BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00001306
         (1934 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270244.2| PREDICTED: RNA-binding protein 40-like [Viti...   294   5e-77
ref|XP_003632078.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding ...   293   9e-77
emb|CBI36672.3| unnamed protein product [Vitis vinifera]              293   9e-77
ref|XP_002525464.1| RNA binding protein, putative [Ricinus commu...   284   5e-74
ref|XP_002319145.1| predicted protein [Populus trichocarpa] gi|2...   282   3e-73

>ref|XP_002270244.2| PREDICTED: RNA-binding protein 40-like [Vitis vinifera]
           gi|298205172|emb|CBI17231.3| unnamed protein product
           [Vitis vinifera]
          Length = 463

 Score =  294 bits (753), Expect = 5e-77
 Identities = 152/193 (78%), Positives = 167/193 (86%), Gaps = 2/193 (1%)
 Frame = -2

Query: 976 AIVGPAVDKDVAHEAVGLKPVSLVPKEIPMIKKKNTVLQIKLAAKPTPTEIKDDANNLKE 797
           AIVGP VDKDVAHEAVG+KP +LVPKEIPMIKKKN VLQIK+  K   TE KD+ + +KE
Sbjct: 270 AIVGPGVDKDVAHEAVGVKPATLVPKEIPMIKKKNPVLQIKIVPKVI-TEHKDECSIMKE 328

Query: 796 LR--ETEGLELKQYATTEDIESGKLPPEEILSLPMFKNYKAGNPATVLYIKNLAKDVVAD 623
               E E  +LK YAT E+++SGKLPPEEILSLPMFKNY AGNPA VLYIKNLAKDVV D
Sbjct: 329 SEDSEKEDFDLKPYATLEELKSGKLPPEEILSLPMFKNYTAGNPAPVLYIKNLAKDVVVD 388

Query: 622 DFFFIFGSLFGTVEEAKSGLSIKLMQEGRMRGQAFVTFPSVDLAHCALNLVNGYVFKGKP 443
           DF+FIFGSLFG+V+ AKSGLS+KLMQEGRMRGQAFVTFPSV+LAH ALNLVNGYVFKGKP
Sbjct: 389 DFYFIFGSLFGSVDAAKSGLSVKLMQEGRMRGQAFVTFPSVELAHHALNLVNGYVFKGKP 448

Query: 442 MIIQFGRNPAAGK 404
           MIIQFGRNPAA K
Sbjct: 449 MIIQFGRNPAAAK 461



 Score =  243 bits (620), Expect = 1e-61
 Identities = 130/186 (69%), Positives = 143/186 (76%), Gaps = 4/186 (2%)
 Frame = -2

Query: 1732 TLLVRHLPEGIPQDTLFRLFSHYGASAVRPCAAAGRLRNCAFVDFQTEALASQAHSQLNR 1553
            TLL+RHLPE IPQDTL RLFS YGAS+VRPC + GRLRNCAFVDF++E LASQA  QLN 
Sbjct: 22   TLLIRHLPEAIPQDTLSRLFSSYGASSVRPCTS-GRLRNCAFVDFKSEMLASQALRQLNG 80

Query: 1552 LRFLGKVLSVERATNPSHNDKKNQQQEEAPPYGKGSTPLPASLNKDASSTANLTKGANS- 1376
            LRFLGKVL VERA  P+ +DK    Q+    +GK  T  P SL KD +   +L +G  S 
Sbjct: 81   LRFLGKVLLVERANKPTEDDK----QKSEALFGKDLTK-PVSLIKDFTMARDLDEGLKSS 135

Query: 1375 ---VGEPIAPTLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNI 1205
                 EPIA  LG+DYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFY QVLHLMNKMNI
Sbjct: 136  SLPASEPIAARLGIDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYVQVLHLMNKMNI 195

Query: 1204 PAPFRM 1187
            PAPFRM
Sbjct: 196  PAPFRM 201


>ref|XP_003632078.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 40-like [Vitis
           vinifera]
          Length = 463

 Score =  293 bits (751), Expect = 9e-77
 Identities = 151/193 (78%), Positives = 167/193 (86%), Gaps = 2/193 (1%)
 Frame = -2

Query: 976 AIVGPAVDKDVAHEAVGLKPVSLVPKEIPMIKKKNTVLQIKLAAKPTPTEIKDDANNLKE 797
           AI GP VDKDVAHEAVG+KP +LVPKEIPMIKKKN VLQIK+A K   TE KD+ + +KE
Sbjct: 270 AIAGPGVDKDVAHEAVGVKPATLVPKEIPMIKKKNPVLQIKIAPKVI-TEHKDECSIMKE 328

Query: 796 LR--ETEGLELKQYATTEDIESGKLPPEEILSLPMFKNYKAGNPATVLYIKNLAKDVVAD 623
               E E  +LK YAT E+++SGKLPPEEILSLPMFKNY AGNPA VLYIKNLAKDVV D
Sbjct: 329 SEDSEKEDFDLKHYATLEELKSGKLPPEEILSLPMFKNYAAGNPAPVLYIKNLAKDVVVD 388

