFKCPTDSTSVQFRIHSHTFFLKSRQPVCCRPQCSL-----PXXXXXXXXVDME 1747
            M+CLLPQFKCP D+ S   ++H      K+R+ +  R QC+L     P        +D+E
Sbjct: 1    MSCLLPQFKCPPDTFSTHPKLHILCKSPKNREAIYFRVQCALSTTSPPLSTSTTAVLDIE 60

Query: 1746 KLRLPSFESHLSSVA-ERPLTYTGAIGPPLKGNLESTLAKEFIPSGKEXXXXXXXXXXXX 1570
            KLRLPS ESH +SVA  RP TY G +GPP + N E+TLA+E + + +E            
Sbjct: 61   KLRLPSLESHSNSVAAHRPWTYIGVVGPPTEANFEATLARETLLTSEEAVIAAAAAEAVA 120

Query: 1569 XXXXXXXXXXXXALMFGNEASANSDYKAPDISSDTEFNKLKGAMLTDMELLGTGGLDPLG 1390
                        A + G   SA S+ K     S  + ++ +    T+ E +G  G D +G
Sbjct: 121  LAKAAVKVAKDAARLVGKNNSAKSETKPASFLSGDDTSQFRRIQFTETERIGILG-DSVG 179

Query: 1389 VEGIQEEENLAQFSSEDFDNLNPTDXXXXXXXXXXXXSIAVRSGRQTEXXXXXXXXXXXX 1210
             E    + N  Q  +ED D+L PT             SI VRS RQ E            
Sbjct: 180  AETGMVDYNSLQDVTEDSDDLEPTLEELELLEAEFSKSIVVRSNRQVERKARRARAAEKA 239

Query: 1209 XXXXXXXXXXXXXXXXRPAVQEVDYSDPLRYXXXXXXXXXXXXXXXXXXXXXGIQDXXXX 1030
                            R ++QEVDYSDPLRY                     GIQD    
Sbjct: 240  SAGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSEGIQDLLKL 299

Query: 1029 XXXXXXXXERCGSEPSFSQWAVAAGADQRTLRKRLNHGIQCKDKMIKSNIRLVISIAKNY 850
                    ER G +P+F+QWA AAG DQ+TLR+R N+GI+CKDKMIKSNIRLVISIAKNY
Sbjct: 300  EKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLVISIAKNY 359

Query: 849  QGAGMNLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF 670
            QGAGMN+QDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF
Sbjct: 360  QGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF 419

Query: 669  HMVEATYRVREAKKQLYSENGRHPNDKEIAEATGLTMKRLSAVMLTPKAPRSLDQKIGFN 490
            HMVEATYRV+EA+KQLYSENGRHPN++E+AEATGL+MKRL+AV+LTPKAPRSLDQKIG N
Sbjct: 420  HMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLNAVLLTPKAPRSLDQKIGIN 479

Query: 489  LNMKPSEVIADPEAETGEEMLIKQFMKQDLEKVLNSLNPRENQVVRWRFGLEDGRMKTLQ 310
             N+KPSEVIADP+AET EE+LIKQFM++DLEKVLNSLNPRE QV+RWR+GLEDGR KTLQ
Sbjct: 480  QNLKPSEVIADPDAETAEELLIKQFMREDLEKVLNSLNPREKQVIRWRYGLEDGRTKTLQ 539

Query: 309  EIGELMGVSRERVRQIESCAFXXXXXXXXXXXXXQYVVS 193
            EIGELMGVSRER+RQIESCAF             QY+VS
Sbjct: 540  EIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLVS 578


>emb|CBI40014.3| unnamed protein product [Vitis vinifera]
          Length = 575

 Score =  564 bits (1454), Expect = e-158
 Identities = 317/579 (54%), Positives = 374/579 (64%), Gaps = 6/579 (1%)
 Frame = -1

Query: 1911 MACLLPQFKCPTDSTSVQFRIHSHTFFLKSRQPVCCRPQCSL-----PXXXXXXXXVDME 1747
            M+CLLPQFKCP D+ S   ++H      K+R+ +  R QC+L     P        +D+E
Sbjct: 1    MSCLLPQFKCPPDTFSTHPKLH---ILSKNREAIYFRVQCALSTTSPPLSTSTTAVLDIE 57

