BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00002559
         (3987 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278608.2| PREDICTED: probable ATP-dependent RNA helica...  1522   0.0  
emb|CBI22072.3| unnamed protein product [Vitis vinifera]             1508   0.0  
ref|XP_002307569.1| predicted protein [Populus trichocarpa] gi|2...  1437   0.0  
ref|XP_002520395.1| ATP-dependent RNA helicase, putative [Ricinu...  1399   0.0  
ref|XP_003567152.1| PREDICTED: probable ATP-dependent RNA helica...  1384   0.0  

>ref|XP_002278608.2| PREDICTED: probable ATP-dependent RNA helicase YTHDC2-like [Vitis
            vinifera]
          Length = 1231

 Score = 1522 bits (3940), Expect = 0.0
 Identities = 787/1237 (63%), Positives = 946/1237 (76%), Gaps = 25/1237 (2%)
 Frame = -2

Query: 3884 MARSEKKKQHGNRGENSRTPNIDEAARVRISQILEEFSQGGNEVYTFEAGLTNPERAVVH 3705
            M RS KK+Q      N   P + E  R+RIS+ L+EF +  NEVYTFEA LTN ERAVVH
Sbjct: 1    MTRSGKKRQKDGEQNN---PGVAEGTRIRISRALQEFRETHNEVYTFEANLTNHERAVVH 57

Query: 3704 QLXXXXXXXXXXXXXGNQRCVSVYXXXXXXXXXXXXKDGTCLTFSEETKEVLHDLFTRYP 3525
            ++             G+QR VSVY             +   L FSEE KEVL DLFTRYP
Sbjct: 58   EVCRKMGMTSKSSGRGSQRRVSVYKTKKKVDTKKEEGN-PYLNFSEEAKEVLLDLFTRYP 116

Query: 3524 PSDGERFEERIKNHVEEVDKIRRPKDDIFHKPSMNKAEITRKVETLASRMNKSPNLRQIV 3345
            P D E   + ++N   + +KI   KDDIF +PSMNKAEI +KVE LASR+ + P+LRQI 
Sbjct: 117  PDDKEMVTQMVENGSGKTEKIWGKKDDIFGRPSMNKAEIAKKVELLASRIEEDPHLRQIT 176

Query: 3344 EGRSKLPIASFKDAITSIIETNQVVLISGETGCGKTTQVPQYLLDYMWGKGEVCKIVCTQ 3165
            EGRSKLPIASFKD ITS IE++QVVLISGETGCGKTTQVPQ++LDYMWGKGE CKIVCTQ
Sbjct: 177  EGRSKLPIASFKDVITSTIESHQVVLISGETGCGKTTQVPQFVLDYMWGKGEACKIVCTQ 236

Query: 3164 PRRISAISVAERISYERGEKLGDNIGYKIRMESKGGKQSSIMFCTNGILLKVLVXXXXXX 2985
            PRRISA SVAERIS+E+GE +GD++GYKIR+ESKGG+ SSI+FCTNGILL+VLV      
Sbjct: 237  PRRISATSVAERISFEKGENVGDSVGYKIRLESKGGRHSSIIFCTNGILLRVLVSKGTDR 296

Query: 2984 XXXXXXXXXSKEEILEVTHIIVDEIHERDRFSDFILAILRDMLLSYPHLRLILMSATLDA 2805
                     +K +I ++THIIVDEIHERDR+SDF+LAILRDML SYPHLRLILMSAT+DA
Sbjct: 297  LKPEALRKAAKRDISDITHIIVDEIHERDRYSDFMLAILRDMLASYPHLRLILMSATIDA 356

Query: 2804 ERFSQYFGGCPIIRVPGFTYPVKSFYLEDILSILKSTESNHLDSTSPNDTVQD-KLTEDY 2628
            ERFSQYFGGCPIIRVPGFTYPVK+FYLED+LSILKST +N+LDST  +  V+D KL EDY
Sbjct: 357  ERFSQYFGGCPIIRVPGFTYPVKTFYLEDVLSILKSTGNNNLDSTLLSLPVEDPKLIEDY 416

Query: 2627 TNSLDEAIDLAWASDEFDPLLDFISSEGTPKIFNYQHSVTGASPLMVFAGKGRVSDVCRL 2448
              +LDEAI+LAW++DEFDPLLDF+SSEGTP++FNYQHS TG +PLMVFAGKGRV+DVC +
Sbjct: 417  GVALDEAINLAWSNDEFDPLLDFVSSEGTPQVFNYQHSSTGLTPLMVFAGKGRVADVCMM 476

Query: 2447 LSLGANCNLRANDGKTAMEWAQQENHEVVLEIIKNHLENVISKSGEDQELLQKYMATVNP 2268
            LS GA+C+L+AND  TA++ A++ENH    E+IK H+EN++S S E+Q+LL KY+AT NP
Sbjct: 477  LSFGADCHLKANDDTTALDLAERENHREAAEMIKQHMENLLSNSVEEQQLLDKYLATNNP 536

Query: 2267 EHIDIILIERLLRKICTDSEEGAILVFLPGWDDINKTRQKLLASPFFEDTSKFVLISLHS 2088
            E ID+ L+E+LLRKIC DS++GAILVFLPGWDDIN+TR+KLL++ FF+D+SKFV+ISLHS
Sbjct: 537  EIIDVALVEQLLRKICNDSKDGAILVFLPGWDDINRTREKLLSASFFKDSSKFVVISLHS 596

Query: 2087 MVPSVEQRKVFERPPRGSRKIIFSTNIAETAVTIDDVVYVIDSGRMKEKSYDPYNNVSTL 1908
            MVPSVEQ+KVF+RPP G RKI+ STNI+ETA+TIDDVVYVIDSGRMKEKSYDPYNNVSTL
Sbjct: 597  MVPSVEQKKVFKRPPPGCRKIVLSTNISETAITIDDVVYVIDSGRMKEKSYDPYNNVSTL 656

