BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00001582
         (1249 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_563657.1| ATP-dependent Clp protease, protease subunit [A...   421   e-115
ref|XP_002889406.1| hypothetical protein ARALYDRAFT_887394 [Arab...   421   e-115
ref|XP_002277104.1| PREDICTED: ATP-dependent Clp protease proteo...   418   e-114
gb|ABA41488.1| ATP-dependent Clp protease proteolytic subunit [C...   416   e-114
ref|XP_002515273.1| ATP-dependent Clp protease proteolytic subun...   412   e-113

>ref|NP_563657.1| ATP-dependent Clp protease, protease subunit [Arabidopsis thaliana]
            gi|75313059|sp|Q9S834.1|CLPP5_ARATH RecName:
            Full=ATP-dependent Clp protease proteolytic subunit 5,
            chloroplastic; AltName: Full=Endopeptidase ClpP5;
            Short=nClpP5; AltName: Full=nClpP1; Flags: Precursor
            gi|9972387|gb|AAG10637.1|AC022521_15 ATP-dependent Clp
            protease subunit ClpP [Arabidopsis thaliana]
            gi|4887543|emb|CAB43488.1| ATP-dependent Clp protease
            subunit ClpP [Arabidopsis thaliana]
            gi|5360579|dbj|BAA82065.1| nClpP1 [Arabidopsis thaliana]
            gi|21536639|gb|AAM60971.1| ATP-dependent Clp protease
            proteolytic subunit ClpP5 [Arabidopsis thaliana]
            gi|89274139|gb|ABD65590.1| At1g02560 [Arabidopsis
            thaliana] gi|332189323|gb|AEE27444.1| ATP-dependent Clp
            protease, protease subunit [Arabidopsis thaliana]
          Length = 298

 Score =  421 bits (1081), Expect = e-115
 Identities = 225/290 (77%), Positives = 242/290 (83%), Gaps = 7/290 (2%)
 Frame = -3

Query: 1154 MGHSCVSTSVRCNSHI--FSSPTPNSLSADSHHPHQLALPFQPLRSER-NLRRSVSRPWR 984
            M H+CVSTS         F S +PN  S DS    +L+LPF+PLRS + N   S  + W+
Sbjct: 1    MAHACVSTSASSLRFTAGFVSASPNGSSFDSP---KLSLPFEPLRSRKTNKLVSDRKNWK 57

Query: 983  KA--KAVYYSDGFSSYPNRNSEQGIWSIRDDLQVPHSAYLSQ--GGQGPPPMVQERFQSV 816
             +  KAVY  + ++  P   S QG+WSIRDDLQVP S Y      GQGPPPMVQERFQS+
Sbjct: 58   NSTPKAVYSGNLWT--PEIPSPQGVWSIRDDLQVPSSPYFPAYAQGQGPPPMVQERFQSI 115

Query: 815  ISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPNKDIVMYVNSPGGSVTAGMAIFDT 636
            ISQLFQ+RIIRCGGAVDDDMANIIVAQLLYLDA+DP KDIVMYVNSPGGSVTAGMAIFDT
Sbjct: 116  ISQLFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPTKDIVMYVNSPGGSVTAGMAIFDT 175

Query: 635  MRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQA 456
            MRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQA
Sbjct: 176  MRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQA 235

Query: 455  NEMLHHKANLNGYLSYHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVI 306
            NEMLHHKANLNGYL+YHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVI
Sbjct: 236  NEMLHHKANLNGYLAYHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVI 285


>ref|XP_002889406.1| hypothetical protein ARALYDRAFT_887394 [Arabidopsis lyrata subsp.
            lyrata] gi|297335248|gb|EFH65665.1| hypothetical protein
            ARALYDRAFT_887394 [Arabidopsis lyrata subsp. lyrata]
          Length = 298

