BLASTX nr result

ID: Chrysanthemum21_contig00040078 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chrysanthemum21_contig00040078
         (437 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_023732989.1| F-box protein At5g03100-like [Lactuca sativa...    55   4e-06

>ref|XP_023732989.1| F-box protein At5g03100-like [Lactuca sativa]
 ref|XP_023732990.1| F-box protein At5g03100-like [Lactuca sativa]
 gb|PLY74513.1| hypothetical protein LSAT_7X24341 [Lactuca sativa]
          Length = 362

 Score = 55.5 bits (132), Expect = 4e-06
 Identities = 35/89 (39%), Positives = 43/89 (48%)
 Frame = +3

Query: 6   SLTIQGSHTXXXXXXXNVSSVIKAELNYYIXXXXXXXXXXXXXXXXXXXXXXXXXVHVKE 185
           SLTI+G+         NVSS+++A L+Y                            HVKE
Sbjct: 266 SLTIRGNLWLWKVLLGNVSSLVEANLDYNYKKLRHWETTPEEAEEEMLKGFMLKFRHVKE 325

Query: 186 VTIGESCLEALARLKAKGFICPSNLKVLG 272
           + IG  C EAL+RLKAKGFI PSN K  G
Sbjct: 326 IKIGVLCSEALSRLKAKGFITPSNAKWSG 354


Top