BLASTX nr result
ID: Cimicifuga21_contig00002699
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00002699
(5268 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su... 2898 0.0
ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II su... 2819 0.0
ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 2819 0.0
ref|XP_002530639.1| DNA-directed RNA polymerase II largest subun... 2788 0.0
ref|XP_003537656.1| PREDICTED: DNA-directed RNA polymerase II su... 2781 0.0
>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
vinifera]
Length = 1848
Score = 2898 bits (7513), Expect = 0.0
Identities = 1437/1537 (93%), Positives = 1484/1537 (96%)
Frame = -2
Query: 5066 MDMRFPFSPAEVAKVRRVQFGILSPDEIRQMSVVQIEHSETTERGKPKPAGLSDPRLGTI 4887
MDMRFP+SPAEVAKVR VQFGILSPDEIRQMSVVQIEHSETTERGKPKP GLSDPRLGTI
Sbjct: 1 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 60
Query: 4886 DRKQKCETCTANMAECPGHFGHLELAKPMYHIGFMKTVLSIMRCVCFNCSKILADEEDSK 4707
DRK KCETCTANMAECPGHFGHLELAKPM+HIGFMKTVLSIMRCVCFNCSKILADEED K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120
Query: 4706 FKQAQRIRNPKHRLKKVLDACKNKTKCDGGDDIEAQGQDLEEPVKKSRGGCGAQQPKITI 4527
FKQAQ+IRNPK+RLKK+LDACKNK+KC+GGD+IE Q D +EPVKKSRGGCGAQQPK+TI
Sbjct: 121 FKQAQKIRNPKNRLKKILDACKNKSKCEGGDEIETQALDSDEPVKKSRGGCGAQQPKLTI 180
Query: 4526 DGMKMVAEYKAQRKKSDDQEQLPEPVERKQQLSAEKVLSVLKRITDEDCILLGLNPQYAR 4347
+GMKM+AEYK QRKK+DD EQLPEPVERKQQLSAE+VL+VLKRI+DEDCILLGLNP+YAR
Sbjct: 181 EGMKMIAEYKIQRKKNDDPEQLPEPVERKQQLSAERVLNVLKRISDEDCILLGLNPKYAR 240
Query: 4346 PDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 4167
PDWMILQVL PSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300
Query: 4166 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 3987
EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 3986 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 3807
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 3806 EDGQRLDLRYLKKSSDHHLELGYKVERHLIDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3627
EDGQRLDLRYLKKSSDHHLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 3626 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3447
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 3446 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 3267
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+PAPAILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 600
Query: 3266 LMRTSAWHAETETGFITPGDTQVRIERXXXXXXXXXXXXXXXXXGSLIHVIWEEVGPDAA 3087
L+RTSAWH+E+ETGFITPGDTQVRIE+ GSLIHVIWEEVGPDAA
Sbjct: 601 LLRTSAWHSESETGFITPGDTQVRIEKGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 3086 RKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQEKQL 2907
RKFLGHTQWLVNYWLLQ GFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQE+QL
Sbjct: 661 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQERQL 720
Query: 2906 EPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2727
E EPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2726 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2547
ACVGQQNVEGKRIPYGFIDRTLPHFTKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2546 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 2367
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE+QK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 900
Query: 2366 LDSLKMKKSEFDKVFRYEFGNENWNPSYMLTEHVEDLKTIPEFRSVFEAEVKKLEVDRYQ 2187
LDSLKMKK EFD+VF+YE +ENWNPSYML EHVEDLKTI EFR+VF+AEV+KLE DR+Q
Sbjct: 901 LDSLKMKKGEFDRVFKYEIDDENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQ 960
Query: 2186 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 2007
LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP
Sbjct: 961 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 1020
Query: 2006 GDDFLSVEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIETRFLQSLVAPG 1827
GDD +S+EAQKNATLFFNILLRSTFASKRVLKEYRLTREAF+WVIGEIE+RFLQSLVAPG
Sbjct: 1021 GDDLISMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 1826 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1647
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1140
Query: 1646 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVRSYYEMPDEEV 1467