Query: 1907 HSSWVSKASAKQREGRAGRCQPGICYHLYSKIRATSLPDFQVPEIKRVPIEEICLQVKLL 1728
             S+W+SKASAKQREGRAGRC+PG+CYHLYSK+RA SLPDFQVPEIKR+PIEE+CLQVKLL
Sbjct: 657  QSAWISKASAKQREGRAGRCRPGVCYHLYSKLRAASLPDFQVPEIKRMPIEELCLQVKLL 716

Query: 1727 DPKCRIVDFLQKTLDPPVSETIRNAILLLQEIGALTLDEALTELGEKLGALPVHPSTSKM 1548
            DP C+I DFL+KTLDPPV ETIRNA+++LQ+IGAL++DE LTELG+KLG+LPVHP TSKM
Sbjct: 717  DPNCKIEDFLRKTLDPPVFETIRNAVIVLQDIGALSVDEKLTELGKKLGSLPVHPLTSKM 776

Query: 1547 LFFAILMNCLDPALTLACASDYKDPFILPLDPNXXXXXXXXXXXXXXLYGGHSDQLMVLA 1368
            LFFAIL+NCLDPALTLACASDY+DPF LP+ P+              LYGGHSDQL V+A
Sbjct: 777  LFFAILLNCLDPALTLACASDYRDPFTLPMLPHEKKRATAAKAELASLYGGHSDQLAVIA 836

Query: 1367 AYECWRRAKDKGQEALFCSKYFVSPSTMKMLSSMRTQLQKELIRNGFMQEDASHISLNAR 1188
            A+ECW+ AK+KGQEA FCS+YFVS  TM ML+ MR QLQ ELIRNGF+ ED S  SLNAR
Sbjct: 837  AFECWKSAKEKGQEAQFCSQYFVSSGTMHMLAGMRKQLQTELIRNGFIPEDVSSCSLNAR 896

Query: 1187 DPGILHAVLVAGSYPMVGRLVPPQNSRQKCVVETSSGPKVRLHPHSSNANLTVDISNSHT 1008
            DPGI+HAVLVAG YPMVGRL+PP  S ++ VVET+SG KVRLHPHS+N  L+   S+   
Sbjct: 897  DPGIIHAVLVAGLYPMVGRLLPPHKSGKRSVVETASGAKVRLHPHSNNFKLSFKKSDGRP 956

Query: 1007 LVIYDEITRGDGGMFIRNCSVVGPYPLLVLASELVVAPAXXXXXXXXXDCYASGSDE--- 837
            L+IYDEITRGDGGM IRNC+V+GP PLL+LA+E+VVAP              S  D+   
Sbjct: 957  LIIYDEITRGDGGMHIRNCTVIGPLPLLLLATEIVVAPGKGNDDDDEDCDDDSDGDDIDE 1016

Query: 836  -----DGMEMHTVSSEKREHRIMSNPDNIVSVVIDRWLTFESTALDVAQIYCLRERLDAA 672
                 DG E +   + ++  +IMS+PDN V+VV+DRW +FESTALDVAQIYCLRERL AA
Sbjct: 1017 DDSEGDGKEANNKLNGQQGEKIMSSPDNTVAVVVDRWHSFESTALDVAQIYCLRERLTAA 1076

Query: 671  ILFKVKYPWKVLPPALGASVHVLACILSYDGLSGISPSFTSIGSKTLLLNAAG-NKSTPG 495
            I FK  +  +VLPP LGASV+ +ACILSYDGLSGIS S  S+ S T ++NA   + S  G
Sbjct: 1077 IFFKATHAREVLPPMLGASVYAIACILSYDGLSGISLSLESVDSLTSMVNATEIDNSASG 1136

Query: 494  KEKETASSNNKNSFLRSLMNDNARHT--------------NSPQKPMLRSPVYAHPPNMQ 357
            + +      N N+FL++LM+   RH               NSP      SP    PP++ 
Sbjct: 1137 RRR---MGQNPNNFLKTLMSHGTRHKSPSKHHKNKGAENWNSPPTYNAWSPYM--PPSLT 1191

Query: 356  VGHPSQTTQVQGPGFGVDGSGRY-PRRDSFKRRRGTG 249
                  + +    G+G    G Y PR DSFKR+RG G
Sbjct: 1192 SNQRPSSQRPSFSGYGSSMHGPYGPRGDSFKRQRGNG 1228


>emb|CBI22072.3| unnamed protein product [Vitis vinifera]
          Length = 1190

 Score = 1508 bits (3905), Expect = 0.0
 Identities = 783/1229 (63%), Positives = 941/1229 (76%), Gaps = 17/1229 (1%)
 Frame = -2

Query: 3884 MARSEKKKQHGNRGENSRTPNIDEAARVRISQILEEFSQGGNEVYTFEAGLTNPERAVVH 3705
            M RS KK+Q      N   P + E  R+RIS+ L+EF +  NEVYTFEA LTN ERAVVH
Sbjct: 1    MTRSGKKRQKDGEQNN---PGVAEGTRIRISRALQEFRETHNEVYTFEANLTNHERAVVH 57

Query: 3704 QLXXXXXXXXXXXXXGNQRCVSVYXXXXXXXXXXXXKDGTCLTFSEETKEVLHDLFTRYP 3525
            ++             G+QR VSVY             +   L FSEE KEVL DLFTRYP
Sbjct: 58   EVCRKMGMTSKSSGRGSQRRVSVYKTKKKVDTKKEEGN-PYLNFSEEAKEVLLDLFTRYP 116

Query: 3524 PSDGERFEERIKNHVEEVDKIRRPKDDIFHKPSMNKAEITRKVETLASRMNKSPNLRQIV 3345
            P D E   + ++N   + +KI   KDDIF +PSMNKAEI +KVE LASR+ + P+LRQI 
Sbjct: 117  PDDKEMVTQMVENGSGKTEKIWGKKDDIFGRPSMNKAEIAKKVELLASRIEEDPHLRQIT 176

