BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00001587
         (944 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002516772.1| Photosystem I reaction center subunit II, ch...   350   2e-94
dbj|BAF80479.1| PSI reaction center subunit II [Citrus sinensis]      345   1e-92
dbj|BAF80471.1| PSI reaction center subunit II [Citrus sinensis]...   342   8e-92
ref|XP_002281825.1| PREDICTED: photosystem I reaction center sub...   338   8e-91
ref|XP_002520727.1| Photosystem I reaction center subunit II, ch...   332   1e-88

>ref|XP_002516772.1| Photosystem I reaction center subunit II, chloroplast precursor,
           putative [Ricinus communis] gi|223543860|gb|EEF45386.1|
           Photosystem I reaction center subunit II, chloroplast
           precursor, putative [Ricinus communis]
          Length = 208

 Score =  350 bits (899), Expect = 2e-94
 Identities = 179/215 (83%), Positives = 192/215 (89%), Gaps = 3/215 (1%)
 Frame = -3

Query: 843 MAMAAQSALFT-STISTPTSGNRTLVPWKQSSSLSF-TARPN-FTFAQRTIKAEAAEGKS 673
           MAMA Q++LFT +T+STP S N  +VPWKQSS LS  TA+P  ++ AQ+TIKA AAEGK 
Sbjct: 1   MAMATQASLFTPTTLSTPKSSNHAIVPWKQSSFLSIPTAKPRKYSIAQKTIKAAAAEGK- 59

Query: 672 TTEEPPTKEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQVFEMP 493
                 TKEAPVGFTPP+LDP+TPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQ+FEMP
Sbjct: 60  ------TKEAPVGFTPPELDPSTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQIFEMP 113

Query: 492 TGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPSGEVQYLHPKDGVYPE 313
           TGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFP+GEVQYLHPKDGVYPE
Sbjct: 114 TGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPE 173

Query: 312 KVNPGREGVGLNARSIGKNVSPIEVKFTGKQSYDL 208
           KVNPGREGVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 174 KVNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208


>dbj|BAF80479.1| PSI reaction center subunit II [Citrus sinensis]
          Length = 209

 Score =  345 bits (884), Expect = 1e-92
 Identities = 172/212 (81%), Positives = 186/212 (87%), Gaps = 2/212 (0%)
 Frame = -3

Query: 837 MAAQSALFTSTISTPTSGNRTLVPWKQSSSLSFTARPNFTFA--QRTIKAEAAEGKSTTE 664
           MA Q+ LFT +I+T  +    L PWK +SS SFT+    TF+  QRT++A  AEGK+   
Sbjct: 1   MATQAGLFTPSITTTKTSKLPLNPWKPTSSFSFTSPKPLTFSMGQRTVRAAGAEGKT--- 57

Query: 663 EPPTKEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQVFEMPTGG 484
           E PTKEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITW+SPKEQ+FEMPTGG
Sbjct: 58  EAPTKEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGG 117

Query: 483 AAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPSGEVQYLHPKDGVYPEKVN 304
           AAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFP+GEVQYLHPKDGVYPEKVN
Sbjct: 118 AAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVN 177

Query: 303 PGREGVGLNARSIGKNVSPIEVKFTGKQSYDL 208
           PGR+GVGLN RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 178 PGRQGVGLNYRSIGKNVSPIEVKFTGKQVYDL 209


>dbj|BAF80471.1| PSI reaction center subunit II [Citrus sinensis]
           gi|157678950|dbj|BAF80473.1| PSI reaction center subunit
           II [Citrus sinensis]
          Length = 209

 Score =  342 bits (877), Expect = 8e-92
 Identities = 172/212 (81%), Positives = 185/212 (87%), Gaps = 2/212 (0%)
 Frame = -3

Query: 837 MAAQSALFTSTISTPTSGNRTLVPWKQSSSLSFTARPNFTF--AQRTIKAEAAEGKSTTE 664
           MA Q+ LFT +I T  +    L PWK +SS SFT+    TF  AQRT++A AAE K+   
Sbjct: 1   MATQAGLFTPSIITTKTSKLLLNPWKPTSSFSFTSPKPLTFSMAQRTVRAAAAEEKT--- 57