P+V+KTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFV+SYYEMPDEEV
Sbjct: 1141 PDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 1200
Query: 1466 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1287
APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 1286 NDDAPKGEMQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKSGKVNKFDANEGFKP 1107
ND+APKGE+QDESAEDDVFLKKIE NMLTEMALRGIPDINKVFIKSGKVNKFD +EGFKP
Sbjct: 1261 NDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDESEGFKP 1320
Query: 1106 ENEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 927
E EWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 926 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 747
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDF 1440
Query: 746 LRGVTENIMLGQLAPIGTGDCALYLNDQMLQQAIELQLPSYMEGGGLDFGVTPSRSPITG 567
LRGVTENIMLGQLAPIGTGDCALYLNDQMLQ AIELQLPSYME GLDFG+TPSRSPITG
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCALYLNDQMLQHAIELQLPSYME--GLDFGMTPSRSPITG 1498
Query: 566 TPYHDGMMSPNYLLSPNVRASPITDAQFSPYVGGMAF 456
TPYHDGMMSPNYLLSPN+R SPITDAQFSPYVGGMAF
Sbjct: 1499 TPYHDGMMSPNYLLSPNLRLSPITDAQFSPYVGGMAF 1535
>ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis
sativus]
Length = 1853
Score = 2819 bits (7307), Expect = 0.0
Identities = 1396/1537 (90%), Positives = 1460/1537 (94%)
Frame = -2
Query: 5066 MDMRFPFSPAEVAKVRRVQFGILSPDEIRQMSVVQIEHSETTERGKPKPAGLSDPRLGTI 4887
MD+RFP+SPAEVAKVR VQFGILSPDEIRQMSVVQIEH ETTERGKPK AGLSDPRLGTI
Sbjct: 1 MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
Query: 4886 DRKQKCETCTANMAECPGHFGHLELAKPMYHIGFMKTVLSIMRCVCFNCSKILADEEDSK 4707
DRK KCETCTANMAECPGHFGHLELAKPM+HIGFMKTVL+IMR VCFNCSKIL DEED K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
Query: 4706 FKQAQRIRNPKHRLKKVLDACKNKTKCDGGDDIEAQGQDLEEPVKKSRGGCGAQQPKITI 4527
FKQA RI+NPK+RL+K+LDACKNKTKC+GGD+I+ QGQD ++PVKKSRGGCGAQQPKI+I
Sbjct: 121 FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180
Query: 4526 DGMKMVAEYKAQRKKSDDQEQLPEPVERKQQLSAEKVLSVLKRITDEDCILLGLNPQYAR 4347
+GMKM AEYKAQRKK+DD EQLPEPVERKQ L+AE+VL +LKRITDEDC LLGLNP+YAR
Sbjct: 181 EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240
Query: 4346 PDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 4167
PDWMILQVL PSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
Query: 4166 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 3987
EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 3986 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 3807
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 3806 EDGQRLDLRYLKKSSDHHLELGYKVERHLIDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3627
+DGQRLDLRYLKKSSDHHLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 3626 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3447
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 3446 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 3267
LLGCRKITKRDTFI KDVFMN LMWWEDFDGK+PAPAILKP+PLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600
Query: 3266 LMRTSAWHAETETGFITPGDTQVRIERXXXXXXXXXXXXXXXXXGSLIHVIWEEVGPDAA 3087
L RTSAWH+E+ETG ITPGDT VRIE+ GSLIHVIWEEVGPDAA
Sbjct: 601 LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660
Query: 3086 RKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQEKQL 2907
RKFLGHTQWLVNYWLLQ FSIGIGDTIADAATMEKINETIS AKNEVK LI+ AQE+ L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720
Query: 2906 EPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2727
EPEPGRTMM+SFEN+VNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2726 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2547
ACVGQQNVEGKRIP+GFIDRTLPHFTKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2546 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 2367
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
Query: 2366 LDSLKMKKSEFDKVFRYEFGNENWNPSYMLTEHVEDLKTIPEFRSVFEAEVKKLEVDRYQ 2187
LDSLKMKK EF+++FRYEF +ENW P+YML EHVEDLKTI EFR+VFEAEV+KLE DRYQ
Sbjct: 901 LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960
Query: 2186 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 2007
LGTEIATTG+NSWPMPVNLKRLI NAQKTFK+D RR SDMHPMEIVEA+DKLQERLKVVP
Sbjct: 961 LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