Query: 3344 EGRSKLPIASFKDAITSIIETNQVVLISGETGCGKTTQVPQYLLDYMWGKGEVCKIVCTQ 3165
            EGRSKLPIASFKD ITS IE++QVVLISGETGCGKTTQVPQ++LDYMWGKGE CKIVCTQ
Sbjct: 177  EGRSKLPIASFKDVITSTIESHQVVLISGETGCGKTTQVPQFVLDYMWGKGEACKIVCTQ 236

Query: 3164 PRRISAISVAERISYERGEKLGDNIGYKIRMESKGGKQSSIMFCTNGILLKVLVXXXXXX 2985
            PRRISA SVAERIS+E+GE +GD++GYKIR+ESKGG+ SSI+FCTNGILL+VLV      
Sbjct: 237  PRRISATSVAERISFEKGENVGDSVGYKIRLESKGGRHSSIIFCTNGILLRVLVSKGTD- 295

Query: 2984 XXXXXXXXXSKEEILEVTHIIVDEIHERDRFSDFILAILRDMLLSYPHLRLILMSATLDA 2805
                        +I ++THIIVDEIHERDR+SDF+LAILRDML SYPHLRLILMSAT+DA
Sbjct: 296  -----------RDISDITHIIVDEIHERDRYSDFMLAILRDMLASYPHLRLILMSATIDA 344

Query: 2804 ERFSQYFGGCPIIRVPGFTYPVKSFYLEDILSILKSTESNHLDSTSPNDTVQD-KLTEDY 2628
            ERFSQYFGGCPIIRVPGFTYPVK+FYLED+LSILKST +N+LDST  +  V+D KL EDY
Sbjct: 345  ERFSQYFGGCPIIRVPGFTYPVKTFYLEDVLSILKSTGNNNLDSTLLSLPVEDPKLIEDY 404

Query: 2627 TNSLDEAIDLAWASDEFDPLLDFISSEGTPKIFNYQHSVTGASPLMVFAGKGRVSDVCRL 2448
              +LDEAI+LAW++DEFDPLLDF+SSEGTP++FNYQHS TG +PLMVFAGKGRV+DVC +
Sbjct: 405  GVALDEAINLAWSNDEFDPLLDFVSSEGTPQVFNYQHSSTGLTPLMVFAGKGRVADVCMM 464

Query: 2447 LSLGANCNLRANDGKTAMEWAQQENHEVVLEIIKNHLENVISKSGEDQELLQKYMATVNP 2268
            LS GA+C+L+AND  TA++ A++ENH    E+IK H+EN++S S E+Q+LL KY+AT NP
Sbjct: 465  LSFGADCHLKANDDTTALDLAERENHREAAEMIKQHMENLLSNSVEEQQLLDKYLATNNP 524

Query: 2267 EHIDIILIERLLRKICTDSEEGAILVFLPGWDDINKTRQKLLASPFFEDTSKFVLISLHS 2088
            E ID+ L+E+LLRKIC DS++GAILVFLPGWDDIN+TR+KLL++ FF+D+SKFV+ISLHS
Sbjct: 525  EIIDVALVEQLLRKICNDSKDGAILVFLPGWDDINRTREKLLSASFFKDSSKFVVISLHS 584

Query: 2087 MVPSVEQRKVFERPPRGSRKIIFSTNIAETAVTIDDVVYVIDSGRMKEKSYDPYNNVSTL 1908
            MVPSVEQ+KVF+RPP G RKI+ STNI+ETA+TIDDVVYVIDSGRMKEKSYDPYNNVSTL
Sbjct: 585  MVPSVEQKKVFKRPPPGCRKIVLSTNISETAITIDDVVYVIDSGRMKEKSYDPYNNVSTL 644

Query: 1907 HSSWVSKASAKQREGRAGRCQPGICYHLYSKIRATSLPDFQVPEIKRVPIEEICLQVKLL 1728
             S+W+SKASAKQREGRAGRC+PG+CYHLYSK+RA SLPDFQVPEIKR+PIEE+CLQVKLL
Sbjct: 645  QSAWISKASAKQREGRAGRCRPGVCYHLYSKLRAASLPDFQVPEIKRMPIEELCLQVKLL 704

Query: 1727 DPKCRIVDFLQKTLDPPVSETIRNAILLLQEIGALTLDEALTELGEKLGALPVHPSTSKM 1548
            DP C+I DFL+KTLDPPV ETIRNA+++LQ+IGAL++DE LTELG+KLG+LPVHP TSKM
Sbjct: 705  DPNCKIEDFLRKTLDPPVFETIRNAVIVLQDIGALSVDEKLTELGKKLGSLPVHPLTSKM 764

Query: 1547 LFFAILMNCLDPALTLACASDYKDPFILPLDPNXXXXXXXXXXXXXXLYGGHSDQLMVLA 1368
            LFFAIL+NCLDPALTLACASDY+DPF LP+ P+              LYGGHSDQL V+A
Sbjct: 765  LFFAILLNCLDPALTLACASDYRDPFTLPMLPHEKKRATAAKAELASLYGGHSDQLAVIA 824

Query: 1367 AYECWRRAKDKGQEALFCSKYFVSPSTMKMLSSMRTQLQKELIRNGFMQEDASHISLNAR 1188
            A+ECW+ AK+KGQEA FCS+YFVS  TM ML+ MR QLQ ELIRNGF+ ED S  SLNAR
Sbjct: 825  AFECWKSAKEKGQEAQFCSQYFVSSGTMHMLAGMRKQLQTELIRNGFIPEDVSSCSLNAR 884

Query: 1187 DPGILHAVLVAGSYPMVGRLVPPQNSRQKCVVETSSGPKVRLHPHSSNANLTVDISNSHT 1008
            DPGI+HAVLVAG YPMVGRL+PP  S ++ VVET+SG KVRLHPHS+N  L+   S+   
Sbjct: 885  DPGIIHAVLVAGLYPMVGRLLPPHKSGKRSVVETASGAKVRLHPHSNNFKLSFKKSDGRP 944

Query: 1007 LVIYDEITRGDGGMFIRNCSVVGPYPLLVLASELVVAPAXXXXXXXXXDCYASGSDEDGM 828
            L+IYDEITRGDGGM IRNC+V+GP PLL+LA+E+VVAP                    G 
Sbjct: 945  LIIYDEITRGDGGMHIRNCTVIGPLPLLLLATEIVVAP--------------------GK 984

