BLASTX nr result
ID: Cephaelis21_contig00051202
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cephaelis21_contig00051202
(728 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptas... 99 1e-26
gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana] 91 9e-25
sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H pr... 91 9e-25
gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis ... 72 3e-19
gb|AAD22368.1| putative non-LTR retroelement reverse transcripta... 63 1e-17
>gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptase); Polynucleotidyl
transferase, Ribonuclease H fold [Medicago truncatula]
Length = 729
Score = 99.0 bits (245), Expect(2) = 1e-26
Identities = 62/201 (30%), Positives = 89/201 (44%), Gaps = 3/201 (1%)
Frame = -1
Query: 728 WGLSNDGNFSIKSVMDFLXXXXXXXXXXDSSWKLVWAWKGPQKLRAFLWLVLHGRLPTAE 549
WG +N F+++S + WK +W WKGP +++ F+WL HGR+ T
Sbjct: 436 WGGTNTLKFTVQSAYNL---QQENPFAVGGDWKTLWNWKGPHRIQTFIWLAAHGRILTNY 492
Query: 548 VCFGRKVIQSSRYQRCGVEPENVIHVLRDCCFAKGVWMQLVHQNHWSAFFSQETNDCVRQ 369
V S C E E VIHVLRDC + VW++L+ N+ + FFS + + V
Sbjct: 493 RRSKWGVGISPTCPCCAREDETVIHVLRDCVHSTQVWLRLIPHNYITNFFSFDCREWVFN 552
Query: 368 NLVDDCWRAPGIN---LPWRIILVASCWSLWLWRNNFIFGDPEEPLGQPLKTIMYQASEI 198
NL GI W+ + +CW LW WRN IF + P I EI
Sbjct: 553 NL-----NKKGIGDNPATWQTTFMTTCWYLWNWRNKSIFEIGFQRPSNPTLVIQKFTREI 607
Query: 197 LVSSATLAKVPGQNKQKANGW 135
++ + K Q + GW
Sbjct: 608 EDNTKLVHKSSHQKETIYIGW 628
Score = 47.0 bits (110), Expect(2) = 1e-26
Identities = 18/35 (51%), Positives = 25/35 (71%)
Frame = -3
Query: 111 GWVKVNCDGSVDRDRGIAAIGGVLRDTNGNWISGF 7
GWVK+NCDG+ +A GG+LRD++G WI G+
Sbjct: 634 GWVKLNCDGAWKGSGTLAGCGGLLRDSDGRWIKGY 668
>gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana]
Length = 1055
Score = 90.5 bits (223), Expect(2) = 9e-25
Identities = 50/158 (31%), Positives = 78/158 (49%)
Frame = -1
Query: 728 WGLSNDGNFSIKSVMDFLXXXXXXXXXXDSSWKLVWAWKGPQKLRAFLWLVLHGRLPTAE 549
W S DG FS++S + L S + +W + P++++ FLWLV + + T E
Sbjct: 366 WKFSQDGQFSVRSAYEMLTVDEVPRPNMASFFNCLWKVRVPERVKTFLWLVGNQAVMTEE 425
Query: 548 VCFGRKVIQSSRYQRCGVEPENVIHVLRDCCFAKGVWMQLVHQNHWSAFFSQETNDCVRQ 369
R + S+ Q C E+++HVLRDC G+W+++V Q FFS+ + +
Sbjct: 426 ERHRRHLSASNVCQVCKGGVESMLHVLRDCPAQLGIWVRVVPQRRQQGFFSKSLFEWLYD 485
Query: 368 NLVDDCWRAPGINLPWRIILVASCWSLWLWRNNFIFGD 255
NL D R+ ++PW I W W WR IFG+
Sbjct: 486 NLGD---RSGCEDIPWSTIFAVIIWWGWKWRCGNIFGE 520
Score = 49.3 bits (116), Expect(2) = 9e-25
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Frame = -3
Query: 141 RLERMVPQEP---GWVKVNCDGSVDRDRGIAAIGGVLRDTNGNWISGFS 4
R+ERM+ GWVKVN DG+ + G+A+ GGVLRD G W GFS
Sbjct: 554 RVERMIGWVSPCVGWVKVNTDGASRGNPGLASAGGVLRDCTGAWCGGFS 602
>sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H protein At1g65750
Length = 620
Score = 90.5 bits (223), Expect(2) = 9e-25