Query: 2006 GDDFLSVEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIETRFLQSLVAPG 1827
G+D LSVEAQKNATLFFNILLRSTFASKRVL EYRLTREAF+WVIGEIE+RFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 1826 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1647
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
Query: 1646 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVRSYYEMPDEEV 1467
PE NKTKERAK VQCALEYTTLRSVTQATEVWYDPDPMSTIIEED+DFV+SYYEMPDEE+
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200
Query: 1466 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1287
APEKISPWLLRIELNREMMVDKKLSMA+IAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 1286 NDDAPKGEMQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKSGKVNKFDANEGFKP 1107
ND+APKGE+ DESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK GKVNKFD NEGFKP
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320
Query: 1106 ENEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 927
E EWMLDTEGVNLLAVM HEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 926 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 747
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
Query: 746 LRGVTENIMLGQLAPIGTGDCALYLNDQMLQQAIELQLPSYMEGGGLDFGVTPSRSPITG 567
LRGVTENIMLGQLAPIGTG CALYLND+ML+ AIELQLPSY++ GLDFG+TPSRSPI+G
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYID--GLDFGMTPSRSPISG 1498
Query: 566 TPYHDGMMSPNYLLSPNVRASPITDAQFSPYVGGMAF 456
TPYH+GMMSPNYLLSPN+R SPI+DAQFSPYVGGMAF
Sbjct: 1499 TPYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535
>ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1-like [Cucumis sativus]
Length = 1832
Score = 2819 bits (7307), Expect = 0.0
Identities = 1396/1537 (90%), Positives = 1460/1537 (94%)
Frame = -2
Query: 5066 MDMRFPFSPAEVAKVRRVQFGILSPDEIRQMSVVQIEHSETTERGKPKPAGLSDPRLGTI 4887
MD+RFP+SPAEVAKVR VQFGILSPDEIRQMSVVQIEH ETTERGKPK AGLSDPRLGTI
Sbjct: 1 MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
Query: 4886 DRKQKCETCTANMAECPGHFGHLELAKPMYHIGFMKTVLSIMRCVCFNCSKILADEEDSK 4707
DRK KCETCTANMAECPGHFGHLELAKPM+HIGFMKTVL+IMR VCFNCSKIL DEED K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
Query: 4706 FKQAQRIRNPKHRLKKVLDACKNKTKCDGGDDIEAQGQDLEEPVKKSRGGCGAQQPKITI 4527
FKQA RI+NPK+RL+K+LDACKNKTKC+GGD+I+ QGQD ++PVKKSRGGCGAQQPKI+I
Sbjct: 121 FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180
Query: 4526 DGMKMVAEYKAQRKKSDDQEQLPEPVERKQQLSAEKVLSVLKRITDEDCILLGLNPQYAR 4347
+GMKM AEYKAQRKK+DD EQLPEPVERKQ L+AE+VL +LKRITDEDC LLGLNP+YAR
Sbjct: 181 EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240
Query: 4346 PDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 4167
PDWMILQVL PSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
Query: 4166 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 3987
EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 3986 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 3807
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 3806 EDGQRLDLRYLKKSSDHHLELGYKVERHLIDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3627
+DGQRLDLRYLKKSSDHHLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 3626 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3447
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 3446 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 3267
LLGCRKITKRDTFI KDVFMN LMWWEDFDGK+PAPAILKP+PLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600
Query: 3266 LMRTSAWHAETETGFITPGDTQVRIERXXXXXXXXXXXXXXXXXGSLIHVIWEEVGPDAA 3087
L RTSAWH+E+ETG ITPGDT VRIE+ GSLIHVIWEEVGPDAA
Sbjct: 601 LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660
Query: 3086 RKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQEKQL 2907
RKFLGHTQWLVNYWLLQ FSIGIGDTIADAATMEKINETIS AKNEVK LI+ AQE+ L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720
Query: 2906 EPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2727
EPEPGRTMM+SFEN+VNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2726 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2547
ACVGQQNVEGKRIP+GFIDRTLPHFTKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2546 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 2367