Query: 827  EMHTVSSEKREHRIMSNPDNIVSVVIDRWLTFESTALDVAQIYCLRERLDAAILFKVKYP 648
              + ++ ++ E +IMS+PDN V+VV+DRW +FESTALDVAQIYCLRERL AAI FK  + 
Sbjct: 985  ANNKLNGQQGE-KIMSSPDNTVAVVVDRWHSFESTALDVAQIYCLRERLTAAIFFKATHA 1043

Query: 647  WKVLPPALGASVHVLACILSYDGLSGISPSFTSIGSKTLLLNAAG-NKSTPGKEKETASS 471
             +VLPP LGASV+ +ACILSYDGLSGIS S  S+ S T ++NA   + S  G+ +     
Sbjct: 1044 REVLPPMLGASVYAIACILSYDGLSGISLSLESVDSLTSMVNATEIDNSASGRRR---MG 1100

Query: 470  NNKNSFLRSLMNDNARHT--------------NSPQKPMLRSPVYAHPPNMQVGHPSQTT 333
             N N+FL++LM+   RH               NSP      SP    PP++       + 
Sbjct: 1101 QNPNNFLKTLMSHGTRHKSPSKHHKNKGAENWNSPPTYNAWSPYM--PPSLTSNQRPSSQ 1158

Query: 332  QVQGPGFGVDGSGRY-PRRDSFKRRRGTG 249
            +    G+G    G Y PR DSFKR+RG G
Sbjct: 1159 RPSFSGYGSSMHGPYGPRGDSFKRQRGNG 1187


>ref|XP_002307569.1| predicted protein [Populus trichocarpa] gi|222857018|gb|EEE94565.1|
            predicted protein [Populus trichocarpa]
          Length = 1195

 Score = 1437 bits (3720), Expect = 0.0
 Identities = 755/1211 (62%), Positives = 908/1211 (74%), Gaps = 8/1211 (0%)
 Frame = -2

Query: 3863 KQHGNRGENSRTPNIDEAARVRISQILEEFSQGGNEVYTFEAGLTNPERAVVHQLXXXXX 3684
            K++  +    + P + EA  +RIS+ILE F    ++VYTFEA L+N +RAVVH++     
Sbjct: 3    KKNQRKAAQQQNPRVAEATLIRISKILERFRAAPDQVYTFEANLSNYDRAVVHEVCKKMG 62

Query: 3683 XXXXXXXXGNQRCVSVYXXXXXXXXXXXXKDGTCLTFSEETKEVLHDLFTRYPPSDGERF 3504
                    G QR VSVY            ++ T LTFS E+K VL +LF+ YPP +G   
Sbjct: 63   MKSKSSGRGGQRRVSVYKNTKKLDDVKGKENLTHLTFSGESKMVLGELFSNYPPEEGGFG 122

Query: 3503 EERIKNHVEEVDKIRRPKDDIFHKPSMNKAEITRKVETLASRMNKSPNLRQIVEGRSKLP 3324
             E    H     K R  KDDIF KPS  KAEI +KVE+ ASR+ K   L+QIVEGRSKLP
Sbjct: 123  AELEGKHSGTAGKTREKKDDIFSKPSRKKAEIAKKVESFASRIEKDVKLKQIVEGRSKLP 182

Query: 3323 IASFKDAITSIIETNQVVLISGETGCGKTTQVPQYLLDYMWGKGEVCKIVCTQPRRISAI 3144
            IASF D ITS IE++QVVLISGETGCGKTTQVPQ+LLD+MWGKGE CKIVCTQPRRISAI
Sbjct: 183  IASFMDVITSTIESHQVVLISGETGCGKTTQVPQFLLDHMWGKGEACKIVCTQPRRISAI 242

Query: 3143 SVAERISYERGEKLGDNIGYKIRMESKGGKQSSIMFCTNGILLKVLVXXXXXXXXXXXXX 2964
            SV+ERISYERGE +GD++GYKIR+ESKGGK SSI+FCTNG+LL++LV             
Sbjct: 243  SVSERISYERGENVGDSVGYKIRLESKGGKHSSIVFCTNGVLLRILVSKGITGSQNEANT 302

Query: 2963 XXSKEEILEVTHIIVDEIHERDRFSDFILAILRDMLLSYPHLRLILMSATLDAERFSQYF 2784
               +           DEIHERDRFSDF+LAI+RD+L S+ HLRLILMSATLDAERFSQYF
Sbjct: 303  AAKEN----------DEIHERDRFSDFMLAIIRDILPSHSHLRLILMSATLDAERFSQYF 352

Query: 2783 GGCPIIRVPGFTYPVKSFYLEDILSILKSTESNHLDSTSPNDTVQD-KLTEDYTNSLDEA 2607
            GGCPIIRVPGFTYPVK+F+LED+LSIL S + NHLDS  PN   +  +LTE+   +LDEA
Sbjct: 353  GGCPIIRVPGFTYPVKAFHLEDVLSILNSRDDNHLDSAMPNVLDEGHELTEEDKAALDEA 412

Query: 2606 IDLAWASDEFDPLLDFISSEGTPKIFNYQHSVTGASPLMVFAGKGRVSDVCRLLSLGANC 2427
            I+LAW++DEFD LLD +SSEGTPK+++YQHSV+G +PLMVFAGKGRV DVC LLSLGANC
Sbjct: 413  INLAWSNDEFDSLLDLVSSEGTPKVYDYQHSVSGLTPLMVFAGKGRVGDVCMLLSLGANC 472

Query: 2426 NLRANDGKTAMEWAQQENHEVVLEIIKNHLENVISKSGEDQELLQKYMATVNPEHIDIIL 2247
            NL++  G TA++WA++EN E   E+I+ H +N ++ S E Q+LL KYMAT+NPE ID++L
Sbjct: 473  NLQSKCGLTALKWAERENQEEAAEVIRKHAQNALADSSEQQQLLDKYMATINPELIDVVL 532

