BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00049697
         (783 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_019173288.1| PREDICTED: uncharacterized protein LOC109168...   110   8e-24
gb|KYP73716.1| Retrovirus-related Pol polyprotein from transposo...   100   5e-21
emb|CAE02382.2| OSJNBb0080H08.8 [Oryza sativa Japonica Group]         101   2e-20
emb|CAN73119.1| hypothetical protein VITISV_020442 [Vitis vinifera]   100   2e-20
gb|AAV44166.1| putative polyprotein [Oryza sativa Japonica Group]      99   8e-20
emb|CAD41297.2| OSJNBa0020J04.2 [Oryza sativa Japonica Group]          99   1e-19
emb|CAE05248.2| OSJNBb0115I09.10 [Oryza sativa Japonica Group]         97   7e-19
gb|ABA93790.1| retrotransposon protein, putative, Ty1-copia subc...    97   7e-19
gb|ABA99134.1| retrotransposon protein, putative, Ty1-copia subc...    96   9e-19
gb|EEE67150.1| hypothetical protein OsJ_24213 [Oryza sativa Japo...    96   1e-18
gb|AAU44091.1| putative polyprotein [Oryza sativa Japonica Group]      96   1e-18
dbj|BAB03249.1| polyprotein [Oryza sativa]                             96   1e-18
gb|AAV43959.2| putative polyprotein [Oryza sativa Japonica Group]      96   1e-18
gb|ABA96132.1| retrotransposon protein, putative, Ty1-copia subc...    96   1e-18
gb|AAM19019.1|AC084748_9 putative polyprotein [Oryza sativa Japo...    96   1e-18
gb|ABF99156.1| retrotransposon protein, putative, Ty1-copia subc...    96   1e-18
gb|ABG66099.1| retrotransposon protein, putative, Ty1-copia subc...    96   1e-18
gb|AAG13538.1|AC023240_11 putative gag-pol polyprotein [Oryza sa...    96   2e-18
gb|AAP54390.2| retrotransposon protein, putative, Ty1-copia subc...    96   2e-18
gb|AAK39592.1|AC025296_27 putative retrotransposon polyprotein [...    95   2e-18

>ref|XP_019173288.1| PREDICTED: uncharacterized protein LOC109168888 [Ipomoea nil]
          Length = 1079

 Score =  110 bits (276), Expect = 8e-24
 Identities = 71/204 (34%), Positives = 113/204 (55%), Gaps = 11/204 (5%)
 Frame = +2

Query: 26   YSKAIDSLLFLTNRTRPDIAYVV---SRYISNFSGLYWTIIKRVFKYLREKINYVLTYSG 196
            Y+K I SL+FL N TRPDIA  V   SRY  N S  +W  +KRV +YLR  + + L Y+G
Sbjct: 861  YAKIIGSLMFLMNYTRPDIALAVNRLSRYTHNPSEAHWHALKRVLRYLRGTVEWGLNYTG 920

Query: 197  YFSVLESLCDTNWISDSNNVNST--YR*SSP*VEVTFLGNLQNKL*KLRALWKLS**L*T 370
            + +VLE  CD NW++DS++V+ST  Y  +     V++    Q+ + +     +       
Sbjct: 921  FPNVLEGYCDANWVNDSDDVSSTSGYVFTMGEAAVSWKSTKQSCIARSTMEAEFI----- 975

Query: 371  *RALKLNG------LNLCSSIPMTISINTPIFIQCDNNAAIILCKKKLGNTKLSKHIKIR 532
              AL L G       NL + +P+  +    I I CD+  AI + K  + N K  +HI++R
Sbjct: 976  --ALDLAGQESEWLRNLLADMPLWGNSTPSIHIHCDSQTAICVAKNSMYNVK-RRHIRVR 1032

Query: 533  QKAIRRLSTHNIVSLLYVKTNDNL 604
             +++R+L  + +++L YVK+  N+
Sbjct: 1033 HESVRQLIVNGVITLEYVKSEKNI 1056


>gb|KYP73716.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 304

 Score = 99.8 bits (247), Expect = 5e-21
 Identities = 70/207 (33%), Positives = 106/207 (51%), Gaps = 14/207 (6%)
 Frame = +2

Query: 26  YSKAIDSLLFLTNRTRPDIAYVVSR---YISNFSGLYWTIIKRVFKYLREKINYVLTYSG 196
           YS+ I SLL L+N +RPDIAY V R   Y  N    +W  ++R+F+YL+  +NY + Y+ 
Sbjct: 98  YSQIIGSLLHLSNFSRPDIAYAVGRLGRYTHNPDHSHWLALERLFRYLKGTVNYGIHYAC 157

Query: 197 YFSVLESLCDTNWISDSNNVNSTYR*SSP*VEVTFLGNLQNKL*KLRALWKLS**L*T*R 376
           Y  V+E  CD NWISDS+   ST    S  V     G +  K  K   + + +       
Sbjct: 158 YPVVIEGFCDANWISDSDETKST----SGYVFTLAGGAVAWKSAKQTIISRST------M 207

Query: 377 ALKLNGLNLCSS-----------IPMTISINTPIFIQCDNNAAIILCKKKLGNTKLSKHI 523
             ++  L+  SS           +P+      PI + CD+  AII    K  N K  +H+
Sbjct: 208 EAEIIALDTASSEAEFLKNLLYDLPLLNKPIPPISMHCDSQVAIIKVTSKNFNEK-RRHL 266

Query: 524 KIRQKAIRRLSTHNIVSLLYVKTNDNL 604
           +IR K IR L TH ++S+ ++++ +NL
Sbjct: 267 RIRHKFIRNLITHGVISVDFIRSENNL 293


>emb|CAE02382.2| OSJNBb0080H08.8 [Oryza sativa Japonica Group]
          Length = 1183

 Score =  101 bits (251), Expect = 2e-20
 Identities = 68/207 (32%), Positives = 104/207 (50%), Gaps = 14/207 (6%)
 Frame = +2

Query: 26   YSKAIDSLLFLTNRTRPDIAYVVS---RYISNFSGLYWTIIKRVFKYLREKINYVLTYSG 196
            YS+ I SL++L N TRPDI++ VS   R++SN    +W  ++RV +YL+  ++Y + Y+G
Sbjct: 962  YSQIIGSLMYLANATRPDISFAVSKLSRFVSNPGDDHWQTLERVMRYLKGTMSYAIHYTG 1021

Query: 197  YFSVLESLCDTNWISDSNNVNSTYR*SSP*VEVTFLGNLQNKL*KLRALWKLS**L*T*R 376
            Y  VLE   D+NWISD++ + +T    S  V     G +  K  K   L + +       
Sbjct: 1022 YPKVLEGYSDSNWISDADEIKAT----SGYVFTLGGGAVSWKSCKQTILTRST------M 1071

Query: 377  ALKLNGLN-----------LCSSIPMTISINTPIFIQCDNNAAIILCKKKLGNTKLSKHI 523
              +L  L+           L   +PM       I + CDN   II       N K S+HI
Sbjct: 1072 EAELTALDTATVEAEWLRELLMDLPMVEKPMPAILMNCDNQTVIIKVNSSKDNMKSSRHI 1131

Query: 524  KIRQKAIRRLSTHNIVSLLYVKTNDNL 604
            K R K++R+     +++L YV+T  NL
Sbjct: 1132 KRRLKSVRKQKNSGVIALDYVQTAKNL 1158


>emb|CAN73119.1| hypothetical protein VITISV_020442 [Vitis vinifera]
          Length = 588

 Score =  100 bits (249), Expect = 2e-20
 Identities = 72/206 (34%), Positives = 109/206 (52%), Gaps = 12/206 (5%)
 Frame = +2

Query: 26  YSKAIDSLLFLTNRTRPDIAYVVSRYISNFSGL---YWTIIKRVFKYLREKINYVLTYSG 196
           Y++ I SL++L N T+PDIAY + R   N       +WT+++RV KYLR  INY L +SG
Sbjct: 357 YAQIIGSLMYLMNCTKPDIAYAIGRLSRNTQSPNQDHWTVVRRVLKYLRGTINYGLCFSG 416

Query: 197 YFSVLESLCDTNWISDSNNVNST---------YR*SSP*VEVTFLGNLQNKL*KLRALWK 349
           + SVLE   D NWISDS+ + ST            S    + T++     +  +  AL K
Sbjct: 417 FPSVLEGFSDANWISDSDEMESTSGYVFILGGSLVSWKSAKQTYIARSTMEA-EFIALEK 475

Query: 350 LS**L*T*RALKLNGLNLCSSIPMTISINTPIFIQCDNNAAIILCKKKLGNTKLSKHIKI 529
           +S       A  L   NL + IP+   +   + ++CD+ A I   K K+ N K +KHI++
Sbjct: 476 IS-----SEAEWLR--NLLADIPLWTRLAPSMSMRCDSQATIAKAKSKIFNGK-NKHIRL 527

Query: 530 RQKAIRRLSTHNIVSLLYVKTNDNLV 607
               + +L    ++SL +VK+  NLV
Sbjct: 528 SHNIVWQLLESRVISLEFVKSELNLV 553


>gb|AAV44166.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1342

 Score = 99.4 bits (246), Expect = 8e-20
 Identities = 67/210 (31%), Positives = 105/210 (50%), Gaps = 17/210 (8%)
 Frame = +2

Query: 26   YSKAIDSLLFLTNRTRPDIAYVVS---RYISNFSGLYWTIIKRVFKYLREKINYVLTYSG 196
            YS+ I SL++L + TRPDI++ VS   R++SN    +W  +KRV +YL+  ++Y + Y+G
Sbjct: 1121 YSQIIGSLMYLASATRPDISFAVSKLSRFVSNPEDDHWQALKRVMRYLKGTMSYGIHYTG 1180

Query: 197  YFSVLESLCDTNWISDSNNVNSTYR*SSP*VEVTFL---GNLQNKL*KLRALWKLS**L* 367
            Y  VLE   D+NWISD++ + +T        E  F    G +  K  K   L + +    
Sbjct: 1181 YPKVLEGYSDSNWISDADEIKAT-------SEYAFTLGGGAVSWKSCKQTILTRST---- 1229

Query: 368  T*RALKLNGLN-----------LCSSIPMTISINTPIFIQCDNNAAIILCKKKLGNTKLS 514
                 +L  L+           L   +P+   +   I + CDN   II       N K S
Sbjct: 1230 --MEAELTALDTATVEAEWLRELLMDLPVVEKVVPAILMNCDNQTVIIKVNSSKDNMKSS 1287

Query: 515  KHIKIRQKAIRRLSTHNIVSLLYVKTNDNL 604
            +HIK R K++R+     +++L YV+T  NL
Sbjct: 1288 RHIKRRLKSVRKQKNSGVIALDYVQTARNL 1317


>emb|CAD41297.2| OSJNBa0020J04.2 [Oryza sativa Japonica Group]
          Length = 1537

 Score = 99.0 bits (245), Expect = 1e-19
 Identities = 65/201 (32%), Positives = 101/201 (50%), Gaps = 14/201 (6%)
 Frame = +2

Query: 26   YSKAIDSLLFLTNRTRPDIAYVVS---RYISNFSGLYWTIIKRVFKYLREKINYVLTYSG 196
            YS+ I SL++L + TRPDI++ VS   R++SN    +W  ++RV +YL+  ++Y + Y+G
Sbjct: 1347 YSQIIGSLMYLASATRPDISFAVSKLSRFVSNLVDDHWQALERVMRYLKGTMSYGIHYTG 1406

Query: 197  YFSVLESLCDTNWISDSNNVNSTYR*SSP*VEVTFLGNLQNKL*KLRALWKLS**L*T*R 376
            Y  VLE   D+NWISD++ + +T    S  V     G +  K  K   L + +       
Sbjct: 1407 YLKVLEGYSDSNWISDADEIKAT----SGYVFTLGGGTVSWKSCKQTILTRST------M 1456

Query: 377  ALKLNGLN-----------LCSSIPMTISINTPIFIQCDNNAAIILCKKKLGNTKLSKHI 523
              +L GL+           L   +P+       I   CDN   II       N K S+HI
Sbjct: 1457 EAELTGLDTATVEAEWLRELLMDLPVVEKPVPAILTNCDNQTVIIKVNSSKDNVKSSRHI 1516

Query: 524  KIRQKAIRRLSTHNIVSLLYV 586
            KIR K++R+     +++L YV
Sbjct: 1517 KIRLKSVRKQKNSGVIALDYV 1537


>emb|CAE05248.2| OSJNBb0115I09.10 [Oryza sativa Japonica Group]
          Length = 1321

 Score = 96.7 bits (239), Expect = 7e-19
 Identities = 66/207 (31%), Positives = 105/207 (50%), Gaps = 14/207 (6%)
 Frame = +2

Query: 26   YSKAIDSLLFLTNRTRPDIAYVVS---RYISNFSGLYWTIIKRVFKYLREKINYVLTYSG 196
            YS+ I SL++L + TRPDI++ VS   R++SN    +W  ++RV +YL+  ++Y + Y+G
Sbjct: 1100 YSQIIGSLMYLASATRPDISFAVSKLSRFVSNPGDDHWQALERVMRYLKGTMSYGIHYTG 1159

Query: 197  YFSVLESLCDTNWISDSNNVNSTYR*SSP*VEVTFLGNLQNKL*KLRALWKLS**L*T*R 376
            Y  VLE   D+NWISD++ + +T    S  V     G++  K  K   L + +       
Sbjct: 1160 YPKVLEGYSDSNWISDADEIKAT----SGYVFTLGGGDVSWKSCKQTILTRST------M 1209

Query: 377  ALKLNGLN-----------LCSSIPMTISINTPIFIQCDNNAAIILCKKKLGNTKLSKHI 523
              +L  L+           L   +P+       I + CDN   II       N K S+HI
Sbjct: 1210 EAELTALDTATVEAEWLRELLMDLPVVEKPVPAILMNCDNQTMIIKVNSSKDNMKSSRHI 1269

Query: 524  KIRQKAIRRLSTHNIVSLLYVKTNDNL 604
            K R K++R+     +++L YV+T  NL
Sbjct: 1270 KRRLKSVRKQKNSGVIALDYVQTARNL 1296


>gb|ABA93790.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1370

 Score = 96.7 bits (239), Expect = 7e-19
 Identities = 65/207 (31%), Positives = 104/207 (50%), Gaps = 14/207 (6%)
 Frame = +2

Query: 26   YSKAIDSLLFLTNRTRPDIAYVVS---RYISNFSGLYWTIIKRVFKYLREKINYVLTYSG 196
            YS+ I SL++L + TRPDI++ VS   R++SN    +W  ++RV  YL+  ++Y + Y+G
Sbjct: 1149 YSQIIGSLMYLASATRPDISFAVSKLSRFVSNLGDDHWHALERVMHYLKGTMSYGIHYAG 1208

Query: 197  YFSVLESLCDTNWISDSNNVNSTYR*SSP*VEVTFLGNLQNKL*KLRALWKLS**L*T*R 376
            Y  VLE   D+NWISD++ + +T    S  V     G +  K  K   L + +       
Sbjct: 1209 YPKVLEGYSDSNWISDADEIKAT----SGYVFTLGGGAVSWKSCKQTILTRST------M 1258

Query: 377  ALKLNGLN-----------LCSSIPMTISINTPIFIQCDNNAAIILCKKKLGNTKLSKHI 523
             ++L  L+           L   +P+       I + CDN   +I       N K S+H+
Sbjct: 1259 EVELTSLDTATVEAEWLRELLMDLPVVEKPVPAILMNCDNQTVVIKVNSSKDNMKSSRHV 1318

Query: 524  KIRQKAIRRLSTHNIVSLLYVKTNDNL 604
            K R K+IR+     +++L YV+T  NL
Sbjct: 1319 KRRLKSIRKQKNSGVIALDYVQTAKNL 1345


>gb|ABA99134.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1083

 Score = 96.3 bits (238), Expect = 9e-19
 Identities = 65/207 (31%), Positives = 104/207 (50%), Gaps = 14/207 (6%)
 Frame = +2

Query: 26   YSKAIDSLLFLTNRTRPDIAYVVS---RYISNFSGLYWTIIKRVFKYLREKINYVLTYSG 196
            YS+ I SL++L + TRPDI++ VS   R++SN    +W  ++RV +YL+  ++Y + Y+G
Sbjct: 862  YSQIIGSLMYLASATRPDISFAVSKLSRFVSNPGDDHWQALERVMRYLKGTMSYEIHYTG 921

Query: 197  YFSVLESLCDTNWISDSNNVNSTYR*SSP*VEVTFLGNLQNKL*KLRALWKLS**L*T*R 376
            Y  VLE   D+NWISD++ + +T R     V     G +  K  K   L + +       
Sbjct: 922  YPKVLEGYSDSNWISDADEIKATSR----YVFTLGGGAVSWKSCKQTILTRST------M 971

Query: 377  ALKLNGLN-----------LCSSIPMTISINTPIFIQCDNNAAIILCKKKLGNTKLSKHI 523
              +L  L+           L   +P+       I + CDN   II       N K S+H+
Sbjct: 972  EAELTALDTATVEAEWLRELLMDLPVVEKPVPAILMNCDNQIVIIKVNSSKDNMKSSRHV 1031

Query: 524  KIRQKAIRRLSTHNIVSLLYVKTNDNL 604
            K R K++R+     +++L YV+T  NL
Sbjct: 1032 KRRLKSVRKQKNSRVIALDYVQTAKNL 1058


>gb|EEE67150.1| hypothetical protein OsJ_24213 [Oryza sativa Japonica Group]
          Length = 1028

 Score = 95.9 bits (237), Expect = 1e-18
 Identities = 66/207 (31%), Positives = 104/207 (50%), Gaps = 14/207 (6%)
 Frame = +2

Query: 26   YSKAIDSLLFLTNRTRPDIAYVVS---RYISNFSGLYWTIIKRVFKYLREKINYVLTYSG 196
            YS+ I SL++L + TRPDI++ VS   R++SN    +W  ++RV +YL+  ++Y + Y+G
Sbjct: 807  YSQIIGSLMYLASATRPDISFAVSKLSRFVSNPEDDHWQALERVMRYLKGTMSYGIHYTG 866

Query: 197  YFSVLESLCDTNWISDSNNVNSTYR*SSP*VEVTFLGNLQNKL*KLRALWKLS**L*T*R 376
            Y  VLE   D+NWISD++ + +T    S  V     G +  K  K   L + +       
Sbjct: 867  YPKVLEGYSDSNWISDADEIKAT----SGYVFTLGGGAVSWKSCKQTILTRST------M 916

Query: 377  ALKLNGLN-----------LCSSIPMTISINTPIFIQCDNNAAIILCKKKLGNTKLSKHI 523
              +L  L+           L   +P+       I + CDN   II       N K S+HI
Sbjct: 917  EAELTALDTATVEAEWLRELLMDLPVVEKPVPAILMNCDNQTVIIKVNSSKDNMKSSRHI 976

Query: 524  KIRQKAIRRLSTHNIVSLLYVKTNDNL 604
            K R K++R+     +++L YV+T  NL
Sbjct: 977  KRRLKSVRKQKNSEVIALDYVQTARNL 1003


>gb|AAU44091.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1117

 Score = 95.9 bits (237), Expect = 1e-18
 Identities = 65/207 (31%), Positives = 104/207 (50%), Gaps = 14/207 (6%)
 Frame = +2

Query: 26   YSKAIDSLLFLTNRTRPDIAYVVS---RYISNFSGLYWTIIKRVFKYLREKINYVLTYSG 196
            YSK I SL++L + TRPDI++ +S   R++SN    +W  ++RV +YL+  ++Y + Y+G
Sbjct: 896  YSKIIGSLMYLASATRPDISFAMSKLSRFVSNPGDDHWQALERVMRYLKGTMSYGIHYTG 955

Query: 197  YFSVLESLCDTNWISDSNNVNSTYR*SSP*VEVTFLGNLQNKL*KLRALWKLS**L*T*R 376
            Y  VLE   D+NWISD++ + +T    S  V     G +  K  K   L + +       
Sbjct: 956  YPKVLEGYSDSNWISDADEIKAT----SGYVFTLGGGAVSWKSCKQTILTRST------M 1005

Query: 377  ALKLNGLN-----------LCSSIPMTISINTPIFIQCDNNAAIILCKKKLGNTKLSKHI 523
              +L  L+           L   +P+       I + CDN   II       N K S+H+
Sbjct: 1006 EAELTALDTATVEAEWLRELLMDLPVIEKPVPAILMNCDNQTVIIKVNSSKDNMKSSRHV 1065

Query: 524  KIRQKAIRRLSTHNIVSLLYVKTNDNL 604
            K R K++R+     +++L YV+T  NL
Sbjct: 1066 KRRLKSVRKQKNSGVIALDYVQTAKNL 1092


>dbj|BAB03249.1| polyprotein [Oryza sativa]
          Length = 1268

 Score = 95.9 bits (237), Expect = 1e-18
 Identities = 66/207 (31%), Positives = 104/207 (50%), Gaps = 14/207 (6%)
 Frame = +2

Query: 26   YSKAIDSLLFLTNRTRPDIAYVVS---RYISNFSGLYWTIIKRVFKYLREKINYVLTYSG 196
            YS+ I SL++L + TRPDI++ VS   R++SN    +W  ++RV +YL+  ++Y + Y+G
Sbjct: 1047 YSQIIGSLMYLASATRPDISFAVSKLSRFVSNPGDDHWQALERVMRYLKGTMSYGIHYTG 1106

Query: 197  YFSVLESLCDTNWISDSNNVNSTYR*SSP*VEVTFLGNLQNKL*KLRALWKLS**L*T*R 376
            Y  VLE   D+NWISD++ + +T    S  V     G +  K  K   L + +       
Sbjct: 1107 YPKVLEGYSDSNWISDADEIKAT----SGYVFTLGGGAVSWKSCKQTILTRST------M 1156

Query: 377  ALKLNGLN-----------LCSSIPMTISINTPIFIQCDNNAAIILCKKKLGNTKLSKHI 523
              +L  L+           L   +P+       I + CDN   II       N K S+HI
Sbjct: 1157 EAELTALDTATVEAEWLRELLMDLPVVEKPVPAILMNCDNQTVIIKVNSSKDNMKSSRHI 1216

Query: 524  KIRQKAIRRLSTHNIVSLLYVKTNDNL 604
            K R K++R+     +++L YV+T  NL
Sbjct: 1217 KRRLKSVRKQKNSGVIALDYVQTARNL 1243


>gb|AAV43959.2| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1268

 Score = 95.9 bits (237), Expect = 1e-18
 Identities = 66/207 (31%), Positives = 104/207 (50%), Gaps = 14/207 (6%)
 Frame = +2

Query: 26   YSKAIDSLLFLTNRTRPDIAYVVS---RYISNFSGLYWTIIKRVFKYLREKINYVLTYSG 196
            YS+ I SL++L + TRPDI++ VS   R++SN    +W  ++RV +YL+  ++Y + Y+G
Sbjct: 1047 YSQIIGSLMYLASATRPDISFAVSKLSRFVSNPGDDHWQALERVMRYLKGTMSYGIHYTG 1106

Query: 197  YFSVLESLCDTNWISDSNNVNSTYR*SSP*VEVTFLGNLQNKL*KLRALWKLS**L*T*R 376
            Y  VLE   D+NWISD++ + +T    S  V     G +  K  K   L + +       
Sbjct: 1107 YPKVLEGYSDSNWISDADEIKAT----SGYVFTLGGGAVSWKSCKQTILTRST------M 1156

Query: 377  ALKLNGLN-----------LCSSIPMTISINTPIFIQCDNNAAIILCKKKLGNTKLSKHI 523
              +L  L+           L   +P+       I + CDN   II       N K S+HI
Sbjct: 1157 ETELTALDTATVEAEWLRELLMDLPVVEKPVPAILMNCDNQTVIIKVNSSKDNMKSSRHI 1216

Query: 524  KIRQKAIRRLSTHNIVSLLYVKTNDNL 604
            K R K++R+     +++L YV+T  NL
Sbjct: 1217 KRRLKSVRKQKNSGVITLDYVQTARNL 1243


>gb|ABA96132.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1357

 Score = 95.9 bits (237), Expect = 1e-18
 Identities = 66/207 (31%), Positives = 104/207 (50%), Gaps = 14/207 (6%)
 Frame = +2

Query: 26   YSKAIDSLLFLTNRTRPDIAYVVS---RYISNFSGLYWTIIKRVFKYLREKINYVLTYSG 196
            YS+ I SL++L + TRPDI++ VS   R++SN    +W  ++RV +YL+  ++Y + Y+G
Sbjct: 1136 YSQIIGSLMYLASATRPDISFAVSKLSRFVSNPGDDHWQALERVMRYLKGTMSYGIHYTG 1195

Query: 197  YFSVLESLCDTNWISDSNNVNSTYR*SSP*VEVTFLGNLQNKL*KLRALWKLS**L*T*R 376
            Y  VLE   D+NWISD++ + +T    S  V     G +  K  K   L + +       
Sbjct: 1196 YPKVLEGYSDSNWISDADEIKAT----SGYVFTLGGGAVSWKSCKQTILTRST------M 1245

Query: 377  ALKLNGLN-----------LCSSIPMTISINTPIFIQCDNNAAIILCKKKLGNTKLSKHI 523
              +L  L+           L   +P+       I + CDN   II       N K S+HI
Sbjct: 1246 EAELTALDTATVEAEWLRELLMDLPVVEKPVPAILMNCDNQTVIIKVNSSKDNMKSSRHI 1305

Query: 524  KIRQKAIRRLSTHNIVSLLYVKTNDNL 604
            K R K++R+     +++L YV+T  NL
Sbjct: 1306 KRRLKSVRKQKNSGVIALDYVQTARNL 1332


>gb|AAM19019.1|AC084748_9 putative polyprotein [Oryza sativa Japonica Group]
          Length = 1394

 Score = 95.9 bits (237), Expect = 1e-18
 Identities = 66/207 (31%), Positives = 104/207 (50%), Gaps = 14/207 (6%)
 Frame = +2

Query: 26   YSKAIDSLLFLTNRTRPDIAYVVS---RYISNFSGLYWTIIKRVFKYLREKINYVLTYSG 196
            YS+ I SL++L + TRPDI++ VS   R++SN    +W  ++RV +YL+  ++Y + Y+G
Sbjct: 1173 YSQIIGSLMYLASATRPDISFAVSKLSRFVSNPGDDHWQALERVMRYLKGTMSYGIHYTG 1232

Query: 197  YFSVLESLCDTNWISDSNNVNSTYR*SSP*VEVTFLGNLQNKL*KLRALWKLS**L*T*R 376
            Y  VLE   D+NWISD++ + +T    S  V     G +  K  K   L + +       
Sbjct: 1233 YPKVLEGYSDSNWISDADEIKAT----SGYVFTLGGGAVSWKSCKQTILTRST------M 1282

Query: 377  ALKLNGLN-----------LCSSIPMTISINTPIFIQCDNNAAIILCKKKLGNTKLSKHI 523
              +L  L+           L   +P+       I + CDN   II       N K S+HI
Sbjct: 1283 EAELTALDTAIVEAEWLRELLMDLPVVEKPVPAILMNCDNQTVIIKVNSSKDNMKSSRHI 1342

Query: 524  KIRQKAIRRLSTHNIVSLLYVKTNDNL 604
            K R K++R+     +++L YV+T  NL
Sbjct: 1343 KRRLKSVRKQKNSGVIALDYVQTARNL 1369


>gb|ABF99156.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1413

 Score = 95.9 bits (237), Expect = 1e-18
 Identities = 66/207 (31%), Positives = 104/207 (50%), Gaps = 14/207 (6%)
 Frame = +2

Query: 26   YSKAIDSLLFLTNRTRPDIAYVVS---RYISNFSGLYWTIIKRVFKYLREKINYVLTYSG 196
            YS+ I SL++L + TRPDI++ VS   R++SN    +W  ++RV +YL+  ++Y + Y+G
Sbjct: 1192 YSQIIGSLMYLASATRPDISFAVSKLSRFVSNPGDDHWQALERVMRYLKGTMSYGIHYTG 1251

Query: 197  YFSVLESLCDTNWISDSNNVNSTYR*SSP*VEVTFLGNLQNKL*KLRALWKLS**L*T*R 376
            Y  VLE   D+NWISD++ + +T    S  V     G +  K  K   L + +       
Sbjct: 1252 YPKVLEGYSDSNWISDADEIKAT----SGYVFTLGGGAVSWKSCKQTILTRST------M 1301

Query: 377  ALKLNGLN-----------LCSSIPMTISINTPIFIQCDNNAAIILCKKKLGNTKLSKHI 523
              +L  L+           L   +P+       I + CDN   II       N K S+HI
Sbjct: 1302 EAELTALDTAIVEAEWLRELLMDLPVVEKPVPAILMNCDNQTVIIKVNSSKDNMKSSRHI 1361

Query: 524  KIRQKAIRRLSTHNIVSLLYVKTNDNL 604
            K R K++R+     +++L YV+T  NL
Sbjct: 1362 KRRLKSVRKQKNSGVIALDYVQTARNL 1388


>gb|ABG66099.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 591

 Score = 95.5 bits (236), Expect = 1e-18
 Identities = 63/207 (30%), Positives = 105/207 (50%), Gaps = 14/207 (6%)
 Frame = +2

Query: 26  YSKAIDSLLFLTNRTRPDIAYVVSR---YISNFSGLYWTIIKRVFKYLREKINYVLTYSG 196
           YS+ I SL++LT+ TRPDI++ VS+   + SN    +W +++RV +YL+  +   L Y+G
Sbjct: 370 YSQIIGSLMYLTSVTRPDISFAVSKLSLFTSNLGDDHWRVLERVMRYLKGTMELGLHYTG 429

Query: 197 YFSVLESLCDTNWISDSNNVNSTYR*SSP*VEVTFLGNLQNKL*KLRALWKLS**L*T*R 376
           Y +VLE   D+NWISD + + +T    S  V     G +  +  K   L + +       
Sbjct: 430 YPAVLEGYSDSNWISDVDEIKAT----SGYVLTLGGGAVSWRFCKQTILTRST------M 479

Query: 377 ALKLNGL-----------NLCSSIPMTISINTPIFIQCDNNAAIILCKKKLGNTKLSKHI 523
            ++L  L           +L   +P+       I + CDN   I+       N K S+H+
Sbjct: 480 EVELTALDTATIEAEWLRDLLMDLPIVEKPVPAILMNCDNQTVIVKVNSSKDNMKSSRHV 539

Query: 524 KIRQKAIRRLSTHNIVSLLYVKTNDNL 604
           K R K++R+L    +++L Y++T  NL
Sbjct: 540 KRRLKSVRKLKNSRVITLDYIQTARNL 566


>gb|AAG13538.1|AC023240_11 putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1408

 Score = 95.5 bits (236), Expect = 2e-18
 Identities = 66/207 (31%), Positives = 104/207 (50%), Gaps = 14/207 (6%)
 Frame = +2

Query: 26   YSKAIDSLLFLTNRTRPDIAYVVS---RYISNFSGLYWTIIKRVFKYLREKINYVLTYSG 196
            YS+ I SL++L + TRPDI++ VS   R++SN    +W  ++RV +YL+  ++Y + Y+G
Sbjct: 1187 YSQIIGSLMYLASATRPDISFAVSKLSRFVSNPGDDHWRALERVMRYLKGTMSYGIHYTG 1246

Query: 197  YFSVLESLCDTNWISDSNNVNSTYR*SSP*VEVTFLGNLQNKL*KLRALWKLS**L*T*R 376
            Y  VLE   D+NWISD++ + +T    S  V     G +  K  K   L + +       
Sbjct: 1247 YPKVLEGYSDSNWISDADEIKAT----SGYVFTLGGGAVSWKSCKQTILTRST------M 1296

Query: 377  ALKLNGLN-----------LCSSIPMTISINTPIFIQCDNNAAIILCKKKLGNTKLSKHI 523
              +L  L+           L   +P+       I + CDN   II       N K S+HI
Sbjct: 1297 EAELTALDTATVEAEWLRELLMDLPVVEKPVPAILMNCDNQIVIIKVNSSKDNMKSSRHI 1356

Query: 524  KIRQKAIRRLSTHNIVSLLYVKTNDNL 604
            K R K++R+     +++L YV+T  NL
Sbjct: 1357 KRRLKSVRKQKNSGVIALDYVQTARNL 1383


>gb|AAP54390.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1479

 Score = 95.5 bits (236), Expect = 2e-18
 Identities = 66/207 (31%), Positives = 104/207 (50%), Gaps = 14/207 (6%)
 Frame = +2

Query: 26   YSKAIDSLLFLTNRTRPDIAYVVS---RYISNFSGLYWTIIKRVFKYLREKINYVLTYSG 196
            YS+ I SL++L + TRPDI++ VS   R++SN    +W  ++RV +YL+  ++Y + Y+G
Sbjct: 1258 YSQIIGSLMYLASATRPDISFAVSKLSRFVSNPGDDHWRALERVMRYLKGTMSYGIHYTG 1317

Query: 197  YFSVLESLCDTNWISDSNNVNSTYR*SSP*VEVTFLGNLQNKL*KLRALWKLS**L*T*R 376
            Y  VLE   D+NWISD++ + +T    S  V     G +  K  K   L + +       
Sbjct: 1318 YPKVLEGYSDSNWISDADEIKAT----SGYVFTLGGGAVSWKSCKQTILTRST------M 1367

Query: 377  ALKLNGLN-----------LCSSIPMTISINTPIFIQCDNNAAIILCKKKLGNTKLSKHI 523
              +L  L+           L   +P+       I + CDN   II       N K S+HI
Sbjct: 1368 EAELTALDTATVEAEWLRELLMDLPVVEKPVPAILMNCDNQIVIIKVNSSKDNMKSSRHI 1427

Query: 524  KIRQKAIRRLSTHNIVSLLYVKTNDNL 604
            K R K++R+     +++L YV+T  NL
Sbjct: 1428 KRRLKSVRKQKNSGVIALDYVQTARNL 1454


>gb|AAK39592.1|AC025296_27 putative retrotransposon polyprotein [Oryza sativa Japonica Group]
          Length = 804

 Score = 95.1 bits (235), Expect = 2e-18
 Identities = 66/204 (32%), Positives = 104/204 (50%), Gaps = 11/204 (5%)
 Frame = +2

Query: 26   YSKAIDSLLFLTNRTRPDIAYVVS---RYISNFSGLYWTIIKRVFKYLREKINYVLTYSG 196
            YS+ I SL++L + TRPDI++ VS   R++SN    +W  ++RV +YL+  ++Y + Y+G
Sbjct: 583  YSQIIGSLMYLASATRPDISFAVSKLSRFVSNPGDDHWQALERVMRYLKGTMSYGIHYTG 642

Query: 197  YFSVLESLCDTNWISDSNNVN--STYR*SSP*VEVTFLGNLQNKL*KLRALWKLS**L*T 370
            Y  VLE   D+NWISD+N +   S Y  +     V++    Q  L +     +L+     
Sbjct: 643  YPKVLEGYSDSNWISDANEIKAISGYAFTLGGGAVSWKSCKQTILTRSTMEAELT----- 697

Query: 371  *RALKLNGL------NLCSSIPMTISINTPIFIQCDNNAAIILCKKKLGNTKLSKHIKIR 532
              AL    +       L   +P+       I + CDN   II       N K S+HIK R
Sbjct: 698  --ALDTATVEAEWLRELLMDLPVVEKPVPAILMNCDNQTVIIKVNSSKDNMKSSRHIKRR 755

Query: 533  QKAIRRLSTHNIVSLLYVKTNDNL 604
             K++R+     +++L YV+T  NL
Sbjct: 756  LKSVRKQKNSGVIALDYVQTARNL 779