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
Query: 2366 LDSLKMKKSEFDKVFRYEFGNENWNPSYMLTEHVEDLKTIPEFRSVFEAEVKKLEVDRYQ 2187
LDSLKMKK EF+++FRYEF +ENW P+YML EHVEDLKTI EFR+VFEAEV+KLE DRYQ
Sbjct: 901 LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960
Query: 2186 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 2007
LGTEIATTG+NSWPMPVNLKRLI NAQKTFK+D RR SDMHPMEIVEA+DKLQERLKVVP
Sbjct: 961 LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
Query: 2006 GDDFLSVEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIETRFLQSLVAPG 1827
G+D LSVEAQKNATLFFNILLRSTFASKRVL EYRLTREAF+WVIGEIE+RFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 1826 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1647
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
Query: 1646 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVRSYYEMPDEEV 1467
PE NKTKERAK VQCALEYTTLRSVTQATEVWYDPDPMSTIIEED+DFV+SYYEMPDEE+
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200
Query: 1466 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1287
APEKISPWLLRIELNREMMVDKKLSMA+IAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 1286 NDDAPKGEMQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKSGKVNKFDANEGFKP 1107
ND+APKGE+ DESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK GKVNKFD NEGFKP
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320
Query: 1106 ENEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 927
E EWMLDTEGVNLLAVM HEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 926 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 747
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
Query: 746 LRGVTENIMLGQLAPIGTGDCALYLNDQMLQQAIELQLPSYMEGGGLDFGVTPSRSPITG 567
LRGVTENIMLGQLAPIGTG CALYLND+ML+ AIELQLPSY++ GLDFG+TPSRSPI+G
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYID--GLDFGMTPSRSPISG 1498
Query: 566 TPYHDGMMSPNYLLSPNVRASPITDAQFSPYVGGMAF 456
TPYH+GMMSPNYLLSPN+R SPI+DAQFSPYVGGMAF
Sbjct: 1499 TPYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535
>ref|XP_002530639.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
communis] gi|223529812|gb|EEF31747.1| DNA-directed RNA
polymerase II largest subunit, putative [Ricinus
communis]
Length = 1855
Score = 2788 bits (7228), Expect = 0.0
Identities = 1377/1537 (89%), Positives = 1451/1537 (94%)
Frame = -2
Query: 5066 MDMRFPFSPAEVAKVRRVQFGILSPDEIRQMSVVQIEHSETTERGKPKPAGLSDPRLGTI 4887
MDMRFP+SPAEVAKVR VQFGILSPDEIRQMSVVQIE SETTERGKPKP GLSD RLGTI
Sbjct: 1 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEFSETTERGKPKPGGLSDLRLGTI 60
Query: 4886 DRKQKCETCTANMAECPGHFGHLELAKPMYHIGFMKTVLSIMRCVCFNCSKILADEEDSK 4707
DRK KCETCTANMAECPGHFGHLELAKPM+HIGF+KTVLSIMRCVCFNCSKILADEED K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEEDHK 120
Query: 4706 FKQAQRIRNPKHRLKKVLDACKNKTKCDGGDDIEAQGQDLEEPVKKSRGGCGAQQPKITI 4527
FKQA +I+NPK+RLKK+LDACKNKTKC+GGDDI+ QD +EPVKKSRGGCGAQQP++TI
Sbjct: 121 FKQALKIKNPKNRLKKILDACKNKTKCEGGDDIDVHSQDTDEPVKKSRGGCGAQQPRMTI 180
Query: 4526 DGMKMVAEYKAQRKKSDDQEQLPEPVERKQQLSAEKVLSVLKRITDEDCILLGLNPQYAR 4347
+GMKM+AEYKAQRKK+DDQEQLPEPVERKQ L+AE+VL VLKRI+D+DC LLG NP+YAR
Sbjct: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDDDCRLLGFNPKYAR 240
Query: 4346 PDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 4167
PDWMILQVL PSVMMDTSSRSEDDLTHQLAMIIRHNENL++QE+ GAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKKQEKGGAPAHIIS 300
Query: 4166 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 3987
EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 3986 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 3807
TVITPDP INIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 3806 EDGQRLDLRYLKKSSDHHLELGYKVERHLIDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3627
+DGQRLDLRYLKKSSDHHLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 3626 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3447
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 3446 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 3267
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 600
Query: 3266 LMRTSAWHAETETGFITPGDTQVRIERXXXXXXXXXXXXXXXXXGSLIHVIWEEVGPDAA 3087
