BLASTX nr result
ID: Cimicifuga21_contig00001329
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00001329
(1726 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002285479.1| PREDICTED: uncharacterized RNA-binding prote... 609 e-172
emb|CBI16387.3| unnamed protein product [Vitis vinifera] 596 e-168
ref|XP_003632115.1| PREDICTED: uncharacterized RNA-binding prote... 588 e-165
ref|XP_003597428.1| RNA-binding protein [Medicago truncatula] gi... 543 e-152
ref|XP_004152401.1| PREDICTED: polyadenylate-binding protein RBP... 539 e-150
>ref|XP_002285479.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like isoform
1 [Vitis vinifera]
Length = 447
Score = 609 bits (1570), Expect = e-172
Identities = 308/447 (68%), Positives = 338/447 (75%), Gaps = 2/447 (0%)
Frame = +2
Query: 176 QQQWTMSAGPQPHHHQQATTWSAAPS--YHQPTTLEEIRTLWIGDLQYWVDENYLNTCFS 349
QQQW P H AT S A + Y QPT++EE+RTLWIGDLQYWVDENYL++CF+
Sbjct: 8 QQQWM-----HPSHASAATVSSMASAQPYTQPTSVEEVRTLWIGDLQYWVDENYLHSCFA 62
Query: 350 HTGEVLSIKIIRNKLTGQPEGYGFVEFVSHAAAERILQAYNGTNMPGTEQPFRLNWASFG 529
HTGEV+SIKIIRNK+TGQPEGYGFVEFVSHAAAERILQAYNGT MPGTEQ FRLNWASFG
Sbjct: 63 HTGEVISIKIIRNKITGQPEGYGFVEFVSHAAAERILQAYNGTQMPGTEQTFRLNWASFG 122
Query: 530 IGERRPDAGPEHSIFVGDLAPDVTDYTLQETFRLQYPSVRGAKVVTDPNTGRSKGYGFVK 709
IGERRPDAGPEHSIFVGDLAPDVTDY LQETFR QYPSVRGAKVVTDPNTGR+KGYGFVK
Sbjct: 123 IGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRTKGYGFVK 182
Query: 710 FSDEMERNRSMNEMNGVYCSTRPMRISAATPKKTTGFQQQXXXXXXXXXXXXXXXXXXXX 889
FSDEMERNR+M EMNGVYCSTRPMRISAATPKKTTGFQQQ
Sbjct: 183 FSDEMERNRAMTEMNGVYCSTRPMRISAATPKKTTGFQQQ-YAAAAKALYPAPAYTTPPL 241
Query: 890 QTFPAVDNDVNNTTIFVGGLDPNVTDEELRQIFAQFGELVYVKIPPGKGCGFVQFGTRPS 1069
Q PA DND+NNTTIFVG LDPNVT+EEL+QIF+QFGELVYVKIP G+GCGFVQFGTR S
Sbjct: 242 QALPA-DNDINNTTIFVGNLDPNVTEEELKQIFSQFGELVYVKIPAGRGCGFVQFGTRTS 300
Query: 1070 AEEAMLRLNGTMIGQQTIRLSWGRSMTTKQDQPGAWAQSADPNQWSXXXXXXXXXXXXXX 1249
AEEA+ R+ GT+IGQ +R+SWGRS T KQD PG+W Q ADP+QWS
Sbjct: 301 AEEAIQRMQGTVIGQLVVRISWGRSPTAKQDLPGSWGQQADPSQWSSAYYGYGQGYDAYP 360
Query: 1250 XXXXXXPSLXXXXXXXXXXXXXXXVEGMQEMVAMTCTVPAVEQRDESYDPLCTLEVDKLN 1429
PSL EG+Q++ AM VPAVEQRDE YDPL T +VDKLN
Sbjct: 361 YGATQDPSLYAYGAYAGYLQYPQQAEGVQDLAAMAGAVPAVEQRDELYDPLATPDVDKLN 420
Query: 1430 AAYMATHGPTMVGRHLWLKTSALPQQA 1510
AAY+A HG ++GR LWLKTS Q A
Sbjct: 421 AAYLAVHGSAILGRSLWLKTSPFSQMA 447
