BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00001433
         (1059 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284107.1| PREDICTED: DNA-directed RNA polymerases I, I...   286   5e-75
ref|XP_002331171.1| predicted protein [Populus trichocarpa] gi|2...   286   8e-75
ref|XP_002514265.1| DNA-directed RNA polymerase II, putative [Ri...   280   3e-73
ref|XP_003610652.1| DNA-directed RNA polymerases I, II, and III ...   275   1e-71
ref|XP_002885498.1| ATRPABC24.3 [Arabidopsis lyrata subsp. lyrat...   275   1e-71

>ref|XP_002284107.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1 isoform 1 [Vitis vinifera]
           gi|225445172|ref|XP_002284110.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit RPABC1 isoform 2
           [Vitis vinifera]
          Length = 206

 Score =  286 bits (733), Expect = 5e-75
 Identities = 151/233 (64%), Positives = 183/233 (78%), Gaps = 1/233 (0%)
 Frame = -3

Query: 949 STDEEVTRLFRIRRTVMEMLKDRGYVVTEQEINMTRAEFLERYGGGMNSLKREHLDISRY 770
           +++EE++RLFRIR+TVM+MLKDRGY V + EINMT+ +F+ ++G  M   KRE L I++ 
Sbjct: 3   ASEEEISRLFRIRKTVMQMLKDRGYFVGDFEINMTKHQFVSKFGENM---KREDLVINKA 59

Query: 769 KE-GNTDQIYVFFPEEQKVGVKTMKTYTNRMKTDNVFRAILVVQQALTPFARNCVSEIQG 593
           K   ++DQIYVFFPEEQKVGVKTMKTYTNRMK++NVFRAILVVQQ LTPFAR C++EI  
Sbjct: 60  KRTDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEIST 119

Query: 592 KFHLEVFQEAELLVNISKHVLVPKQEVLSPADKKTLLERYTLKETQLPRMQLSDPIARYY 413
           KFHLEVFQEAELLVNI +HVLVP+ +VL+  +KKTLLERYT+KETQLPR+Q+SDPI    
Sbjct: 120 KFHLEVFQEAELLVNIKEHVLVPEHQVLTSEEKKTLLERYTVKETQLPRIQVSDPI---- 175

Query: 412 GXXXXXXXXXXXXXXXXXXXXIARYYGLKRGQVVKIIRPSETAGQYVTYRYVV 254
                                 ARY+GLKRGQVVKIIRPSETAG+Y+TYRYVV
Sbjct: 176 ----------------------ARYFGLKRGQVVKIIRPSETAGRYITYRYVV 206


>ref|XP_002331171.1| predicted protein [Populus trichocarpa] gi|222873254|gb|EEF10385.1|
           predicted protein [Populus trichocarpa]
          Length = 206

 Score =  286 bits (731), Expect = 8e-75
 Identities = 152/232 (65%), Positives = 179/232 (77%), Gaps = 1/232 (0%)
 Frame = -3

Query: 946 TDEEVTRLFRIRRTVMEMLKDRGYVVTEQEINMTRAEFLERYGGGMNSLKREHLDISRYK 767
           T+EE+ RL RIR+TVM+MLKDRGY V + EI MTR +F  +YG   N++KRE L I++ K
Sbjct: 4   TEEEIKRLLRIRKTVMQMLKDRGYFVGDFEIKMTREQFESKYG---NNMKREDLVINKTK 60

Query: 766 EGNT-DQIYVFFPEEQKVGVKTMKTYTNRMKTDNVFRAILVVQQALTPFARNCVSEIQGK 590
             ++ DQIYVFFPEE KVGVKTMKTYTNRMK++NVFRAILVVQQ LTPFAR C++EI  K
Sbjct: 61  RNDSSDQIYVFFPEEAKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISTK 120

Query: 589 FHLEVFQEAELLVNISKHVLVPKQEVLSPADKKTLLERYTLKETQLPRMQLSDPIARYYG 410
           FHLEVFQEAELLVNI +HVLVP+ +VLS  +KKTLLERYT+KETQLPR+Q++DPIA    
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLSNEEKKTLLERYTVKETQLPRIQITDPIA---- 176

Query: 409 XXXXXXXXXXXXXXXXXXXXIARYYGLKRGQVVKIIRPSETAGQYVTYRYVV 254
                                 RYYGLKRGQVVKIIRPSETAG+YVTYRYV+
Sbjct: 177 ----------------------RYYGLKRGQVVKIIRPSETAGRYVTYRYVI 206


>ref|XP_002514265.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
           gi|223546721|gb|EEF48219.1| DNA-directed RNA polymerase
           II, putative [Ricinus communis]
          Length = 225

 Score =  280 bits (717), Expect = 3e-73
 Identities = 152/251 (60%), Positives = 180/251 (71%), Gaps = 20/251 (7%)
 Frame = -3

Query: 946 TDEEVTRLFRIRRTVMEMLKDRGYVVTEQEINMTRAEFLERYGGGMNSLKREHLDISRYK 767
           +++E+ RLFRIRRTVM+MLKDR Y+VT+ EIN+T+ +F  +YG  M   KRE L I + K
Sbjct: 4   SEDEIKRLFRIRRTVMQMLKDRTYLVTDSEINITKHQFTSKYGDNM---KREDLVIHKSK 60