Query: 1746 KLRLPSFESHLSSVA-ERPLTYTGAIGPPLKGNLESTLAKEFIPSGKEXXXXXXXXXXXX 1570
            KLRLPS ESH +SVA  RP TY G +GPP + N E+TLA+E + + +E            
Sbjct: 58   KLRLPSLESHSNSVAAHRPWTYIGVVGPPTEANFEATLARETLLTSEEAVIAAAAAEAVA 117

Query: 1569 XXXXXXXXXXXXALMFGNEASANSDYKAPDISSDTEFNKLKGAMLTDMELLGTGGLDPLG 1390
                        A + G   SA S+ K     S  + ++ +    T+ E +G  G D +G
Sbjct: 118  LAKAAVKVAKDAARLVGKNNSAKSETKPASFLSGDDTSQFRRIQFTETERIGILG-DSVG 176

Query: 1389 VEGIQEEENLAQFSSEDFDNLNPTDXXXXXXXXXXXXSIAVRSGRQTEXXXXXXXXXXXX 1210
             E    + N  Q  +ED D+L PT             SI VRS RQ E            
Sbjct: 177  AETGMVDYNSLQDVTEDSDDLEPTLEELELLEAEFSKSIVVRSNRQVERKARRARAAEKA 236

Query: 1209 XXXXXXXXXXXXXXXXRPAVQEVDYSDPLRYXXXXXXXXXXXXXXXXXXXXXGIQDXXXX 1030
                            R ++QEVDYSDPLRY                     GIQD    
Sbjct: 237  SAGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSEGIQDLLKL 296

Query: 1029 XXXXXXXXERCGSEPSFSQWAVAAGADQRTLRKRLNHGIQCKDKMIKSNIRLVISIAKNY 850
                    ER G +P+F+QWA AAG DQ+TLR+R N+GI+CKDKMIKSNIRLVISIAKNY
Sbjct: 297  EKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLVISIAKNY 356

Query: 849  QGAGMNLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF 670
            QGAGMN+QDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF
Sbjct: 357  QGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF 416

Query: 669  HMVEATYRVREAKKQLYSENGRHPNDKEIAEATGLTMKRLSAVMLTPKAPRSLDQKIGFN 490
            HMVEATYRV+EA+KQLYSENGRHPN++E+AEATGL+MKRL+AV+LTPKAPRSLDQKIG N
Sbjct: 417  HMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLNAVLLTPKAPRSLDQKIGIN 476

Query: 489  LNMKPSEVIADPEAETGEEMLIKQFMKQDLEKVLNSLNPRENQVVRWRFGLEDGRMKTLQ 310
             N+KPSEVIADP+AET EE+LIKQFM++DLEKVLNSLNPRE QV+RWR+GLEDGR KTLQ
Sbjct: 477  QNLKPSEVIADPDAETAEELLIKQFMREDLEKVLNSLNPREKQVIRWRYGLEDGRTKTLQ 536

Query: 309  EIGELMGVSRERVRQIESCAFXXXXXXXXXXXXXQYVVS 193
            EIGELMGVSRER+RQIESCAF             QY+VS
Sbjct: 537  EIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLVS 575


>ref|XP_002319746.1| predicted protein [Populus trichocarpa] gi|222858122|gb|EEE95669.1|
            predicted protein [Populus trichocarpa]
          Length = 567

 Score =  528 bits (1359), Expect = e-147
 Identities = 304/556 (54%), Positives = 352/556 (63%), Gaps = 1/556 (0%)
 Frame = -1

Query: 1911 MACLLPQFKCPTDSTSVQFRIHSHTFFLKSRQPVCCRPQCSLPXXXXXXXXVDMEKLRLP 1732
            M+CLLPQFKC  D+ SV FR   H     ++ P     QC L         +D+EKLRLP
Sbjct: 1    MSCLLPQFKCQPDTFSVHFRNLQHHGTNHTQLP-----QCVLSSASPSTAVLDLEKLRLP 55