>emb|CBI16387.3| unnamed protein product [Vitis vinifera]
Length = 445
Score = 596 bits (1537), Expect = e-168
Identities = 305/447 (68%), Positives = 334/447 (74%), Gaps = 2/447 (0%)
Frame = +2
Query: 176 QQQWTMSAGPQPHHHQQATTWSAAPS--YHQPTTLEEIRTLWIGDLQYWVDENYLNTCFS 349
QQQW P H AT S A + Y QPT++EE+RTLWIGDLQYWVDENYL++CF+
Sbjct: 8 QQQWM-----HPSHASAATVSSMASAQPYTQPTSVEEVRTLWIGDLQYWVDENYLHSCFA 62
Query: 350 HTGEVLSIKIIRNKLTGQPEGYGFVEFVSHAAAERILQAYNGTNMPGTEQPFRLNWASFG 529
HTGEV+SIKIIRNK+TGQPEGYGFVEFVSHAAAERILQAYNGT MPGTEQ FRLNWASFG
Sbjct: 63 HTGEVISIKIIRNKITGQPEGYGFVEFVSHAAAERILQAYNGTQMPGTEQTFRLNWASFG 122
Query: 530 IGERRPDAGPEHSIFVGDLAPDVTDYTLQETFRLQYPSVRGAKVVTDPNTGRSKGYGFVK 709
IGERRPDAGPEHSIFVGDLAPDVTDY LQETFR QYPSVRGAKVVTDPNTGR+KGYGFVK
Sbjct: 123 IGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRTKGYGFVK 182
Query: 710 FSDEMERNRSMNEMNGVYCSTRPMRISAATPKKTTGFQQQXXXXXXXXXXXXXXXXXXXX 889
FSDEMERNR+M EMNGVYCSTRPMRISAATPKKTTGFQQQ
Sbjct: 183 FSDEMERNRAMTEMNGVYCSTRPMRISAATPKKTTGFQQQ-YAAAAKALYPAPAYTTPPL 241
Query: 890 QTFPAVDNDVNNTTIFVGGLDPNVTDEELRQIFAQFGELVYVKIPPGKGCGFVQFGTRPS 1069
Q PA DND+NNTTIFVG LDPNVT+EEL+QIF+QFGELVYVKIP G+GCGFVQFGTR S
Sbjct: 242 QALPA-DNDINNTTIFVGNLDPNVTEEELKQIFSQFGELVYVKIPAGRGCGFVQFGTRTS 300
Query: 1070 AEEAMLRLNGTMIGQQTIRLSWGRSMTTKQDQPGAWAQSADPNQWSXXXXXXXXXXXXXX 1249
AEEA+ R+ GT+IGQ +R+SWGRS T KQD PG+W Q ADP+QWS
Sbjct: 301 AEEAIQRMQGTVIGQLVVRISWGRSPTAKQDLPGSWGQQADPSQWSSAYYGYGQGYDAYP 360
Query: 1250 XXXXXXPSLXXXXXXXXXXXXXXXVEGMQEMVAMTCTVPAVEQRDESYDPLCTLEVDKLN 1429
PSL + + AM VPAVEQRDE YDPL T +VDKLN
Sbjct: 361 YGATQDPSLYAYGAYAGYLQYPQ--QARYYLAAMAGAVPAVEQRDELYDPLATPDVDKLN 418
Query: 1430 AAYMATHGPTMVGRHLWLKTSALPQQA 1510
AAY+A HG ++GR LWLKTS Q A
Sbjct: 419 AAYLAVHGSAILGRSLWLKTSPFSQMA 445
>ref|XP_003632115.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like isoform
2 [Vitis vinifera]
Length = 438
Score = 588 bits (1516), Expect = e-165
Identities = 303/447 (67%), Positives = 332/447 (74%), Gaps = 2/447 (0%)
Frame = +2
Query: 176 QQQWTMSAGPQPHHHQQATTWSAAPS--YHQPTTLEEIRTLWIGDLQYWVDENYLNTCFS 349
QQQW P H AT S A + Y QPT++EE+RTLWIGDLQYWVDENYL++CF+
Sbjct: 8 QQQWM-----HPSHASAATVSSMASAQPYTQPTSVEEVRTLWIGDLQYWVDENYLHSCFA 62
Query: 350 HTGEVLSIKIIRNKLTGQPEGYGFVEFVSHAAAERILQAYNGTNMPGTEQPFRLNWASFG 529
HTGEV+SIKIIRNK+TGQPEGYGFVEFVSHAAAERILQAYNGT MPGTEQ FRLNWASFG
