BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00001400
         (282 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002306249.1| predicted protein [Populus trichocarpa] gi|1...    73   2e-11
ref|XP_003602547.1| Photosystem I reaction center subunit N [Med...    71   8e-11
ref|XP_003631913.1| PREDICTED: photosystem I reaction center sub...    69   5e-10
ref|XP_002309915.1| predicted protein [Populus trichocarpa] gi|2...    67   2e-09
pdb|2WSC|N Chain N, Improved Model Of Plant Photosystem I gi|268...    65   7e-09

>ref|XP_002306249.1| predicted protein [Populus trichocarpa] gi|118486634|gb|ABK95154.1|
           unknown [Populus trichocarpa]
           gi|222855698|gb|EEE93245.1| predicted protein [Populus
           trichocarpa]
          Length = 172

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 42/66 (63%), Positives = 51/66 (77%), Gaps = 2/66 (3%)
 Frame = +3

Query: 90  MAAVNSSVLACNYAISGP--SDPNWKLASSASVALPNLSGPKSPMIKAQQARASDMKDGK 263
           MAA+NSSVLACNYAISG   S+ N K+ S  +VA P +SGPK P+I+AQQARA D K+ K
Sbjct: 1   MAAMNSSVLACNYAISGTGSSELNAKIVSMPAVASPVVSGPKLPIIRAQQARA-DSKEMK 59

Query: 264 GSDGRR 281
            S+GRR
Sbjct: 60  ASEGRR 65


>ref|XP_003602547.1| Photosystem I reaction center subunit N [Medicago truncatula]
           gi|355491595|gb|AES72798.1| Photosystem I reaction
           center subunit N [Medicago truncatula]
           gi|388492560|gb|AFK34346.1| unknown [Medicago
           truncatula]
          Length = 172

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 39/64 (60%), Positives = 47/64 (73%)
 Frame = +3

Query: 90  MAAVNSSVLACNYAISGPSDPNWKLASSASVALPNLSGPKSPMIKAQQARASDMKDGKGS 269
           MAA+NSSVLAC+YAISG S+ N KL S  S A P +SG K P+IKAQQ R  + K+ + S
Sbjct: 1   MAAMNSSVLACSYAISG-SELNAKLISVPSAASPGVSGIKLPLIKAQQVRIPEAKESRAS 59

Query: 270 DGRR 281
           DGRR
Sbjct: 60  DGRR 63


>ref|XP_003631913.1| PREDICTED: photosystem I reaction center subunit N, chloroplastic
           [Vitis vinifera]
          Length = 173

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 39/66 (59%), Positives = 44/66 (66%), Gaps = 2/66 (3%)
 Frame = +3

Query: 90  MAAVNSSVLACNYAISGPSDP--NWKLASSASVALPNLSGPKSPMIKAQQARASDMKDGK 263
           MA+VNSSVLACNYAISG   P  N KL S  S A P ++G K P I+AQQAR SD K   
Sbjct: 1   MASVNSSVLACNYAISGAGAPELNSKLVSMPSAASPAVAGLKLPAIRAQQARVSDSKKWG 60

Query: 264 GSDGRR 281
             +GRR
Sbjct: 61  AGEGRR 66


>ref|XP_002309915.1| predicted protein [Populus trichocarpa] gi|222852818|gb|EEE90365.1|
           predicted protein [Populus trichocarpa]
          Length = 172

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 39/66 (59%), Positives = 49/66 (74%), Gaps = 2/66 (3%)
 Frame = +3

Query: 90  MAAVNSSVLACNYAIS--GPSDPNWKLASSASVALPNLSGPKSPMIKAQQARASDMKDGK 263
           MAA+NSSVLACNYAIS  G S+ N K+ S  +VA   +SGPK P+I+AQQ RA D ++ K
Sbjct: 1   MAAMNSSVLACNYAISGTGSSELNAKIVSMPAVASLVVSGPKLPVIRAQQTRA-DSREMK 59

Query: 264 GSDGRR 281
            S+GRR
Sbjct: 60  ASEGRR 65


>pdb|2WSC|N Chain N, Improved Model Of Plant Photosystem I
           gi|268612174|pdb|2WSE|N Chain N, Improved Model Of Plant
           Photosystem I gi|268612192|pdb|2WSF|N Chain N, Improved
           Model Of Plant Photosystem I gi|28629385|gb|AAO49652.1|
           photosystem I-N subunit [Phaseolus vulgaris]
          Length = 170

 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 34/59 (57%), Positives = 42/59 (71%)
 Frame = +3

Query: 90  MAAVNSSVLACNYAISGPSDPNWKLASSASVALPNLSGPKSPMIKAQQARASDMKDGKG 266
           M+A+NS+VLACNYA SG SD N KL S  SVA P LS  K P+IKA QA+ ++ K  +G
Sbjct: 1   MSAMNSTVLACNYARSGCSDLNAKLTSMPSVASPQLSALKLPLIKAHQAKVTESKSDQG 59