Query: 1731 SFESHLSSV-AERPLTYTGAIGPPLKGNLESTLAKEFIPSGKEXXXXXXXXXXXXXXXXX 1555
            S E H  S+ A RP TY G IGP  K    ++LA E + +  E                 
Sbjct: 56   SLEPHSDSISANRPWTYIGGIGPQKKPPFGTSLAAETLIANDEAVIAAAAAEAVALARAA 115

Query: 1554 XXXXXXXALMFGNEASANSDYKAPDISSDTEFNKLKGAMLTDMELLGTGGLDPLGVEGIQ 1375
                   A M  N +S   + K P  S+   F+ +  ++LT+ E     G D +  E   
Sbjct: 116  VKVAKDAAEMAKNYSSMKKETKIPIASTTDSFSSM-WSLLTEKERADIIG-DSVSAETRL 173

Query: 1374 EEENLAQFSSEDFDNLNPTDXXXXXXXXXXXXSIAVRSGRQTEXXXXXXXXXXXXXXXXX 1195
             EE   Q+ +E++D L PT              IAVRS RQTE                 
Sbjct: 174  REEYSVQYPTEEYDCLEPTQEELALLQKQLSEGIAVRSKRQTERKARRARAAEKAAANVV 233

Query: 1194 XXXXXXXXXXXRPAVQEVDYSDPLRYXXXXXXXXXXXXXXXXXXXXXGIQDXXXXXXXXX 1015
                       R  +QEVD SDPLR+                     GIQD         
Sbjct: 234  SVKSGSTSKKKRVPLQEVDQSDPLRFFRGASSSSRLLSATEEVELSEGIQDLLKLERIEE 293

Query: 1014 XXXERCGSEPSFSQWAVAAGADQRTLRKRLNHGIQCKDKMIKSNIRLVISIAKNYQGAGM 835
               ER G EPSF+QWA AAG DQ TLRKRLN+GI CKDKMIKSN+RLVISIAKNYQG GM
Sbjct: 294  ELKERFGGEPSFAQWAAAAGVDQLTLRKRLNYGILCKDKMIKSNVRLVISIAKNYQGTGM 353

Query: 834  NLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 655
            NLQDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAVRKSLSD+SRTIRLPFHMV+A
Sbjct: 354  NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDRSRTIRLPFHMVDA 413

Query: 654  TYRVREAKKQLYSENGRHPNDKEIAEATGLTMKRLSAVMLTPKAPRSLDQKIGFNLNMKP 475
            TYRV+EA+KQLYSENGRHP+DKE+AEA GL+MKRLSAV+LTPKAPRSLDQK+GFN+++K 
Sbjct: 414  TYRVKEARKQLYSENGRHPDDKEVAEAAGLSMKRLSAVLLTPKAPRSLDQKMGFNMDLKL 473

Query: 474  SEVIADPEAETGEEMLIKQFMKQDLEKVLNSLNPRENQVVRWRFGLEDGRMKTLQEIGEL 295
            SEV ADPEAET E++L+K+FMK+DL KVL SL+PRENQVVRWRFG+EDGRMKTLQEIGEL
Sbjct: 474  SEVTADPEAETAEDLLMKEFMKKDLAKVLGSLSPRENQVVRWRFGMEDGRMKTLQEIGEL 533

Query: 294  MGVSRERVRQIESCAF 247
            MGVSRERVRQIE  AF
Sbjct: 534  MGVSRERVRQIELSAF 549


>ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
            gi|223536699|gb|EEF38340.1| RNA polymerase sigma factor
            rpoD1, putative [Ricinus communis]
          Length = 569

 Score =  526 bits (1356), Expect = e-147
 Identities = 308/563 (54%), Positives = 354/563 (62%), Gaps = 8/563 (1%)
 Frame = -1