Query: 663 EPPTKEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQVFEMPTGG 484
           E PTKEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITW+SPKEQ+FEMPTGG
Sbjct: 58  EAPTKEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGG 117

Query: 483 AAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPSGEVQYLHPKDGVYPEKVN 304
           AAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFP+GEVQYLHPKDGVYPEKVN
Sbjct: 118 AAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVN 177

Query: 303 PGREGVGLNARSIGKNVSPIEVKFTGKQSYDL 208
           PGR+GVG+N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 178 PGRQGVGVNYRSIGKNVSPIEVKFTGKQVYDL 209


>ref|XP_002281825.1| PREDICTED: photosystem I reaction center subunit II, chloroplastic
           isoform 1 [Vitis vinifera]
           gi|359477510|ref|XP_003631987.1| PREDICTED: photosystem
           I reaction center subunit II, chloroplastic isoform 2
           [Vitis vinifera] gi|359477512|ref|XP_003631988.1|
           PREDICTED: photosystem I reaction center subunit II,
           chloroplastic isoform 3 [Vitis vinifera]
           gi|359477514|ref|XP_003631989.1| PREDICTED: photosystem
           I reaction center subunit II, chloroplastic isoform 4
           [Vitis vinifera] gi|147800882|emb|CAN62373.1|
           hypothetical protein VITISV_036477 [Vitis vinifera]
          Length = 204

 Score =  338 bits (868), Expect = 8e-91
 Identities = 174/215 (80%), Positives = 187/215 (86%), Gaps = 3/215 (1%)
 Frame = -3

Query: 843 MAMAAQSALFTSTISTPTSGNRTLVPWKQSSSLSFTAR--PNFTFAQRT-IKAEAAEGKS 673
           MAMA Q++LFT T+S    G+R  VPWK SSSLSFT    P  + A RT I+A A     
Sbjct: 1   MAMATQASLFTPTLS----GDRVTVPWKSSSSLSFTTPKLPKSSVAPRTTIRAMA----- 51

Query: 672 TTEEPPTKEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQVFEMP 493
             EE PTKEAPVGFTPP+LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQ+FEMP
Sbjct: 52  --EEAPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQIFEMP 109

Query: 492 TGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPSGEVQYLHPKDGVYPE 313
           TGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFP+GEVQYLHPKDGVYPE
Sbjct: 110 TGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPE 169

Query: 312 KVNPGREGVGLNARSIGKNVSPIEVKFTGKQSYDL 208
           KVNPGR+GVG+N RSIGKNV+PIEVKFTGKQ+YDL
Sbjct: 170 KVNPGRQGVGVNFRSIGKNVNPIEVKFTGKQAYDL 204


>ref|XP_002520727.1| Photosystem I reaction center subunit II, chloroplast precursor,
           putative [Ricinus communis] gi|223540112|gb|EEF41689.1|
           Photosystem I reaction center subunit II, chloroplast
           precursor, putative [Ricinus communis]
          Length = 209

 Score =  332 bits (850), Expect = 1e-88
 Identities = 168/213 (78%), Positives = 181/213 (84%), Gaps = 3/213 (1%)
 Frame = -3

Query: 837 MAAQSALFTSTISTPTSGNRTLVPWKQSSSLSFTARPN---FTFAQRTIKAEAAEGKSTT 667
           MA QS LFT T  T    N  L+PWK +SS SFT+      F+  QR++K  AA  + T 
Sbjct: 1   MATQSGLFTPTTITAPKPN--LIPWKPTSSFSFTSTTKPLTFSTTQRSLKVAAAAEEKT- 57

Query: 666 EEPPTKEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQVFEMPTG 487
            E PTKEAPVGFTPP+LDP+TPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQ+FEMPTG
Sbjct: 58  -ETPTKEAPVGFTPPELDPSTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTG 116

Query: 486 GAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPSGEVQYLHPKDGVYPEKV 307
           GAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFP+GEVQYLHPKDGVYPEKV
Sbjct: 117 GAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKV 176

Query: 306 NPGREGVGLNARSIGKNVSPIEVKFTGKQSYDL 208
           NPGR+GVG N RSIGKNVSPIEVKFTGKQ YD+
Sbjct: 177 NPGRQGVGQNFRSIGKNVSPIEVKFTGKQVYDI 209