L+RT+AWH+++E G ITPGDT VRIE+ GSLIHVIWEEVGPDAA
Sbjct: 601 LIRTAAWHSDSERGVITPGDTLVRIEKGELLSGTVCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 3086 RKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQEKQL 2907
RKFLGHTQWLVNYWLLQ GFSIGIGDTIADAATMEKINETIS AKN VKELIR AQ K+L
Sbjct: 661 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISNAKNAVKELIRKAQNKEL 720
Query: 2906 EPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2727
EP+PGRTMMESFEN VNQVLN+ARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPKPGRTMMESFENEVNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2726 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2547
ACVGQQNVEGKRIPYGFIDRTLPHFTKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2546 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 2367
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
Query: 2366 LDSLKMKKSEFDKVFRYEFGNENWNPSYMLTEHVEDLKTIPEFRSVFEAEVKKLEVDRYQ 2187
LDSLKMKKSEFD+VF+YE +ENWNP+YM +H++DLK I E R VF+AEV+KLE DRYQ
Sbjct: 901 LDSLKMKKSEFDRVFKYELDDENWNPTYMYQDHIDDLKNIRELRDVFDAEVQKLEADRYQ 960
Query: 2186 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 2007
LGTEIATTGD+SWP+PVNL+RLIWNAQKTFKVD RRPSD+HPME VEAVDKLQERLKVVP
Sbjct: 961 LGTEIATTGDSSWPLPVNLRRLIWNAQKTFKVDKRRPSDIHPMEAVEAVDKLQERLKVVP 1020
Query: 2006 GDDFLSVEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIETRFLQSLVAPG 1827
GDD LSVEAQKNATLFF ILLRST ASKRVL++YRLTREAFDWVIGEIE+RFLQSLVAPG
Sbjct: 1021 GDDPLSVEAQKNATLFFGILLRSTLASKRVLEDYRLTREAFDWVIGEIESRFLQSLVAPG 1080
Query: 1826 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1647
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS++L
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSIFLI 1140
Query: 1646 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVRSYYEMPDEEV 1467
PE NKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFV+SYYEMPDEE+
Sbjct: 1141 PECNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEI 1200
Query: 1466 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1287
+PEKISPWLLRIELNREMMVDKKL+MADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 SPEKISPWLLRIELNREMMVDKKLNMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 1286 NDDAPKGEMQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKSGKVNKFDANEGFKP 1107
ND+APKGE+ DESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK KV+KFD NEGFK
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQSKVSKFDENEGFKT 1320
Query: 1106 ENEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 927
EWMLDTEGVNLLAVMC+E+VDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 IEEWMLDTEGVNLLAVMCNENVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 926 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 747
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAVYAE D+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAEADY 1440
Query: 746 LRGVTENIMLGQLAPIGTGDCALYLNDQMLQQAIELQLPSYMEGGGLDFGVTPSRSPITG 567
LRGVTENIMLGQLAPIGTGDCALYLND ML+ AIELQLPSYM+ GLDFG+TP+RSP++
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCALYLNDDMLKNAIELQLPSYMD--GLDFGMTPARSPVSV 1498
Query: 566 TPYHDGMMSPNYLLSPNVRASPITDAQFSPYVGGMAF 456
TPYHDGMMSP+YLLSP++R SP TDAQFSPYV GM F
Sbjct: 1499 TPYHDGMMSPSYLLSPSLRLSPTTDAQFSPYVSGMPF 1535
>ref|XP_003537656.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Glycine
max]
Length = 1827
Score = 2781 bits (7209), Expect = 0.0
Identities = 1378/1537 (89%), Positives = 1452/1537 (94%)
Frame = -2
Query: 5066 MDMRFPFSPAEVAKVRRVQFGILSPDEIRQMSVVQIEHSETTERGKPKPAGLSDPRLGTI 4887
MD+RFPFSPAEVAKVR VQFGILSPDEIRQMSVVQIEH ETTERGKPK GLSDPRLGTI
Sbjct: 1 MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60
Query: 4886 DRKQKCETCTANMAECPGHFGHLELAKPMYHIGFMKTVLSIMRCVCFNCSKILADEEDSK 4707
DRK KCETCTA+MAECPGHFGHLELAKPM+HIGF+KTVL+IMRCVCFNCSKILADE D K
Sbjct: 61 DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK 120
Query: 4706 FKQAQRIRNPKHRLKKVLDACKNKTKCDGGDDIEAQGQDLEEPVKKSRGGCGAQQPKITI 4527
FKQA RIRNPK+RLKK+LDACKNK+KC+GGD+I+ GQD +EPVKKSRGGCGAQQPKITI
Sbjct: 121 FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQDTDEPVKKSRGGCGAQQPKITI 180
Query: 4526 DGMKMVAEYKAQRKKSDDQEQLPEPVERKQQLSAEKVLSVLKRITDEDCILLGLNPQYAR 4347
