BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00054639
         (256 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD29058.1| putative non-LTR retroelement reverse transcripta...    58   9e-07
emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabid...    57   1e-06
gb|AAF18538.1|AC006551_24 Very similar to retrotransposon revers...    57   2e-06
emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulga...    56   4e-06
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi...    55   6e-06

>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1229

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 29/73 (39%), Positives = 45/73 (61%)
 Frame = -3

Query: 254 LNDIRDNSEK*GGRERLDSSFRQFRSFIDWMNVVQIQHSGSTWTWANNRAGEGFVEEQLD 75
           +N+I DNSEK GG  R   SF  FRSFI    +  +++SG+ ++W   R  + FV ++LD
Sbjct: 35  VNEILDNSEKRGGPPRDQGSFIDFRSFISKNGLWDLKYSGNPFSWRGMRY-DWFVRQRLD 93

Query: 74  RFFGSSEWLHTYP 36
           R   ++ WL ++P
Sbjct: 94  RAMSNNSWLESFP 106


>emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
           gi|7267666|emb|CAB78094.1| RNA-directed DNA
           polymerase-like protein [Arabidopsis thaliana]
          Length = 1274

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 28/74 (37%), Positives = 41/74 (55%)
 Frame = -3

Query: 251 NDIRDNSEK*GGRERLDSSFRQFRSFIDWMNVVQIQHSGSTWTWANNRAGEGFVEEQLDR 72
           NDI DNSEK GG  R +  F  FRSF+    +  I H+G++ +W   R    F++ +LDR
Sbjct: 82  NDILDNSEKQGGPLRWEGFFLAFRSFVSQNGLWDINHTGNSLSWRGTRYSH-FIKSRLDR 140

Query: 71  FFGSSEWLHTYPQA 30
             G+  W   +P +
Sbjct: 141 ALGNCSWSELFPMS 154


>gb|AAF18538.1|AC006551_24 Very similar to retrotransposon reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1231

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 26/72 (36%), Positives = 45/72 (62%)
 Frame = -3

Query: 251 NDIRDNSEK*GGRERLDSSFRQFRSFIDWMNVVQIQHSGSTWTWANNRAGEGFVEEQLDR 72
           N+I  N EK GG +R +S F+ F+   +   +V++  +G+ +TWA  R  + +++ +LDR
Sbjct: 104 NEILHNEEKIGGPKRCESYFKPFKEMHEACGMVELASTGNRFTWAGRRY-DLWIQSRLDR 162

Query: 71  FFGSSEWLHTYP 36
            FG+ EWL  +P
Sbjct: 163 AFGNKEWLKNFP 174


>emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1357

 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 27/79 (34%), Positives = 42/79 (53%)
 Frame = -3

Query: 251 NDIRDNSEK*GGRERLDSSFRQFRSFIDWMNVVQIQHSGSTWTWANNRAGEGFVEEQLDR 72
           N+I    EK GG  R   +   FR+ +D  ++  ++  G   TW   R+ E  + E+LDR
Sbjct: 140 NEILSYDEKEGGASRERRAIVGFRNVMDDCSLGDLRFVGQWHTWERGRSPESRIRERLDR 199

Query: 71  FFGSSEWLHTYPQAVVHHR 15
           F  S  WLH +P+A + H+
Sbjct: 200 FIVSRSWLHLFPEAFIDHQ 218


>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
           (fragment)
          Length = 1365

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 28/74 (37%), Positives = 44/74 (59%)
 Frame = -3

Query: 251 NDIRDNSEK*GGRERLDSSFRQFRSFIDWMNVVQIQHSGSTWTWANNRAGEGFVEEQLDR 72
           NDIR N EK GG  R  SSF+ F   +   ++ ++  +G+++TW  NR  + +V+ +LDR
Sbjct: 137 NDIRSNDEKLGGPRRSPSSFQCFEHMLLNCSMHELGSTGNSFTWGGNR-NDQWVQCKLDR 195

Query: 71  FFGSSEWLHTYPQA 30
            FG+  W   +P A
Sbjct: 196 CFGNPAWFSIFPNA 209