Query: 2246 IERLLRKICTDSEEGAILVFLPGWDDINKTRQKLLASPFFEDTSKFVLISLHSMVPSVEQ 2067
            IE+L++KIC DS++GAILVFLPGWDDIN+TR++LLA+PFF+D SKF++ISLHSMVPSVEQ
Sbjct: 533  IEQLIKKICVDSKDGAILVFLPGWDDINRTRERLLANPFFKDGSKFIIISLHSMVPSVEQ 592

Query: 2066 RKVFERPPRGSRKIIFSTNIAETAVTIDDVVYVIDSGRMKEKSYDPYNNVSTLHSSWVSK 1887
            +KVF+RPP+G RKII STNI+E+A+TIDDVVYVIDSGRMKEKSYDPYNNVSTL SSWVSK
Sbjct: 593  KKVFKRPPQGCRKIILSTNISESAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSK 652

Query: 1886 ASAKQREGRAGRCQPGICYHLYSKIRATSLPDFQVPEIKRVPIEEICLQVKLLDPKCRIV 1707
            ASAKQREGRAGRCQPGICYHLYSK+R +SLPDFQVPEIKR+PIEE+CLQVKLLDP C+I 
Sbjct: 653  ASAKQREGRAGRCQPGICYHLYSKLRESSLPDFQVPEIKRMPIEELCLQVKLLDPHCKIE 712

Query: 1706 DFLQKTLDPPVSETIRNAILLLQEIGALTLDEALTELGEKLGALPVHPSTSKMLFFAILM 1527
             FLQKTLDPPV ETIRNA+ +L +IGAL++DE LTELGEK+G LPVHP TSKM+FFAILM
Sbjct: 713  AFLQKTLDPPVPETIRNAVAVLLDIGALSVDETLTELGEKIGCLPVHPLTSKMIFFAILM 772

Query: 1526 NCLDPALTLACASDYKDPFILPLDPNXXXXXXXXXXXXXXLYGGHSDQLMVLAAYECWRR 1347
            NCLDPALTLACASDY+DPF LP+ PN              LYGGHSDQL VLAA+ECW  
Sbjct: 773  NCLDPALTLACASDYRDPFTLPMLPNEKKRAAAAKFELASLYGGHSDQLAVLAAFECWNN 832

Query: 1346 AKDKGQEALFCSKYFVSPSTMKMLSSMRTQLQKELIRNGFMQEDASHISLNARDPGILHA 1167
            AK++GQEA FCS+YF+S STM ML +MR QLQ+ELIR GF+ E+ S  + NA  PGI+HA
Sbjct: 833  AKNRGQEASFCSQYFISSSTMNMLQAMRKQLQRELIRKGFIPENVSSCNTNAHVPGIVHA 892

Query: 1166 VLVAGSYPMVGRLVPPQNSRQKCVVETSSGPKVRLHPHSSNANLTVDISNSHTLVIYDEI 987
            VLVAG YPMVGR +PP+N ++  VVET+SG KVRLHP S N  L+   SN + LVIYDEI
Sbjct: 893  VLVAGLYPMVGRFLPPKNGKR--VVETTSGAKVRLHPQSLNFKLSFWKSNDYPLVIYDEI 950

Query: 986  TRGDGGMFIRNCSVVGPYPLLVLASELVVAPA------XXXXXXXXXDCYASGSDEDGME 825
            TRGDGGM IRNC+V+GP PLL+LA+E+VVAPA                   + SDEDGME
Sbjct: 951  TRGDGGMHIRNCTVIGPLPLLLLATEIVVAPAENDDEDDEEDDDDYDSADGAESDEDGME 1010

Query: 824  MHTVSSEKREHRIMSNPDNIVSVVIDRWLTFESTALDVAQIYCLRERLDAAILFKVKYPW 645
            +H     ++  RIMS+PDN V VV+DRWL F +TALDVAQIYCLRE+L AAILFKV +P 
Sbjct: 1011 IHGKLGTQQGERIMSSPDNSVMVVVDRWLYFGATALDVAQIYCLREQLSAAILFKVTHPH 1070

Query: 644  KVLPPALGASVHVLACILSYDGLSGISPSFTSIGSKTLLLNAAG-NKSTPGKEKETASSN 468
            K LPPAL A  +  ACILS DGLSGIS    S+ S T +++A   ++S  G+      S 
Sbjct: 1071 KELPPALAAYTYTTACILSNDGLSGISLPGESVESLTSMVHATEIDESCSGRR---GISQ 1127

Query: 467  NKNSFLRSLMNDNARHTNSPQKPMLRSPVYAHPPNMQVGHPSQTTQVQGPGFGVDGSGRY 288
            N NSFL SL N+  +   +P+    RSP     P +Q G  S    +QGP      SG  
Sbjct: 1128 NPNSFLSSLKNNTQQ--TAPRYHNARSP--NQRPTLQ-GSTSAGHSMQGP------SG-- 1174

Query: 287  PRRDSFKRRRG 255
            PR DS+KR+RG
Sbjct: 1175 PRGDSYKRQRG 1185


>ref|XP_002520395.1| ATP-dependent RNA helicase, putative [Ricinus communis]
            gi|223540442|gb|EEF42011.1| ATP-dependent RNA helicase,
            putative [Ricinus communis]
          Length = 1229

 Score = 1399 bits (3621), Expect = 0.0
 Identities = 733/1233 (59%), Positives = 902/1233 (73%), Gaps = 25/1233 (2%)
 Frame = -2

Query: 3878 RSEKKKQHGNRGENSRTPNIDEAARVRISQILEEFSQGGNEVYTFEAGLTNPERAVVHQL 3699
            + +KK + GN       PN+ EA R+RISQILE+F    ++V+TFEA L+N ERAVVH++
Sbjct: 4    KRQKKAEQGN-------PNVAEATRIRISQILEQFRAAKDQVFTFEANLSNRERAVVHEV 56