Query: 1911 MACLLPQFKCPTDSTSVQFRIHSHTFF-----LKSRQPVCCRPQC--SLPXXXXXXXXVD 1753
            M+CLLPQFKC  D+ S+ FR +   F       KSR+P+  R QC  S          +D
Sbjct: 2    MSCLLPQFKCQPDTFSIHFRANYFHFSNVTQSTKSREPIYYRAQCILSTTSPSTSTAVLD 61

Query: 1752 MEKLRLPSFESHLSSVAER-PLTYTGAIGPPLKGNLESTLAKEFIPSGKEXXXXXXXXXX 1576
            +EKLRLPSFE+   S+A   P TY             STLA E + +  E          
Sbjct: 62   LEKLRLPSFEAPSDSIAPNSPWTYA---------TFGSTLATETLITSDEAVIAAAAAEA 112

Query: 1575 XXXXXXXXXXXXXXALMFGNEASANSDYKAPDISSDTEFNKLKGAMLTDMELLGTGGLDP 1396
                          AL+  N  SA ++ K   ++S +  +  +    T+ E     G D 
Sbjct: 113  VALARAAVKVAKDAALLVKNFPSAETESK---LTSPSTIDASRWPQFTETERARIIG-DS 168

Query: 1395 LGVEGIQEEENLAQFSSEDFDNLNPTDXXXXXXXXXXXXSIAVRSGRQTEXXXXXXXXXX 1216
            +  E    EE+  Q S ++ D L  T              IAVRS RQTE          
Sbjct: 169  VATETGPREESSMQSSIKESDYLELTHKELELLQKQLSEGIAVRSRRQTERKARRARAVE 228

Query: 1215 XXXXXXXXXXXXXXXXXXRPAVQEVDYSDPLRYXXXXXXXXXXXXXXXXXXXXXGIQDXX 1036
                              R ++QEVDYSDPLRY                      IQD  
Sbjct: 229  KAASSVVSVKPGSTSKKKRGSLQEVDYSDPLRYLRGTTSTSRLLTASEELELSAAIQDLL 288

Query: 1035 XXXXXXXXXXERCGSEPSFSQWAVAAGADQRTLRKRLNHGIQCKDKMIKSNIRLVISIAK 856
                      ER G +P+F+QWA AAG DQRTLRKR+NHG  CKDKMIKSNIRLVISIAK
Sbjct: 289  KLERLQEELAERYGGQPTFAQWAAAAGVDQRTLRKRINHGTICKDKMIKSNIRLVISIAK 348

Query: 855  NYQGAGMNLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 676
            NYQGAGMNLQDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL
Sbjct: 349  NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 408

Query: 675  PFHMVEATYRVREAKKQLYSENGRHPNDKEIAEATGLTMKRLSAVMLTPKAPRSLDQKIG 496
            PFHMVEATYRV+EA+KQLYSENGRHP+D+E+AEA GL+MKRLSAV+LTPKAPRSLDQKIG
Sbjct: 409  PFHMVEATYRVKEARKQLYSENGRHPDDEEVAEAAGLSMKRLSAVLLTPKAPRSLDQKIG 468

Query: 495  FNLNMKPSEVIADPEAETGEEMLIKQFMKQDLEKVLNSLNPRENQVVRWRFGLEDGRMKT 316
             N+++KPSEVIADPEAET EE+L+KQFMKQDLEKVLN+LNPRE QVVRWRFGLEDGRMKT
Sbjct: 469  MNMDLKPSEVIADPEAETAEELLMKQFMKQDLEKVLNTLNPRETQVVRWRFGLEDGRMKT 528

Query: 315  LQEIGELMGVSRERVRQIESCAF 247
            LQEIGE+MGVSRER+RQIES AF
Sbjct: 529  LQEIGEIMGVSRERIRQIESSAF 551


>ref|XP_002325455.1| predicted protein [Populus trichocarpa] gi|222862330|gb|EEE99836.1|
            predicted protein [Populus trichocarpa]
          Length = 564

 Score =  517 bits (1332), Expect = e-144
 Identities = 304/576 (52%), Positives = 359/576 (62%), Gaps = 3/576 (0%)
 Frame = -1