+GMKM+AEYKAQRKKSDDQEQLPEPVERKQ LSAE+VL VLKRI+DEDC LLGLNP+YAR
Sbjct: 181 EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 4346 PDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 4167
PDWMILQVL PSVMMDTSSRSEDDLTHQLAMIIRHNENL+RQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS 300
Query: 4166 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 3987
EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 3986 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 3807
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 3806 EDGQRLDLRYLKKSSDHHLELGYKVERHLIDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3627
+DGQRLDLRYLKKSSDHHLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 3626 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3447
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 3446 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 3267
LLGCRKITKRDTFI KDVFMNILMWWEDFDGKVPAPAILKP PLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPEPLWTGKQVFNLIIPKQIN 600
Query: 3266 LMRTSAWHAETETGFITPGDTQVRIERXXXXXXXXXXXXXXXXXGSLIHVIWEEVGPDAA 3087
L+R S+WH+E+E G ITPGDT VRIE+ GSLIHVIWEEVGPDAA
Sbjct: 601 LIRYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 3086 RKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQEKQL 2907
RKFLGHTQWLVNYWLLQ FSIGIGDTIADA+TME IN+TIS AK +VK+LIR AQEK+L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIREAQEKKL 720
Query: 2906 EPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2727
E EPGRTMM+SFENRVNQ LN+ARDDAG+SAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2726 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2547
ACVGQQNVEGKRIPYGFIDRTLPHFTKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2546 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 2367
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE+QK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 900
Query: 2366 LDSLKMKKSEFDKVFRYEFGNENWNPSYMLTEHVEDLKTIPEFRSVFEAEVKKLEVDRYQ 2187
LDSLKMKK+EFD+VFRYEF +ENW P+YML E VEDLKTI EFR+VFEAEV+KLE DRYQ
Sbjct: 901 LDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLEADRYQ 960
Query: 2186 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 2007
L TEIATTGD+S P+PVNLKRLIWNAQKTFKVD RRPSDMHPMEIVEA+DKLQERLKVVP
Sbjct: 961 LATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVP 1020
Query: 2006 GDDFLSVEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIETRFLQSLVAPG 1827
G+D LS EAQKNATL FNILLRSTFASKRVL+EYRL+REAF+WV+GEIE+RFLQSLVA G
Sbjct: 1021 GEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVASG 1080
Query: 1826 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1647
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYL+
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLR 1140
Query: 1646 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVRSYYEMPDEEV 1467
+V KTKERAK+VQCALEYTTLRSVTQATEVWYDPDPMSTIIEED DFV+SYYEMPDEEV
Sbjct: 1141 SDVGKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDADFVKSYYEMPDEEV 1200
Query: 1466 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1287
A EKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 ALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 1286 NDDAPKGEMQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKSGKVNKFDANEGFKP 1107
ND+APKGE+QDESAEDDVFLKKIE NMLTEM LRGIPDINKVFIK+ KV KFD N+GFKP
Sbjct: 1261 NDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKVQKFDENQGFKP 1320
Query: 1106 ENEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 927
EWMLDTEGVNLLAVMCHEDVDA RTTSNHLIEVIEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1321 NEEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1380
Query: 926 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 747
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 1440
Query: 746 LRGVTENIMLGQLAPIGTGDCALYLNDQMLQQAIELQLPSYMEGGGLDFGVTPSRSPITG 567
LRGVTENIMLGQLAPIGTG+CALYLND+ML+ AIELQLPSYM+ GLDFG+TP+RSPI+G
Sbjct: 1441 LRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMD--GLDFGMTPARSPISG 1498
Query: 566 TPYHDGMMSPNYLLSPNVRASPITDAQFSPYVGGMAF 456
TPYH+G+MSP+YLLSPN+R SP +DAQFSPYVGGMAF
Sbjct: 1499 TPYHEGLMSPSYLLSPNLRLSPTSDAQFSPYVGGMAF 1535