Sbjct: 63 HTGEVISIKIIRNKITGQPEGYGFVEFVSHAAAERILQAYNGTQMPGTEQTFRLNWASFG 122
Query: 530 IGERRPDAGPEHSIFVGDLAPDVTDYTLQETFRLQYPSVRGAKVVTDPNTGRSKGYGFVK 709
IGERRPDAGPEHSIFVGDLAPDVTDY LQETFR QYPSVRGAKVVTDPNTGR+KGYGFVK
Sbjct: 123 IGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRTKGYGFVK 182
Query: 710 FSDEMERNRSMNEMNGVYCSTRPMRISAATPKKTTGFQQQXXXXXXXXXXXXXXXXXXXX 889
FSDEMERNR+M EMNGVYCSTRPMRISAATPKKTTGFQQQ
Sbjct: 183 FSDEMERNRAMTEMNGVYCSTRPMRISAATPKKTTGFQQQ-YAAAAKALYPAPAYTTPPL 241
Query: 890 QTFPAVDNDVNNTTIFVGGLDPNVTDEELRQIFAQFGELVYVKIPPGKGCGFVQFGTRPS 1069
Q PA DND+NNTTIFVG LDPNVT+EEL+QIF+QFGELVYVKIP G+GCGFVQFGTR S
Sbjct: 242 QALPA-DNDINNTTIFVGNLDPNVTEEELKQIFSQFGELVYVKIPAGRGCGFVQFGTRTS 300
Query: 1070 AEEAMLRLNGTMIGQQTIRLSWGRSMTTKQDQPGAWAQSADPNQWSXXXXXXXXXXXXXX 1249
AEEA+ R+ GT+IGQ +R+SWGRS T KQ ADP+QWS
Sbjct: 301 AEEAIQRMQGTVIGQLVVRISWGRSPTAKQ---------ADPSQWSSAYYGYGQGYDAYP 351
Query: 1250 XXXXXXPSLXXXXXXXXXXXXXXXVEGMQEMVAMTCTVPAVEQRDESYDPLCTLEVDKLN 1429
PSL EG+Q++ AM VPAVEQRDE YDPL T +VDKLN
Sbjct: 352 YGATQDPSLYAYGAYAGYLQYPQQAEGVQDLAAMAGAVPAVEQRDELYDPLATPDVDKLN 411
Query: 1430 AAYMATHGPTMVGRHLWLKTSALPQQA 1510
AAY+A HG ++GR LWLKTS Q A
Sbjct: 412 AAYLAVHGSAILGRSLWLKTSPFSQMA 438
>ref|XP_003597428.1| RNA-binding protein [Medicago truncatula] gi|355486476|gb|AES67679.1|
RNA-binding protein [Medicago truncatula]
Length = 428
Score = 543 bits (1398), Expect = e-152
Identities = 273/429 (63%), Positives = 312/429 (72%), Gaps = 7/429 (1%)
Frame = +2
Query: 245 APSYHQPTTLEEIRTLWIGDLQYWVDENYLNTCFSHTGEVLSIKIIRNKLTGQPEGYGFV 424
A +YHQP +LEE+RTLWIGDLQYWVDENYL CFSHTGEV+SIKIIRNK+TGQPEGYGF+
Sbjct: 2 ATTYHQPASLEEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFI 61
Query: 425 EFVSHAAAERILQAYNGTNMPGTEQPFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTD 604
EFVSH+AAER+LQ YNGT MPGTEQ FRLNWASFGIGERRPDAGP+HSIFVGDLAPDVTD
Sbjct: 62 EFVSHSAAERVLQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTD 121
Query: 605 YTLQETFRLQYPSVRGAKVVTDPNTGRSKGYGFVKFSDEMERNRSMNEMNGVYCSTRPMR 784
Y LQETFR Y SVRGAKVVTDPNTGRSKGYGFVKFSDE ERNR+M+EMNGVYCSTRPMR
Sbjct: 122 YLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMR 181
Query: 785 ISAATPKKTTGFQQQXXXXXXXXXXXXXXXXXXXXQTFPAVDN-----DVNNTTIFVGGL 949
ISAATPKKTTG+QQ T V+ DVNNTTI+VG L
Sbjct: 182 ISAATPKKTTGYQQNPYAAVVAAAPVPKAIYPVPAYTTAPVNTVPPEYDVNNTTIYVGNL 241