Query: 3698 XXXXXXXXXXXXXGNQRCVSVYXXXXXXXXXXXXKDGTCLTFSEETKEVLHDLFTRYPPS 3519
                         G+QR VS+Y            +  T LTFSEE+K VL +LF  YPP 
Sbjct: 57   CKKLGMKSKSTGRGHQRRVSIYKIIQKADTGNGKESLTNLTFSEESKLVLQELFAYYPPE 116

Query: 3518 DGERFEERIKNHVEEVDKIRRPKDDIFHKPSMNKAEITRKVETLASRMNKSPNLRQIVEG 3339
            DGE   + + N   +   I+  KD IF  PSM KA+IT+KVE+L SR+ K  NLRQIVE 
Sbjct: 117  DGELGAKIVGNCKAKDSIIQGKKDGIFSMPSMAKADITKKVESLNSRIEKDANLRQIVEQ 176

Query: 3338 RSKLPIASFKDAITSIIETNQVVLISGETGCGKTTQVPQYLLDYMWGKGEVCKIVCTQPR 3159
            RSKLPIASF+D ITS +E++Q+VLISGETGCGKTTQVPQYLL+Y WGK E CKI+CTQPR
Sbjct: 177  RSKLPIASFRDVITSTVESHQIVLISGETGCGKTTQVPQYLLEYKWGKCEACKIICTQPR 236

Query: 3158 RISAISVAERISYERGEKLGDNIGYKIRMESKGGKQSSIMFCTNGILLKVLVXXXXXXXX 2979
            RISAISVAERIS ERGE +GD+IGYKIR+ESKGGK SSI+ CTNG+LL++LV        
Sbjct: 237  RISAISVAERISSERGENVGDDIGYKIRLESKGGKNSSIVLCTNGVLLRLLVSRGTRRSK 296

Query: 2978 XXXXXXXSKEEILEVTHIIVDEIHERDRFSDFILAILRDMLLSYPHLRLILMSATLDAER 2799
                    K++I  +THIIVDEIHERDR+SDFILAI+RD+L SYPHLRLILMSATLD+ER
Sbjct: 297  KKSSKNA-KDDISNITHIIVDEIHERDRYSDFILAIIRDILPSYPHLRLILMSATLDSER 355

Query: 2798 FSQYFGGCPIIRVPGFTYPVKSFYLEDILSILKSTESNHLDSTSPNDTVQD-KLTEDYTN 2622
            FSQYFGGCPI+RVPGFTYPVK+FYLED+LSIL S ++NH+DS  P+  ++  +L E+   
Sbjct: 356  FSQYFGGCPIVRVPGFTYPVKNFYLEDVLSILNSADNNHIDSAMPSIPIKSHELREEDRA 415

Query: 2621 SLDEAIDLAWASDEFDPLLDFISSEGTPKIFNYQHSVTGASPLMVFAGKGRVSDVCRLLS 2442
            ++DEAI+LAW +DEFD LLD +SSEG P+++N+Q S TG SPLMVFAGKGRV DVC LLS
Sbjct: 416  AVDEAINLAWTNDEFDTLLDLVSSEGIPEVYNFQESSTGLSPLMVFAGKGRVDDVCMLLS 475

Query: 2441 LGANCNLRANDGKTAMEWAQQENHEVVLEIIKNHLENVISKSGEDQELLQKYMATVNPEH 2262
              A+C+L+  DG TA+EWA++EN     E++K H+E   +   E Q+LL  Y+  +NPE 
Sbjct: 476  FNADCHLQDKDGLTALEWAKRENQHETAEVLKRHVEVSPTDCREQQQLLDNYLGKINPEL 535

Query: 2261 IDIILIERLLRKICTDSEEGAILVFLPGWDDINKTRQKLLASPFFEDTSKFVLISLHSMV 2082
            +D+ LIERLLRKIC  S +GAILVFLPGWDDI +TR+ LLA+PFF+D+SKF++ISLHSMV
Sbjct: 536  VDVSLIERLLRKICISSRDGAILVFLPGWDDIRRTREGLLANPFFKDSSKFLIISLHSMV 595

Query: 2081 PSVEQRKVFERPPRGSRKIIFSTNIAETAVTIDDVVYVIDSGRMKEKSYDPYNNVSTLHS 1902
            PS+EQ+KVF+RPP+G RKII STNIAET++TIDDV+YVIDSGRMKEKSYDPYNNVSTL S
Sbjct: 596  PSMEQKKVFKRPPQGCRKIILSTNIAETSITIDDVIYVIDSGRMKEKSYDPYNNVSTLQS 655

Query: 1901 SWVSKASAKQREGRAGRCQPGICYHLYSKIRATSLPDFQVPEIKRVPIEEICLQVKLLDP 1722
            SWVSKAS+KQREGRAGRCQPG+CYHLYSK+RA S+PDFQVPEI+R+PIEE+CLQVKLLDP
Sbjct: 656  SWVSKASSKQREGRAGRCQPGMCYHLYSKLRAASMPDFQVPEIRRMPIEELCLQVKLLDP 715

Query: 1721 KCRIVDFLQKTLDPPVSETIRNAILLLQEIGALTLDEALTELGEKLGALPVHPSTSKMLF 1542
             C+I +FL K LDPPV ETIRNAIL+LQ+IGAL+ DE LTE+GEKLG LPVHP  SKMLF
Sbjct: 716  NCKIEEFLGKMLDPPVPETIRNAILVLQDIGALSPDEQLTEVGEKLGCLPVHPLISKMLF 775

Query: 1541 FAILMNCLDPALTLACASDYKDPFILPLDPNXXXXXXXXXXXXXXLYGGHSDQLMVLAAY 1362
            FAILMNCLDPALT+ACASDY+DPF LP+ PN              LYGG SDQL V+AAY
Sbjct: 776  FAILMNCLDPALTMACASDYRDPFTLPVLPNEKKRAAATKFELASLYGGRSDQLAVIAAY 835

Query: 1361 ECWRRAKDKGQEALFCSKYFVSPSTMKMLSSMRTQLQKELIRNGFMQEDASHISLNARDP 1182
            ECW+ AK++GQEA FCS+YF+S STM ML  MR QL  ELIRNGF+QEDAS  ++N+ DP
Sbjct: 836  ECWKNAKERGQEARFCSQYFISSSTMIMLHGMRKQLLSELIRNGFIQEDASCCNVNSHDP 895

