BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00051081
         (439 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAB48350.1| reverse transcriptase, partial [Arabidopsis thali...   116   2e-24
pir||S65815 RNA-directed DNA polymerase (EC 2.7.7.49) (clone NIN...   116   2e-24
emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga...   116   2e-24
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta...   115   3e-24
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ...   113   2e-23

>gb|AAB48350.1| reverse transcriptase, partial [Arabidopsis thaliana]
          Length = 198

 Score =  116 bits (291), Expect = 2e-24
 Identities = 55/115 (47%), Positives = 78/115 (67%)
 Frame = +1

Query: 28  FMQDVLILDELNNTLLFSIPKIDKPESLALFRPISLCNVSYKVLTKIIASRMKNQMPKLV 207
           F +D ++ ++ N+ L+  IPK+ KPE +  FR ISLCNV +K +TK +  RMK  M KL+
Sbjct: 30  FFRDGVLPEKTNDVLVALIPKVLKPEKITQFRAISLCNVLFKAITKTMVGRMKGVMQKLI 89

Query: 208 GLNLSSFIPRKHITNNIVIFQ*VIHSMNYKKGKIRWIAIKIDLEKVYDRLRWGFI 372
           G   SSFIP +  T+NIV+ Q  +H M  KKG + W+ +K+DLEK YDR+RW F+
Sbjct: 90  GPAQSSFIPGRLSTDNIVVVQEAVHPMRKKKGVMGWMLLKLDLEKAYDRIRWDFL 144


>pir||S65815 RNA-directed DNA polymerase (EC 2.7.7.49) (clone NING13) -
           Arabidopsis thaliana retrotransposon Ta28 (fragment)
          Length = 183

 Score =  116 bits (291), Expect = 2e-24
 Identities = 55/115 (47%), Positives = 78/115 (67%)
 Frame = +1

Query: 28  FMQDVLILDELNNTLLFSIPKIDKPESLALFRPISLCNVSYKVLTKIIASRMKNQMPKLV 207
           F +D ++ ++ N+ L+  IPK+ KPE +  FR ISLCNV +K +TK +  RMK  M KL+
Sbjct: 24  FFRDGVLPEKTNDVLVALIPKVLKPEKITQFRAISLCNVLFKAITKTMVGRMKGVMQKLI 83

Query: 208 GLNLSSFIPRKHITNNIVIFQ*VIHSMNYKKGKIRWIAIKIDLEKVYDRLRWGFI 372
           G   SSFIP +  T+NIV+ Q  +H M  KKG + W+ +K+DLEK YDR+RW F+
Sbjct: 84  GPAQSSFIPGRLSTDNIVVVQEAVHPMRKKKGVMGWMLLKLDLEKAYDRIRWDFL 138


>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1378

 Score =  116 bits (290), Expect = 2e-24
 Identities = 53/124 (42%), Positives = 79/124 (63%)
 Frame = +1

Query: 1   PTIKHMAHRFMQDVLILDELNNTLLFSIPKIDKPESLALFRPISLCNVSYKVLTKIIASR 180
           P + H+    +      +  N+T +  IPK+D P+    FRPI LCN+ YK++TK+I +R
Sbjct: 472 PNVMHLVSEILSGRDFPEGFNDTFIVLIPKMDIPQLAKHFRPIGLCNIVYKIVTKVIINR 531

Query: 181 MKNQMPKLVGLNLSSFIPRKHITNNIVIFQ*VIHSMNYKKGKIRWIAIKIDLEKVYDRLR 360
           +K  +P L+     SF+P + IT+N++I Q + HSM  K+GK  ++A+KID EK YDRLR
Sbjct: 532 LKPILPSLISPTQCSFVPNRQITDNVIIVQEMFHSMRNKQGKKGFMAVKIDFEKAYDRLR 591

Query: 361 WGFI 372
           W FI
Sbjct: 592 WTFI 595


>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1231

 Score =  115 bits (289), Expect = 3e-24
 Identities = 53/124 (42%), Positives = 82/124 (66%)
 Frame = +1

Query: 1   PTIKHMAHRFMQDVLILDELNNTLLFSIPKIDKPESLALFRPISLCNVSYKVLTKIIASR 180
           P++      F +  ++    N+ LL  I K+ KPE +  FRP+SLCNV +K++TK++ +R
Sbjct: 329 PSVTRFVLEFFETGVLPASTNDALLVLIAKVAKPERIQQFRPVSLCNVLFKIITKMMVTR 388

Query: 181 MKNQMPKLVGLNLSSFIPRKHITNNIVIFQ*VIHSMNYKKGKIRWIAIKIDLEKVYDRLR 360
           +KN + KL+G   +SFIP +   +NIV+ Q  +HSM  KKG+  W+ +K+DLEK YDR+R
Sbjct: 389 LKNVISKLIGPAQASFIPGRLSIDNIVLVQEAVHSMRRKKGRKGWMLLKLDLEKAYDRVR 448

Query: 361 WGFI 372
           W F+
Sbjct: 449 WDFL 452


>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
           gi|7268307|emb|CAB78601.1| reverse transcriptase like
           protein [Arabidopsis thaliana]
          Length = 929

 Score =  113 bits (282), Expect = 2e-23
 Identities = 51/123 (41%), Positives = 80/123 (65%)
 Frame = +1

Query: 4   TIKHMAHRFMQDVLILDELNNTLLFSIPKIDKPESLALFRPISLCNVSYKVLTKIIASRM 183
           ++      F +  ++    N+ LL  + K+ KPE +  FRP+SLCNV +K++TK++  R+
Sbjct: 282 SVSKFVMEFFESGVLPKSTNDVLLVLLAKVAKPERITQFRPVSLCNVLFKIITKMMVIRL 341

Query: 184 KNQMPKLVGLNLSSFIPRKHITNNIVIFQ*VIHSMNYKKGKIRWIAIKIDLEKVYDRLRW 363
           KN + KL+G   +SFIP +   +NIV+ Q  +HSM  KKG+  W+ +K+DLEK YDR+RW
Sbjct: 342 KNVISKLIGPAQASFIPGRLSFDNIVVVQEAVHSMRRKKGRKGWMLLKLDLEKAYDRIRW 401

Query: 364 GFI 372
            F+
Sbjct: 402 DFL 404