BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00053672
         (371 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD17398.1| putative non-LTR retroelement reverse transcripta...    64   8e-11
dbj|BAF01759.1| putative non-LTR retroelement reverse transcript...    64   9e-11
gb|AAB48348.1| reverse transcriptase, partial [Arabidopsis thali...    62   4e-08
pir||S65817 RNA-directed DNA polymerase (EC 2.7.7.49) (clone B3)...    62   4e-08
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1...    50   7e-08

>gb|AAD17398.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1225

 Score = 63.5 bits (153), Expect(2) = 8e-11
 Identities = 35/91 (38%), Positives = 45/91 (49%)
 Frame = +3

Query: 99  FFYHQFWDNLSNVLLAAASDFMVEMHIPWRIGSTLITLLSKNPAPGTFAEYQPISLCTFR 278
           FFY  +WD     L+    +F        R+  T I L+ K   P   AE++PISLC   
Sbjct: 401 FFYQHYWDLTGPDLIKLVQNFHSTGFFDERLNETNICLIPKTERPRKMAEFRPISLCNVS 460

Query: 279 SKVFSKILSVCLSKLFPRLIYSENVAFLANR 371
            KV SK+LS  L +L P LI     AF+A R
Sbjct: 461 YKVISKVLSSRLKRLLPELISETQSAFVAER 491



 Score = 27.7 bits (60), Expect(2) = 8e-11
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 2   EALLALVSLNELHTIVFSFDPDSASSGDGYPGFF 103
           ++L  ++S  E+   +FS +PD A   DG   FF
Sbjct: 369 KSLTKVISPEEVKRALFSLNPDKAPGPDGMTAFF 402


>dbj|BAF01759.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 400

 Score = 63.5 bits (153), Expect(2) = 9e-11
 Identities = 35/91 (38%), Positives = 45/91 (49%)
 Frame = +3

Query: 99  FFYHQFWDNLSNVLLAAASDFMVEMHIPWRIGSTLITLLSKNPAPGTFAEYQPISLCTFR 278
           FFY  +WD     L+    +F        R+  T I L+ K   P   AE++PISLC   
Sbjct: 35  FFYQHYWDLTGPDLIKLVQNFHSTGFFDERLNETNICLIPKTERPRKMAEFRPISLCNVS 94

Query: 279 SKVFSKILSVCLSKLFPRLIYSENVAFLANR 371
            KV SK+LS  L +L P LI     AF+A R
Sbjct: 95  YKVISKVLSSRLKRLLPELISETQSAFVAER 125



 Score = 27.7 bits (60), Expect(2) = 9e-11
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 2   EALLALVSLNELHTIVFSFDPDSASSGDGYPGFF 103
           ++L  ++S  E+   +FS +PD A   DG   FF
Sbjct: 3   KSLTKVISPEEVKRALFSLNPDKAPGPDGMTAFF 36


>gb|AAB48348.1| reverse transcriptase, partial [Arabidopsis thaliana]
          Length = 199

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 35/90 (38%), Positives = 45/90 (50%)
 Frame = +3

Query: 102 FYHQFWDNLSNVLLAAASDFMVEMHIPWRIGSTLITLLSKNPAPGTFAEYQPISLCTFRS 281
           FY +FWD     L+    +F        R+  T I L+ K   P   AE++PISLC    
Sbjct: 11  FYQRFWDLTGPDLVKVVQNFHSSASFDERLNETNICLIPKIDRPRRMAEFRPISLCNVSY 70

Query: 282 KVFSKILSVCLSKLFPRLIYSENVAFLANR 371
           KV SK+LS  L K+ P LI     AF+A R
Sbjct: 71  KVISKVLSSRLKKILPDLISETQSAFVAGR 100


>pir||S65817 RNA-directed DNA polymerase (EC 2.7.7.49) (clone B3) - Arabidopsis
           thaliana retrotransposon Ta25 (fragment)
          Length = 184

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 35/90 (38%), Positives = 45/90 (50%)
 Frame = +3

Query: 102 FYHQFWDNLSNVLLAAASDFMVEMHIPWRIGSTLITLLSKNPAPGTFAEYQPISLCTFRS 281
           FY +FWD     L+    +F        R+  T I L+ K   P   AE++PISLC    
Sbjct: 5   FYQRFWDLTGPDLVKVVQNFHSSASFDERLNETNICLIPKIDRPRRMAEFRPISLCNVSY 64

Query: 282 KVFSKILSVCLSKLFPRLIYSENVAFLANR 371
           KV SK+LS  L K+ P LI     AF+A R
Sbjct: 65  KVISKVLSSRLKKILPDLISETQSAFVAGR 94


>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) -
           Arabidopsis thaliana retrotransposon Ta11-1
           gi|976278|gb|AAA75254.1| reverse transcriptase
           [Arabidopsis thaliana]
          Length = 1333

 Score = 49.7 bits (117), Expect(2) = 7e-08
 Identities = 27/92 (29%), Positives = 43/92 (46%)
 Frame = +3

Query: 96  GFFYHQFWDNLSNVLLAAASDFMVEMHIPWRIGSTLITLLSKNPAPGTFAEYQPISLCTF 275
           GFF+ ++W  +   +     +F +  + P     T + LL K   P    + +PISLC+ 
Sbjct: 455 GFFFQKYWSIICLQVTKEIQNFFLLGYFPKSWNFTHLCLLPKKKKPDKMTDLRPISLCSV 514

Query: 276 RSKVFSKILSVCLSKLFPRLIYSENVAFLANR 371
             K+ SKI+   L    P L+     AF+A R
Sbjct: 515 LYKIISKIMVRRLQPFLPDLVSPNQSAFVAER 546



 Score = 31.6 bits (70), Expect(2) = 7e-08
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +2

Query: 8   LLALVSLNELHTIVFSFDPDSASSGDGYPGFF 103
           L+A VS NE+   VF+    SA   DG+ GFF
Sbjct: 426 LIAAVSKNEIREAVFAIRSSSAPGVDGFTGFF 457