 Score =  421 bits (1081), Expect = e-115
 Identities = 226/291 (77%), Positives = 244/291 (83%), Gaps = 8/291 (2%)
 Frame = -3

Query: 1154 MGHSCVSTSVRCNSHI--FSSPTPNSLSADSHHPHQLALPFQPLRSERNLRRSVS--RPW 987
            M H+CVSTS         F S +PN  S DS    +L+LPF+PLRS R  ++ VS  + W
Sbjct: 1    MAHACVSTSASSLRFTAGFVSASPNGSSFDSP---KLSLPFEPLRS-RKTKKLVSDRKNW 56

Query: 986  RKA--KAVYYSDGFSSYPNRNSEQGIWSIRDDLQVPHSAYLS--QGGQGPPPMVQERFQS 819
            + +  KAVY  + ++  P   S QG+WSIRDDLQVP S Y      GQGPPPMVQERFQS
Sbjct: 57   KNSTPKAVYSGNLWT--PEIPSPQGVWSIRDDLQVPSSPYFPVYAQGQGPPPMVQERFQS 114

Query: 818  VISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPNKDIVMYVNSPGGSVTAGMAIFD 639
            +ISQLFQ+RIIRCGGAVDDDMANIIVAQLLYLDA+DP KDIVMYVNSPGGSVTAGMAIFD
Sbjct: 115  IISQLFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPTKDIVMYVNSPGGSVTAGMAIFD 174

Query: 638  TMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQ 459
            TMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQ
Sbjct: 175  TMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQ 234

Query: 458  ANEMLHHKANLNGYLSYHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVI 306
            ANEMLHHKANLNGYL+YHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVI
Sbjct: 235  ANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVI 285


>ref|XP_002277104.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 5,
            chloroplastic isoform 1 [Vitis vinifera]
            gi|297743987|emb|CBI36957.3| unnamed protein product
            [Vitis vinifera]
          Length = 289

 Score =  418 bits (1074), Expect = e-114
 Identities = 225/287 (78%), Positives = 241/287 (83%), Gaps = 4/287 (1%)
 Frame = -3

Query: 1154 MGHSCVSTSVRCNSHIFSSPTPNSLSADSHHPHQLALPFQPL-RSERNLRRSVSRPWRKA 978
            M H+CV+     NS IFSS  P S S+DSH     +  F  L  SE+ LR +        
Sbjct: 1    MAHTCVAF----NSLIFSS-NPTS-SSDSHKLSFSSRKFTKLVGSEKRLRVA------PV 48

Query: 977  KAVYYSDGFSSYPNRNSEQGIWSIRDDLQVPHSAYL---SQGGQGPPPMVQERFQSVISQ 807
            KA Y  + ++  P++NS QG WSIRDDLQ+P SAY    +QGGQGPPPMVQERFQSV+SQ
Sbjct: 49   KAAYSGEFWA--PDKNSRQGTWSIRDDLQIPSSAYFPTYAQGGQGPPPMVQERFQSVVSQ 106

Query: 806  LFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPNKDIVMYVNSPGGSVTAGMAIFDTMRH 627
            LFQHRIIRCGGAVDDDMANIIVAQLLYLDA+DP+KDIVMYVNSPGGSVTAGMAIFDTMRH
Sbjct: 107  LFQHRIIRCGGAVDDDMANIIVAQLLYLDAVDPDKDIVMYVNSPGGSVTAGMAIFDTMRH 166

Query: 626  IRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEM 447
            IRPDVSTVCVGLAASMGAFLLS GTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEM
Sbjct: 167  IRPDVSTVCVGLAASMGAFLLSCGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEM 226

Query: 446  LHHKANLNGYLSYHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVI 306
            LHHKANLNGYLSYHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVI
Sbjct: 227  LHHKANLNGYLSYHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVI 273


>gb|ABA41488.1| ATP-dependent Clp protease proteolytic subunit [Carica papaya]
          Length = 306