Query: 950 DPNVTDEELRQIFAQFGELVYVKIPPGKGCGFVQFGTRPSAEEAMLRLNGTMIGQQTIRL 1129
D NV++EEL+Q F QFGE+V VK+ PGK CGFVQFG R SAEEA+ ++ G ++GQQ IR+
Sbjct: 242 DLNVSEEELKQNFLQFGEIVSVKVHPGKACGFVQFGARASAEEAIQKMQGKILGQQVIRV 301
Query: 1130 SWGRSMTTKQDQPGAWAQSADPNQWSXXXXXXXXXXXXXXXXXXXXPSLXXXXXXXXXXX 1309
SWGR T +QD PG W Q D +QWS PS+
Sbjct: 302 SWGRPQTARQDVPGGWGQQVDQSQWSAYYGYGQPGYEAYAYGAAQDPSMYAYAGYASYAQ 361
Query: 1310 XXXXVEGMQEMVAMTCTVPAVEQRDESYDPLCTLEVDKLNAAYMATHGPTMVGRHLWLKT 1489
VEG Q++ AM +VP +EQR+E YDPL +VDKLNAAY++ HG ++GR LW KT
Sbjct: 362 YPQQVEGAQDVSAM--SVPTLEQREELYDPLAMPDVDKLNAAYLSVHGNAILGRSLWHKT 419
Query: 1490 --SALPQQA 1510
S+L QQA
Sbjct: 420 HSSSLQQQA 428
>ref|XP_004152401.1| PREDICTED: polyadenylate-binding protein RBP47B'-like [Cucumis
sativus]
Length = 422
Score = 539 bits (1388), Expect = e-150
Identities = 274/425 (64%), Positives = 311/425 (73%)
Frame = +2
Query: 233 TWSAAPSYHQPTTLEEIRTLWIGDLQYWVDENYLNTCFSHTGEVLSIKIIRNKLTGQPEG 412
T + P++HQPTT+EE+RTLWIGDLQYWVDE+YLN+CF+HTGEV+SIKIIRNK+TGQPEG
Sbjct: 3 TLAGQPTHHQPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQPEG 62
Query: 413 YGFVEFVSHAAAERILQAYNGTNMPGTEQPFRLNWASFGIGERRPDAGPEHSIFVGDLAP 592
YGFVEFVSHAAAERILQ YNGT MPGTEQ FRLNWASFGIGERRPDAGPEHSIFVGDLAP
Sbjct: 63 YGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAP 122
Query: 593 DVTDYTLQETFRLQYPSVRGAKVVTDPNTGRSKGYGFVKFSDEMERNRSMNEMNGVYCST 772
DVTDY LQETFR QYPSVRGAKVVTDPNTGRSKGYGFVKF+DE ERNR+M+EMNGVYCST
Sbjct: 123 DVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYCST 182
Query: 773 RPMRISAATPKKTTGFQQQXXXXXXXXXXXXXXXXXXXXQTFPAVDNDVNNTTIFVGGLD 952
RPMRISAATPKKT G QQQ PA D D NNTTIFVG LD
Sbjct: 183 RPMRISAATPKKTIGVQQQ---YSLGKAMYPVPAYTTSVPVLPA-DYDANNTTIFVGNLD 238
Query: 953 PNVTDEELRQIFAQFGELVYVKIPPGKGCGFVQFGTRPSAEEAMLRLNGTMIGQQTIRLS 1132
PN+T+EEL+Q F QFGE+ YVKIP GKGCGFVQFGTR SAEEA+ ++ G +IGQQ +R S
Sbjct: 239 PNITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQVVRTS 298
Query: 1133 WGRSMTTKQDQPGAWAQSADPNQWSXXXXXXXXXXXXXXXXXXXXPSLXXXXXXXXXXXX 1312
WGR+ KQD W Q DPNQWS PSL
Sbjct: 299 WGRNPAAKQDLT-TWGQQVDPNQWS-AYYGYGGTYDAYGYGVVQDPSLYGYGAYSGYASY 356
Query: 1313 XXXVEGMQEMVAMTCTVPAVEQRDESYDPLCTLEVDKLNAAYMATHGPTMVGRHLWLKTS 1492
V+G+Q++ + VP+VEQ +E D L T +VD LN AY++ H ++G LWL TS
Sbjct: 357 PQQVDGVQDLATVAGAVPSVEQGEEWNDTLDTPDVDCLNDAYLSKHESAILGWPLWLTTS 416
Query: 1493 ALPQQ 1507
+L +Q
Sbjct: 417 SLVRQ 421