Query: 1911 MACLLPQFKCPTDSTSVQFRIHSHTFFLKSRQPVCCRPQCSLPXXXXXXXXV--DMEKLR 1738
            M+CLLPQFKC  DS    F IHS+       +P C R QC+L            ++EKLR
Sbjct: 1    MSCLLPQFKCQPDS----FSIHSNG------EPFCFRAQCALSSASPSTSTAVLNLEKLR 50

Query: 1737 LPSFESHLSSVA-ERPLTYTGAIGPPLKGNLESTLAKEFIPSGKEXXXXXXXXXXXXXXX 1561
            LPS ESH  S+A  RP TY G IGPP +    ++LA E +    E               
Sbjct: 51   LPSLESHSDSIAANRPWTYIGGIGPPKEPLFGTSLATETLIINDEAVIAAAAAEAVALAR 110

Query: 1560 XXXXXXXXXALMFGNEASANSDYKAPDISSDTEFNKLKGAMLTDMELLGTGGLDPLGVEG 1381
                     A M  N  S N++ K P  S+   F+ +  ++LT  E     G+      G
Sbjct: 111  AAVKVAKDAAEMAKNYCSVNTETKIPIASTADSFSSM-WSLLTGKERADIIGVSFSAETG 169

Query: 1380 IQEEENLAQFSSEDFDNLNPTDXXXXXXXXXXXXSIAVRSGRQTEXXXXXXXXXXXXXXX 1201
            ++EE +  Q+ +E+ D   PT             SI VRS RQT+               
Sbjct: 170  LREECS-TQYPTEESDCFGPTHEELALLEKQLSESIVVRSKRQTQRKAKRARAAEKAAAN 228

Query: 1200 XXXXXXXXXXXXXRPAVQEVDYSDPLRYXXXXXXXXXXXXXXXXXXXXXGIQDXXXXXXX 1021
                         R  VQEVD SDPLR+                     GIQD       
Sbjct: 229  FVFMKSGSACKKKRVPVQEVDQSDPLRFFRGASTSSRLLSATEEVELSEGIQDLLKLERI 288

Query: 1020 XXXXXERCGSEPSFSQWAVAAGADQRTLRKRLNHGIQCKDKMIKSNIRLVISIAKNYQGA 841
                 ER G +P+F+QWA AA  DQ TLRKRLN+ I CKDKMIKSNIRLVISIAKNYQGA
Sbjct: 289  EEELKERFGGKPTFAQWAAAARVDQITLRKRLNYAILCKDKMIKSNIRLVISIAKNYQGA 348

Query: 840  GMNLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV 661
            GMNLQDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWI+QAVR+SLSDQSRTIRLPFHMV
Sbjct: 349  GMNLQDLVQEGCRGLVRGVEKFDASKGFKFSTYAHWWIRQAVRRSLSDQSRTIRLPFHMV 408

Query: 660  EATYRVREAKKQLYSENGRHPNDKEIAEATGLTMKRLSAVMLTPKAPRSLDQKIGFNLNM 481
            +ATYRV+EA+KQ YSENGRHP+DKE+AEATGL+MKRLSAV+LTPKAPRSLDQK+GFN+++
Sbjct: 409  DATYRVKEARKQFYSENGRHPDDKEVAEATGLSMKRLSAVLLTPKAPRSLDQKMGFNMDL 468

Query: 480  KPSEVIADPEAETGEEMLIKQFMKQDLEKVLNSLNPRENQVVRWRFGLEDGRMKTLQEIG 301
            K SEV ADPEAET E++L+K+FMK+DLE+VL SL+PRENQV+RWRFG+EDGRMKTLQEIG
Sbjct: 469  KLSEVTADPEAETAEDLLMKEFMKKDLERVLESLSPRENQVIRWRFGMEDGRMKTLQEIG 528

Query: 300  ELMGVSRERVRQIESCAFXXXXXXXXXXXXXQYVVS 193
            ELMGVSRER+RQIE  AF             QY+VS
Sbjct: 529  ELMGVSRERIRQIELSAFRKLKNKNRTKQLRQYLVS 564