 Score =  416 bits (1069), Expect = e-114
 Identities = 223/287 (77%), Positives = 239/287 (83%), Gaps = 6/287 (2%)
 Frame = -3

Query: 1148 HSCVSTSVRCNSHIFSSPTPNSLSADSHHPHQLALPFQPLRSERNLRRSVSRPWR----K 981
            H   ++S+R NS +FS P P+S    S     L LP +PLRS R L++ VS   +     
Sbjct: 7    HPTSASSLRFNSLLFS-PNPSS----SFESQSLCLPLEPLRS-RKLKKLVSNQKKVRNST 60

Query: 980  AKAVYYSDGFSSYPNRNSEQGIWSIRDDLQVPHSAYLSQ--GGQGPPPMVQERFQSVISQ 807
            AKAVY S+        +S QGIWSIRDDLQ+P S Y      GQGPPPMVQERFQSVISQ
Sbjct: 61   AKAVYTSN---LRMPESSHQGIWSIRDDLQIPSSPYFPAYAQGQGPPPMVQERFQSVISQ 117

Query: 806  LFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPNKDIVMYVNSPGGSVTAGMAIFDTMRH 627
            LFQHRIIRCGGAVDDDMANIIVAQLLYLDA+DPNKDIVMYVNSPGGSVTAGMA+FDTMRH
Sbjct: 118  LFQHRIIRCGGAVDDDMANIIVAQLLYLDAVDPNKDIVMYVNSPGGSVTAGMAVFDTMRH 177

Query: 626  IRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEM 447
            IRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEM
Sbjct: 178  IRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEM 237

Query: 446  LHHKANLNGYLSYHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVI 306
            LHHKANLN YL+YHTGQSLE+INQDTDRDFFMSAKEAKEYGLIDGVI
Sbjct: 238  LHHKANLNSYLAYHTGQSLERINQDTDRDFFMSAKEAKEYGLIDGVI 284


>ref|XP_002515273.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
            communis] gi|223545753|gb|EEF47257.1| ATP-dependent Clp
            protease proteolytic subunit, putative [Ricinus communis]
          Length = 305

 Score =  412 bits (1060), Expect = e-113
 Identities = 224/296 (75%), Positives = 247/296 (83%), Gaps = 13/296 (4%)
 Frame = -3

Query: 1154 MGHSCVSTS---VRCNSHIFSSPTPNSLSADSHHPHQLALPFQPLRSERNLR----RSVS 996
            M HS +S+S   +R  S +FS P P+S + DSH   +L+LPF+PLRS +  +    R  S
Sbjct: 1    MAHSLLSSSASSLRFGSLVFS-PNPSS-APDSH---KLSLPFEPLRSRKFRKLSSIRKNS 55

Query: 995  RPWRKAKAVYYSDGFSSYPNRNSEQGIWSIRDDLQVPHSAYL-----SQG-GQGPPPMVQ 834
            +P   AKAVY    ++  P + S QGIWSIRDDL++P S Y       QG  QGPPPMV 
Sbjct: 56   QP-SSAKAVYSGQFWA--PEKTSRQGIWSIRDDLEIPSSPYFPAYANGQGQAQGPPPMVH 112

Query: 833  ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPNKDIVMYVNSPGGSVTAG 654
            ERFQSVISQLFQ+RIIRCGGAVDDDMANIIVAQLLYLDA+DPNKDIVMYVNSPGGSVTAG
Sbjct: 113  ERFQSVISQLFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPNKDIVMYVNSPGGSVTAG 172

Query: 653  MAIFDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQT 474
            MAIFDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQ+
Sbjct: 173  MAIFDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQS 232

Query: 473  DIDIQANEMLHHKANLNGYLSYHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVI 306
            DIDIQANEMLHHKANLNGYL+YHTGQSLEKINQDTDRD+FMSAKEA +YGLIDGVI
Sbjct: 233  DIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSAKEATDYGLIDGVI 288