BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00049539
         (508 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KHN01991.1| Retrovirus-related Pol polyprotein from transposo...    57   2e-06

>gb|KHN01991.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Glycine soja]
          Length = 1311

 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 43/131 (32%), Positives = 65/131 (49%), Gaps = 3/131 (2%)
 Frame = +1

Query: 124  HISPTTLLRQSVG---HDLIIAKMELMETPPTTVDEKYTPNDELQISDKNTHISFFDMQN 294
            H   +T+L +S     HD II K      PP  V ++ T +  LQ++  +        ++
Sbjct: 692  HPESSTILPKSFNISPHDPIIEK------PPQPVIQETTDHTPLQLTSTDESAFSQRTKH 745

Query: 295  NTRRSLRNKKAPNYLKEYHIELSLRTRQILDHHSCC*TCQHQYSLSSMLSYDRVTPSQ*T 474
              RRS R K AP YL++YH  LS    ++        +   +Y LSS+LSY R++ +   
Sbjct: 746  EPRRSTRPKHAPTYLQDYHHSLSSHDTKV--------STSSRYPLSSVLSYSRLSHTHKH 797

Query: 475  LVTSISTTREP 507
             V SIS+T EP
Sbjct: 798  FVMSISSTVEP 808