Query: 622 DFFFIFGSLFGTVEEAKSGLSIKLMQEGRMRGQAFVTFPSVDLAHCALNLVNGYVFKGKP 443
           DF+FIFGSLFG+V+ AKSGLS+KLMQEGRMRGQAFVTFPSV+LAH ALN+VNGYVFKGKP
Sbjct: 389 DFYFIFGSLFGSVDAAKSGLSVKLMQEGRMRGQAFVTFPSVELAHHALNVVNGYVFKGKP 448

Query: 442 MIIQFGRNPAAGK 404
           MIIQFGRNPAA K
Sbjct: 449 MIIQFGRNPAAAK 461



 Score =  230 bits (586), Expect = 1e-57
 Identities = 126/186 (67%), Positives = 140/186 (75%), Gaps = 4/186 (2%)
 Frame = -2

Query: 1732 TLLVRHLPEGIPQDTLFRLFSHYGASAVRPCAAAGRLRNCAFVDFQTEALASQAHSQLNR 1553
            TLL+RHLPE IPQDTL RLFS YGAS+VRP + +GRLRNCAFVDF++E LASQA  QLN 
Sbjct: 22   TLLIRHLPEAIPQDTLSRLFSSYGASSVRP-STSGRLRNCAFVDFKSEMLASQALRQLNG 80

Query: 1552 LRFLGKVLSVERATNPSHNDKKNQQQEEAPPYGKGSTPLPASLNKDASSTANLTKGANS- 1376
            LRFLGKVL VERA  P+ +DK    Q+    +GK  T  PASL KD +   +L +G  S 
Sbjct: 81   LRFLGKVLLVERANKPTEDDK----QKSEALFGKDLTK-PASLIKDFTMARDLGEGLKSS 135

Query: 1375 ---VGEPIAPTLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNI 1205
                 EPIA  LG+DYPFPPHLEY    PDGNILTNIVNALIAVPRFY QVLHLMNKMNI
Sbjct: 136  SLPASEPIAARLGIDYPFPPHLEYVXSHPDGNILTNIVNALIAVPRFYVQVLHLMNKMNI 195

Query: 1204 PAPFRM 1187
            PAPFRM
Sbjct: 196  PAPFRM 201


>emb|CBI36672.3| unnamed protein product [Vitis vinifera]
          Length = 263

 Score =  293 bits (751), Expect = 9e-77
 Identities = 151/193 (78%), Positives = 167/193 (86%), Gaps = 2/193 (1%)
 Frame = -2

Query: 976 AIVGPAVDKDVAHEAVGLKPVSLVPKEIPMIKKKNTVLQIKLAAKPTPTEIKDDANNLKE 797
           AI GP VDKDVAHEAVG+KP +LVPKEIPMIKKKN VLQIK+A K   TE KD+ + +KE
Sbjct: 70  AIAGPGVDKDVAHEAVGVKPATLVPKEIPMIKKKNPVLQIKIAPKVI-TEHKDECSIMKE 128

Query: 796 LR--ETEGLELKQYATTEDIESGKLPPEEILSLPMFKNYKAGNPATVLYIKNLAKDVVAD 623
               E E  +LK YAT E+++SGKLPPEEILSLPMFKNY AGNPA VLYIKNLAKDVV D
Sbjct: 129 SEDSEKEDFDLKHYATLEELKSGKLPPEEILSLPMFKNYAAGNPAPVLYIKNLAKDVVVD 188

Query: 622 DFFFIFGSLFGTVEEAKSGLSIKLMQEGRMRGQAFVTFPSVDLAHCALNLVNGYVFKGKP 443
           DF+FIFGSLFG+V+ AKSGLS+KLMQEGRMRGQAFVTFPSV+LAH ALN+VNGYVFKGKP
Sbjct: 189 DFYFIFGSLFGSVDAAKSGLSVKLMQEGRMRGQAFVTFPSVELAHHALNVVNGYVFKGKP 248

Query: 442 MIIQFGRNPAAGK 404
           MIIQFGRNPAA K
Sbjct: 249 MIIQFGRNPAAAK 261


>ref|XP_002525464.1| RNA binding protein, putative [Ricinus communis]
           gi|223535277|gb|EEF36954.1| RNA binding protein,
           putative [Ricinus communis]
          Length = 450

 Score =  284 bits (727), Expect = 5e-74
 Identities = 147/195 (75%), Positives = 166/195 (85%), Gaps = 2/195 (1%)
 Frame = -2

Query: 976 AIVGPAVDKDVAHEAVGLKPVSLVPKEIPMIKKKNTVLQIKLAAKPTPTEIKDDANNLKE 797
           AIVGP VDKDV HEAVGLKP SLVPKEIP+IKKKN VLQIK+A K + TE  DD + +KE
Sbjct: 257 AIVGPGVDKDVVHEAVGLKPSSLVPKEIPVIKKKNPVLQIKIAPKVSQTEQTDDIS-MKE 315