Query: 1181 GILHAVLVAGSYPMVGRLVPPQNSRQKCVVETSSGPKVRLHPHSSNANLTVDISNSHTLV 1002
            GIL+AVLVAG YPMVGR++PP+N + + +VET++G KVRLHP S N  L  + ++  +L+
Sbjct: 896  GILYAVLVAGLYPMVGRVLPPRNGK-RFIVETATGAKVRLHPQSLNFKLLSNKTDDCSLI 954

Query: 1001 IYDEITRGDGGMFIRNCSVVGPYPLLVLASELVVAPA---------XXXXXXXXXDCYAS 849
            I+DEITRG+ GM IRNC++VGP  LL+LA+E+VV PA                       
Sbjct: 955  IFDEITRGEWGMNIRNCTIVGPLALLLLATEIVVTPAKDHDEEDNEGDDNNDGSDTAPED 1014

Query: 848  GSDEDGMEMHTVSSEKREHRIMSNPDNIVSVVIDRWLTFESTALDVAQIYCLRERLDAAI 669
              DED ME+        + +IMS+PDN V+VV+DRWL F STAL+VAQIYCLRERL AAI
Sbjct: 1015 EGDEDKMEIDDRLGGHNDEKIMSSPDNSVNVVVDRWLYFSSTALEVAQIYCLRERLSAAI 1074

Query: 668  LFKVKYPWKVLPPALGASVHVLACILSYDGLSGISPSFTSIGSKTLLLNAAGNKST-PGK 492
            LF+V +P + LPPAL AS+   AC+LSYDG SGIS    S+ S   +++A    ST PG+
Sbjct: 1075 LFRVMHPKQELPPALAASMRATACVLSYDGQSGISLPQESVDSLASMVDATEIDSTAPGR 1134

Query: 491  EKETASSNNKNSFLRSLMNDNARHTNSPQKPMLRSPVYAHPPNMQVGH------------ 348
             K  A  +N + FLRSLM++  + T        R P +    N+                
Sbjct: 1135 RK--AMGHNPSGFLRSLMSNRRQQTTPHHYRNARLPAFKGKSNINQPSTCKNTPPVSSLD 1192

Query: 347  --PSQTTQVQGPGFGVDGSGRYPRRDSFKRRRG 255
              P Q   +QG   G  GS   PR DS KR+RG
Sbjct: 1193 KIPDQRPPLQGHTSGKSGSS--PRGDSSKRQRG 1223


>ref|XP_003567152.1| PREDICTED: probable ATP-dependent RNA helicase YTHDC2 [Brachypodium
            distachyon]
          Length = 1272

 Score = 1384 bits (3582), Expect = 0.0
 Identities = 712/1214 (58%), Positives = 891/1214 (73%), Gaps = 15/1214 (1%)
 Frame = -2

Query: 3854 GNRGENSRTPNIDEAARVRISQILEEFSQGGNEVYTFEAGLTNPERAVVHQLXXXXXXXX 3675
            G +G +     + E   VR++ +LEEF     +V+TFEA ++  ERA +H++        
Sbjct: 82   GRKGNDGGLGGLSEETLVRVTTVLEEFRASDAQVHTFEANISKQERAAIHEICRKMGMIS 141

Query: 3674 XXXXXGNQRCVSVYXXXXXXXXXXXXKDGTCLTFSEETKEVLHDLFTRYPPSDGERFEER 3495
                   +RC+SVY                 L FSEE + VL DLFT YPP+D E   E 
Sbjct: 142  KSKGYAERRCLSVYKRKQTQGPDKEEGPSK-LGFSEEARNVLQDLFTHYPPTDAELNGEA 200

Query: 3494 IKNHVEEVDKIRRPKDDIFHKPSMNKAEITRKVETLASRMNKSPNLRQIVEGRSKLPIAS 3315
            +KN  ++  KI+   D  F +P M+K +I +KVE LAS++N+S  LR+IVE RSKLPI+S
Sbjct: 201  VKNSSDKAAKIQWKTDSAFCRPVMHKHDIAKKVEILASKINESRQLRKIVEDRSKLPISS 260

Query: 3314 FKDAITSIIETNQVVLISGETGCGKTTQVPQYLLDYMWGKGEVCKIVCTQPRRISAISVA 3135
            FKD I+S +E NQVVLISGETGCGKTTQVPQY+LD++WGKGE CKI+CTQPRRISAISVA
Sbjct: 261  FKDHISSTLENNQVVLISGETGCGKTTQVPQYILDHVWGKGESCKIICTQPRRISAISVA 320

Query: 3134 ERISYERGEKLGDNIGYKIRMESKGGKQSSIMFCTNGILLKVLVXXXXXXXXXXXXXXXS 2955
            ERIS ERGE +GD +GYKIR+ESKGGK SSIMFCTNG+LL++L+                
Sbjct: 321  ERISAERGEVVGDTVGYKIRLESKGGKNSSIMFCTNGVLLRLLIGRVTNMPKAKNPKRSF 380

Query: 2954 KEEILEVTHIIVDEIHERDRFSDFILAILRDMLLSYPHLRLILMSATLDAERFSQYFGGC 2775
             + ++ +THIIVDEIHERDRFSDF+LAILRD+L  YPHL L+LMSAT+DAERFSQYF GC
Sbjct: 381  DDAVMGITHIIVDEIHERDRFSDFMLAILRDLLPVYPHLHLVLMSATIDAERFSQYFNGC 440

Query: 2774 PIIRVPGFTYPVKSFYLEDILSILKSTESNHLDSTSPNDTVQDK-LTEDYTNSLDEAIDL 2598
            PII+VPG TYPVK FYLED+LSIL+S   NHL+  + +D  QD  LT+DY +S+DE+I +
Sbjct: 441  PIIQVPGHTYPVKIFYLEDVLSILQSVGDNHLNPAT-DDLEQDSILTDDYRSSMDESISM 499

