BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00054742
         (302 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABV21212.1| Ty1_Copia-element protein [Arabidopsis thaliana]        81   1e-13
gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata sub...    74   1e-11
dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]            74   1e-11
ref|NP_189068.2| RNA-directed DNA polymerase (reverse transcript...    73   2e-11
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]                 71   8e-11

>gb|ABV21212.1| Ty1_Copia-element protein [Arabidopsis thaliana]
          Length = 438

 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 42/99 (42%), Positives = 55/99 (55%), Gaps = 5/99 (5%)
 Frame = +1

Query: 1   PFIDPIVQPIGLWTASSLPFAGRLQLITAVL*GIQCF*LSVLPVPSGMIDEIVALCRFFL 180
           P +  I   +  W   SL FAGRLQL+++V+ GI  F +S   +P G I EI ++C  FL
Sbjct: 52  PLVVKIKAKLNFWAVKSLSFAGRLQLLSSVISGIVVFWMSTFRLPKGCIREIESMCARFL 111

Query: 181 WDNG-----KVLVTWKDFALIKREGGLGLRDMRAWNSAL 282
           W  G     K  V+W    L K EGGLG+R    WN+AL
Sbjct: 112 WSGGTDEHHKAKVSWSTVCLPKAEGGLGVRKFTEWNTAL 150


>gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata subsp. lyrata]
          Length = 441

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 41/96 (42%), Positives = 54/96 (56%), Gaps = 5/96 (5%)
 Frame = +1

Query: 1   PFIDPIVQPIGLWTASSLPFAGRLQLITAVL*GIQCF*LSVLPVPSGMIDEIVALCRFFL 180
           P I+ I + I  WTA  L FAGRLQLI++V+  +  F +S   +P+  I EI  LC  FL
Sbjct: 8   PLIERIRERISCWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPNACIKEIDGLCSAFL 67

Query: 181 W-----DNGKVLVTWKDFALIKREGGLGLRDMRAWN 273
           W     +  K  V+W D  + K EGGLGLR +   N
Sbjct: 68  WSGPELNRKKAKVSWNDVCMPKEEGGLGLRSLTEAN 103


>dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]
          Length = 478

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 41/100 (41%), Positives = 55/100 (55%), Gaps = 5/100 (5%)
 Frame = +1

Query: 1   PFIDPIVQPIGLWTASSLPFAGRLQLITAVL*GIQCF*LSVLPVPSGMIDEIVALCRFFL 180
           P ++ I   IG WTA  L FAGRLQLI++V+  +  F +S   +PS  I EI ++C  FL
Sbjct: 44  PLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFL 103

Query: 181 W-----DNGKVLVTWKDFALIKREGGLGLRDMRAWNSALL 285
           W     +  K  V W D    K EGGLG+R ++  N   L
Sbjct: 104 WSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSL 143


>ref|NP_189068.2| RNA-directed DNA polymerase (reverse transcriptase)-related protein
           [Arabidopsis thaliana] gi|332643359|gb|AEE76880.1|
           RNA-directed DNA polymerase (reverse
           transcriptase)-related protein [Arabidopsis thaliana]
          Length = 746

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 40/96 (41%), Positives = 54/96 (56%), Gaps = 5/96 (5%)
 Frame = +1

Query: 1   PFIDPIVQPIGLWTASSLPFAGRLQLITAVL*GIQCF*LSVLPVPSGMIDEIVALCRFFL 180
           P ++ I   IG WTA  L FAGRLQLI++V+  +  F +S   +PS  I EI ++C  FL
Sbjct: 44  PLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFL 103

Query: 181 W-----DNGKVLVTWKDFALIKREGGLGLRDMRAWN 273
           W     +  K  V W D    K EGGLG+R ++  N
Sbjct: 104 WSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEAN 139


>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
          Length = 740

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
 Frame = +1

Query: 1   PFIDPIVQPIGLWTASSLPFAGRLQLITAVL*GIQCF*LSVLPVPSGMIDEIVALCRFFL 180
           P +D +   I  WTA SL +AGRL LI +V+  +  F +S   +P+G I EI  LC  FL
Sbjct: 361 PLLDKVRSKISSWTARSLSYAGRLALINSVIVSLSNFWMSAYRLPAGCIKEIEKLCSAFL 420

Query: 181 WDN-----GKVLVTWKDFALIKREGGLGLRDM 261
           W        K  +TW     +K+EGGLG++ +
Sbjct: 421 WSGPELNPKKAKITWTSLCKLKQEGGLGIKSL 452