Query: 796 LRET--EGLELKQYATTEDIESGKLPPEEILSLPMFKNYKAGNPATVLYIKNLAKDVVAD 623
             E   EGL+ K +AT E++ES KL PEEILSLP FKNY  GNPA+VLYIKNL+KD+VAD
Sbjct: 316 SDEQDEEGLDHKPFATPEELESNKLAPEEILSLPQFKNYTVGNPASVLYIKNLSKDMVAD 375

Query: 622 DFFFIFGSLFGTVEEAKSGLSIKLMQEGRMRGQAFVTFPSVDLAHCALNLVNGYVFKGKP 443
           DFF+IFGSLFG+++ AK GLS+KLMQEGRMRGQAFVTFPSV+LAH ALNLVNGYVFKGKP
Sbjct: 376 DFFYIFGSLFGSLDAAKVGLSVKLMQEGRMRGQAFVTFPSVELAHQALNLVNGYVFKGKP 435

Query: 442 MIIQFGRNPAAGKAN 398
           MIIQFGRNP+A K N
Sbjct: 436 MIIQFGRNPSASKTN 450



 Score =  242 bits (617), Expect = 3e-61
 Identities = 127/184 (69%), Positives = 141/184 (76%), Gaps = 2/184 (1%)
 Frame = -2

Query: 1732 TLLVRHLPEGIPQDTLFRLFSHYGASAVRPCAAAGRLRNCAFVDFQTEALASQAHSQLNR 1553
            TLL+RHLPE IP +TL RLFSHYGA++VRPCA  GRL NCAFVDF+ EALA QA  QLN 
Sbjct: 10   TLLIRHLPEAIPHETLSRLFSHYGATSVRPCAG-GRLTNCAFVDFKNEALAYQAQRQLNG 68

Query: 1552 LRFLGKVLSVERATNPSHNDKKNQQQEEAPPYGKGSTPLPASLNKDASSTANLTKGANSV 1373
            LRFLGKVL+ E+A N   N+     Q EA    +    LP S++KDAS+  +    + SV
Sbjct: 69   LRFLGKVLAAEKANNNKPNENNVLTQSEAQI--RKDHTLPTSVDKDASAMIDTDGRSKSV 126

Query: 1372 --GEPIAPTLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPA 1199
               EPIAP LGVDYPFPPHLEY YPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPA
Sbjct: 127  PASEPIAPRLGVDYPFPPHLEYTYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPA 186

Query: 1198 PFRM 1187
            PFRM
Sbjct: 187  PFRM 190


>ref|XP_002319145.1| predicted protein [Populus trichocarpa] gi|222857521|gb|EEE95068.1|
           predicted protein [Populus trichocarpa]
          Length = 346

 Score =  282 bits (721), Expect = 3e-73
 Identities = 146/194 (75%), Positives = 163/194 (84%), Gaps = 1/194 (0%)
 Frame = -2

Query: 976 AIVGPAVDKDVAHEAVGLKPVSLVPKEIPMIKKKNTVLQIKLAAKPTPTEIKDDANNLK- 800
           AIVGPA DKDV HE+VGLKP SLVPKEIP+IKKKNTVLQIK+A K T  E KDD+   + 
Sbjct: 153 AIVGPAADKDVVHESVGLKPASLVPKEIPIIKKKNTVLQIKIAPKVTHNEYKDDSIMTES 212

Query: 799 ELRETEGLELKQYATTEDIESGKLPPEEILSLPMFKNYKAGNPATVLYIKNLAKDVVADD 620
           E   TEG + K YAT E+IES +L PEEILSLP FKNY  GNPA+VLYIKNL K+VVADD
Sbjct: 213 EDPGTEGSDQKHYATAEEIESKRLVPEEILSLPKFKNYTVGNPASVLYIKNLDKEVVADD 272

Query: 619 FFFIFGSLFGTVEEAKSGLSIKLMQEGRMRGQAFVTFPSVDLAHCALNLVNGYVFKGKPM 440
           FF+IFGSLFG+++ AKSGLS+KLMQEGRMRGQAFVTF SV+LAH ALNLVNGYVFK KPM
Sbjct: 273 FFYIFGSLFGSIDAAKSGLSVKLMQEGRMRGQAFVTFSSVELAHQALNLVNGYVFKDKPM 332

Query: 439 IIQFGRNPAAGKAN 398
           IIQFGRNP+A K N
Sbjct: 333 IIQFGRNPSAAKPN 346



 Score =  133 bits (335), Expect = 1e-28
 Identities = 67/83 (80%), Positives = 71/83 (85%), Gaps = 5/83 (6%)
 Frame = -2

Query: 1420 KDASSTANLTKGAN----SVGEPIAPTLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAV 1253
            KDAS T ++ +G+N       EPIAP LGVDYPFPPHLEYAYPPPDGNILTNIVNALIAV
Sbjct: 2    KDASVTRDVIEGSNFGSLPASEPIAPRLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAV 61

Query: 1252 PRFYTQ-VLHLMNKMNIPAPFRM 1187
            PRFYTQ VLHLMNKMNIPAPFRM
Sbjct: 62   PRFYTQVVLHLMNKMNIPAPFRM 84