Query: 2597 AWASDEFDPLLDFISSEGTPKIFNYQHSVTGASPLMVFAGKGRVSDVCRLLSLGANCNLR 2418
            A A+DEFDPL++ IS E +P+IFNY+HS +G +PLMVFAGKG++ DVC LLS G +C+ R
Sbjct: 500  ALANDEFDPLIELISVEQSPEIFNYRHSESGVTPLMVFAGKGQIGDVCMLLSFGVDCSAR 559

Query: 2417 ANDGKTAMEWAQQENHEVVLEIIKNHLENVISKSGEDQELLQKYMATVNPEHIDIILIER 2238
             +DGK+A++WAQQEN + V E+IK H++    KS ++ ELL +Y+ T+NPEHID +LIER
Sbjct: 560  DHDGKSALDWAQQENQQQVYEVIKKHMDCGSVKSPQENELLNRYLTTINPEHIDTVLIER 619

Query: 2237 LLRKICTDSEEGAILVFLPGWDDINKTRQKLLASPFFEDTSKFVLISLHSMVPSVEQRKV 2058
            LLRKIC DS EGA+LVFLPGW+DIN+TR++L ASP F+D+SKF+++SLHSM+PSVEQ+KV
Sbjct: 620  LLRKICIDSNEGAVLVFLPGWEDINQTRERLFASPLFQDSSKFLILSLHSMIPSVEQKKV 679

Query: 2057 FERPPRGSRKIIFSTNIAETAVTIDDVVYVIDSGRMKEKSYDPYNNVSTLHSSWVSKASA 1878
            F+ PP G RKII STNIAETAVTIDDVV+VIDSG+MKEKSYDPYNNVSTLH+SWVS+ASA
Sbjct: 680  FKSPPVGVRKIILSTNIAETAVTIDDVVFVIDSGKMKEKSYDPYNNVSTLHTSWVSRASA 739

Query: 1877 KQREGRAGRCQPGICYHLYSKIRATSLPDFQVPEIKRVPIEEICLQVKLLDPKCRIVDFL 1698
            +QREGRAGRCQPG CYHLYS  RA SLP++Q+PEIKR+PIEE+CLQVKLLDP CRI DFL
Sbjct: 740  RQREGRAGRCQPGTCYHLYSGFRAASLPEYQIPEIKRMPIEELCLQVKLLDPNCRIADFL 799

Query: 1697 QKTLDPPVSETIRNAILLLQEIGALTLDEALTELGEKLGALPVHPSTSKMLFFAILMNCL 1518
            +KTLDPP+ ET++NAI +LQ++GALT DE LT+LGEKLG+LPVHPSTSKML F ILMNCL
Sbjct: 800  KKTLDPPIPETVKNAITVLQDLGALTQDEQLTDLGEKLGSLPVHPSTSKMLLFGILMNCL 859

Query: 1517 DPALTLACASDYKDPFILPLDPNXXXXXXXXXXXXXXLYGGHSDQLMVLAAYECWRRAKD 1338
            DPALTLACA+DY+DPF+LP+ P+              LYGG SDQL V+AA++CW  AKD
Sbjct: 860  DPALTLACAADYRDPFVLPMAPDERKKAAAAKVELASLYGGFSDQLAVVAAFDCWICAKD 919

Query: 1337 KGQEALFCSKYFVSPSTMKMLSSMRTQLQKELIRNGFMQEDASHISLNARDPGILHAVLV 1158
            +GQEALFCSKYFV+ +TM MLS+MR QL  EL + GF+  DAS  SLNA+ PGI+ AVLV
Sbjct: 920  RGQEALFCSKYFVAANTMNMLSNMRKQLHSELSQRGFLPADASACSLNAKVPGIISAVLV 979

Query: 1157 AGSYPMVGRLVPPQNSRQKCVVETSSGPKVRLHPHSSNANLTVDISNSHTLVIYDEITRG 978
            AG+YPMVGRL+PP+ + ++ VVET+SG KVRLHPHS N NL+ + S  + L+IYDEITRG
Sbjct: 980  AGAYPMVGRLLPPRRNCKRAVVETASGAKVRLHPHSCNFNLSFNKSYGNPLMIYDEITRG 1039

Query: 977  DGGMFIRNCSVVGPYPLLVLASELVVAPAXXXXXXXXXDCYASGSDEDGMEMHTVSSEKR 798
            DGGM+I+NCSVVG YPL++LA+E+ VAP               GS ED  E +T   +  
Sbjct: 1040 DGGMYIKNCSVVGSYPLVLLATEMAVAPPDDSDE-------EEGSSEDEAEKNTSGQQNE 1092

Query: 797  EHRIMSNPDNIVSVVIDRWLTFESTALDVAQIYCLRERLDAAILFKVKYPWKVLPPALGA 618
            E  IMS PDN VSV+IDRWL F++TALD+AQIYCLRERL +AILFKVK+P  VLPPALGA
Sbjct: 1093 E--IMSLPDNTVSVIIDRWLRFDATALDIAQIYCLRERLASAILFKVKHPQDVLPPALGA 1150

Query: 617  SVHVLACILSYDGLSGISPSFTSIGSKTLLLNAAGNKSTPGKEKET----ASSNNKNSFL 450
            +++ +ACILSYDGL G+      + S  L  N   N+S+    + T    AS      FL
Sbjct: 1151 TMYAVACILSYDGLPGM------VESADLSTNRGSNQSSTEASRFTQGRRASYIPPGGFL 1204

Query: 449  RSLMNDNARHTNSPQKPMLRSPVYAHPPNMQVGHPSQTTQVQGPGFGVDGSGRYPRR--- 279
             SL++D       P  P  R    +H P    GH   +    G     + S ++PRR   
Sbjct: 1205 MSLLSD-----IPPNAPQFRKS--SHHPGGASGHIRPSRPSAG---RFNQSKQHPRRSSS 1254

Query: 278  -------DSFKRRR 258
                   +SFKR+R
Sbjct: 1255 GQGSSAPESFKRQR 1268