Identities = 50/158 (31%), Positives = 78/158 (49%)
Frame = -1
Query: 728 WGLSNDGNFSIKSVMDFLXXXXXXXXXXDSSWKLVWAWKGPQKLRAFLWLVLHGRLPTAE 549
W S DG FS++S + L S + +W + P++++ FLWLV + + T E
Sbjct: 257 WKFSQDGQFSVRSAYEMLTVDEVPRPNMASFFNCLWKVRVPERVKTFLWLVGNQAVMTEE 316
Query: 548 VCFGRKVIQSSRYQRCGVEPENVIHVLRDCCFAKGVWMQLVHQNHWSAFFSQETNDCVRQ 369
R + S+ Q C E+++HVLRDC G+W+++V Q FFS+ + +
Sbjct: 317 ERHRRHLSASNVCQVCKGGVESMLHVLRDCPAQLGIWVRVVPQRRQQGFFSKSLFEWLYD 376
Query: 368 NLVDDCWRAPGINLPWRIILVASCWSLWLWRNNFIFGD 255
NL D R+ ++PW I W W WR IFG+
Sbjct: 377 NLGD---RSGCEDIPWSTIFAVIIWWGWKWRCGNIFGE 411
Score = 49.3 bits (116), Expect(2) = 9e-25
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Frame = -3
Query: 141 RLERMVPQEP---GWVKVNCDGSVDRDRGIAAIGGVLRDTNGNWISGFS 4
R+ERM+ GWVKVN DG+ + G+A+ GGVLRD G W GFS
Sbjct: 445 RVERMIGWVSPCVGWVKVNTDGASRGNPGLASAGGVLRDCTGAWCGGFS 493
>gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis cebennensis]
Length = 799
Score = 72.0 bits (175), Expect(2) = 3e-19
Identities = 46/157 (29%), Positives = 69/157 (43%)
Frame = -1
Query: 728 WGLSNDGNFSIKSVMDFLXXXXXXXXXXDSSWKLVWAWKGPQKLRAFLWLVLHGRLPTAE 549
WG S DG F++KS L + VW P++++ FLWL +H + T
Sbjct: 436 WGESLDGKFTVKSAYSSLMKDNTPRSDLSRMYDRVWKVIAPERVKIFLWLGVHQVIMTNM 495
Query: 548 VCFGRKVIQSSRYQRCGVEPENVIHVLRDCCFAKGVWMQLVHQNHWSAFFSQETNDCVRQ 369
R + + Q C E +IH+LRDC G+W +++ + FF+Q + V
Sbjct: 496 ERQRRHLSDTGICQVCKGGDETIIHILRDCPAMYGIWTRIIPRRKRGTFFTQTLLEWVYD 555
Query: 368 NLVDDCWRAPGINLPWRIILVASCWSLWLWRNNFIFG 258
NL D + G PW + W W WR +FG
Sbjct: 556 NL-GDSGKVDG--CPWSCVR----WG-WKWRCGNVFG 584
Score = 49.3 bits (116), Expect(2) = 3e-19
Identities = 24/50 (48%), Positives = 34/50 (68%), Gaps = 4/50 (8%)
Frame = -3
Query: 141 RLERMV----PQEPGWVKVNCDGSVDRDRGIAAIGGVLRDTNGNWISGFS 4
R+ERMV P E GW+K+N DG+ + G+A GG+LR +G+WI GF+
Sbjct: 619 RIERMVSWVKPAE-GWLKLNTDGASKGNPGLATAGGILRQQDGSWIGGFA 667
>gb|AAD22368.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 321
Score = 63.2 bits (152), Expect(2) = 1e-17
Identities = 42/142 (29%), Positives = 67/142 (47%)
Frame = -1
Query: 608 PQKLRAFLWLVLHGRLPTAEVCFGRKVIQSSRYQRCGVEPENVIHVLRDCCFAKGVWMQL 429
P+++R FLWLV+ + T + R + + Q C E ++HVLRDC G+W +L
Sbjct: 3 PERVRVFLWLVVQQVIITNVERYRRHLSDTRVCQICQGGEETILHVLRDCPAMAGIWSRL 62
Query: 428 VHQNHWSAFFSQETNDCVRQNLVDDCWRAPGINLPWRIILVASCWSLWLWRNNFIFGDPE 249
V ++ FF+ + + +NL R G W + V + W W WR IFG
Sbjct: 63 VPRDQIRQFFTASLLEWIYKNL-----RERG---SWPTVFVMAVWWGWKWRCGNIFGG-N 113
Query: 248 EPLGQPLKTIMYQASEILVSSA 183
+K I A E+ +++A
Sbjct: 114 GKCRDRVKFIKDLAEEVAIANA 135
Score = 52.8 bits (125), Expect(2) = 1e-17
Identities = 25/46 (54%), Positives = 29/46 (63%)
Frame = -3
Query: 141 RLERMVPQEPGWVKVNCDGSVDRDRGIAAIGGVLRDTNGNWISGFS 4
RL V E GWVK+N DG+ + G A GGVLRD NG WI GF+
Sbjct: 149 RLVSWVSPEDGWVKLNTDGASRGNPGFATAGGVLRDHNGAWIGGFA 194