Query: 766 EGNTD--------------------QIYVFFPEEQKVGVKTMKTYTNRMKTDNVFRAILV 647
              +D                    QIYVFFPEEQKVGVKTMKTYTNRMK++NVFRAILV
Sbjct: 61  RDGSDSFYPTKLLFLNQLEAWLPLYQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILV 120

Query: 646 VQQALTPFARNCVSEIQGKFHLEVFQEAELLVNISKHVLVPKQEVLSPADKKTLLERYTL 467
           VQQ+LTPFAR C++EI  KFHLEVFQE+ELLVNI +HVLVP+ +VL+  +KKTLLERYT+
Sbjct: 121 VQQSLTPFARTCIAEIASKFHLEVFQESELLVNIKEHVLVPEHQVLTNEEKKTLLERYTV 180

Query: 466 KETQLPRMQLSDPIARYYGXXXXXXXXXXXXXXXXXXXXIARYYGLKRGQVVKIIRPSET 287
           KETQLPR+Q+SDPIA                          RYYGLKRGQVVKIIRPSET
Sbjct: 181 KETQLPRIQISDPIA--------------------------RYYGLKRGQVVKIIRPSET 214

Query: 286 AGQYVTYRYVV 254
           AG+YVTYRYVV
Sbjct: 215 AGRYVTYRYVV 225


>ref|XP_003610652.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
           [Medicago truncatula] gi|355511987|gb|AES93610.1|
           DNA-directed RNA polymerases I, II, and III subunit
           RPABC1 [Medicago truncatula]
          Length = 410

 Score =  275 bits (704), Expect = 1e-71
 Identities = 146/241 (60%), Positives = 184/241 (76%), Gaps = 1/241 (0%)
 Frame = -3

Query: 973 KKTIERRMSTDEEVTRLFRIRRTVMEMLKDRGYVVTEQEINMTRAEFLERYGGGMNSLKR 794
           KKT+   + ++EE+TRL+RIR+TVM+MLKDR Y+V + E+NM++ +F ++YG  M   KR
Sbjct: 202 KKTM---VFSEEEITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKYGENM---KR 255

Query: 793 EHLDISRYKEGN-TDQIYVFFPEEQKVGVKTMKTYTNRMKTDNVFRAILVVQQALTPFAR 617
           E L I++ K+   +DQIYVFFPEE KVGVKTMKTYTNRM ++NV+RAILV Q +LTPFA+
Sbjct: 256 EDLVINKTKKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFAK 315

Query: 616 NCVSEIQGKFHLEVFQEAELLVNISKHVLVPKQEVLSPADKKTLLERYTLKETQLPRMQL 437
            CVSEI  KFHLEVFQEAELLVNI +HVLVP+ ++L+  +KKTLLERYT+KETQLPR+Q+
Sbjct: 316 TCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQV 375

Query: 436 SDPIARYYGXXXXXXXXXXXXXXXXXXXXIARYYGLKRGQVVKIIRPSETAGQYVTYRYV 257
           +DP+A                          RYYGLKRGQVVKIIRPSETAG+YVTYR+V
Sbjct: 376 TDPVA--------------------------RYYGLKRGQVVKIIRPSETAGRYVTYRFV 409

Query: 256 V 254
           V
Sbjct: 410 V 410


>ref|XP_002885498.1| ATRPABC24.3 [Arabidopsis lyrata subsp. lyrata]
           gi|297331338|gb|EFH61757.1| ATRPABC24.3 [Arabidopsis
           lyrata subsp. lyrata]
          Length = 205

 Score =  275 bits (704), Expect = 1e-71
 Identities = 141/234 (60%), Positives = 177/234 (75%), Gaps = 1/234 (0%)
 Frame = -3

Query: 952 MSTDEEVTRLFRIRRTVMEMLKDRGYVVTEQEINMTRAEFLERYGGGMNSLKREHLDISR 773
           M T+EE+ RL+RI++T+M+MLKDRGY + + E+ MT+ +F+ ++G  M   KRE L   +
Sbjct: 1   MLTEEEIKRLYRIQKTLMQMLKDRGYFIADSELTMTKQQFIRKHGDNM---KREDLVTLK 57

Query: 772 YKEG-NTDQIYVFFPEEQKVGVKTMKTYTNRMKTDNVFRAILVVQQALTPFARNCVSEIQ 596
            K   N+DQ+Y+FFP+E KVGVKTMK YTNRMK++NV+RAILVVQQ LTPFAR C+SEI 
Sbjct: 58  VKRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVYRAILVVQQNLTPFARTCISEIS 117

Query: 595 GKFHLEVFQEAELLVNISKHVLVPKQEVLSPADKKTLLERYTLKETQLPRMQLSDPIARY 416
            KFHLEVFQEAE+LVNI +HVLVP+ +VL+  +KKTLLERYT+KETQLPR+Q++DPI   
Sbjct: 118 SKFHLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPI--- 174

Query: 415 YGXXXXXXXXXXXXXXXXXXXXIARYYGLKRGQVVKIIRPSETAGQYVTYRYVV 254
                                  ARY+GLKRGQVVKIIRPSETAG+YVTYRYVV
Sbjct: 175 -----------------------ARYFGLKRGQVVKIIRPSETAGRYVTYRYVV 205