BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00048385
         (415 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga...   144   7e-33
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ...   139   2e-31
gb|AAB48350.1| reverse transcriptase, partial [Arabidopsis thali...   137   1e-30
pir||S65815 RNA-directed DNA polymerase (EC 2.7.7.49) (clone NIN...   137   1e-30
gb|AAD37021.1| putative non-LTR retrolelement reverse transcript...   135   4e-30

>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1378

 Score =  144 bits (363), Expect = 7e-33
 Identities = 65/133 (48%), Positives = 91/133 (68%)
 Frame = -3

Query: 401 GHKLEAGMNSTLIVLIPKCKEPEKFSHYRPINLCPVPYKIVTKTIVNRMRHIMNKLVALN 222
           G     G N T IVLIPK   P+   H+RPI LC + YKIVTK I+NR++ I+  L++  
Sbjct: 484 GRDFPEGFNDTFIVLIPKMDIPQLAKHFRPIGLCNIVYKIVTKVIINRLKPILPSLISPT 543

Query: 221 QTSFIPSRSITDNIVITQEIIHSMRIAKGETGWMAIKVDLEKAYDHLRWGFILDTLEDAG 42
           Q SF+P+R ITDN++I QE+ HSMR  +G+ G+MA+K+D EKAYD LRW FI ++L +  
Sbjct: 544 QCSFVPNRQITDNVIIVQEMFHSMRNKQGKKGFMAVKIDFEKAYDRLRWTFIRESLMELR 603

Query: 41  FPDNINKVIMECV 3
            P ++  ++M CV
Sbjct: 604 IPQHLVDIVMNCV 616


>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
           gi|7268307|emb|CAB78601.1| reverse transcriptase like
           protein [Arabidopsis thaliana]
          Length = 929

 Score =  139 bits (350), Expect = 2e-31
 Identities = 65/135 (48%), Positives = 92/135 (68%)
 Frame = -3

Query: 407 FQGHKLEAGMNSTLIVLIPKCKEPEKFSHYRPINLCPVPYKIVTKTIVNRMRHIMNKLVA 228
           F+   L    N  L+VL+ K  +PE+ + +RP++LC V +KI+TK +V R++++++KL+ 
Sbjct: 291 FESGVLPKSTNDVLLVLLAKVAKPERITQFRPVSLCNVLFKIITKMMVIRLKNVISKLIG 350

Query: 227 LNQTSFIPSRSITDNIVITQEIIHSMRIAKGETGWMAIKVDLEKAYDHLRWGFILDTLED 48
             Q SFIP R   DNIV+ QE +HSMR  KG  GWM +K+DLEKAYD +RW F+ +TLE 
Sbjct: 351 PAQASFIPGRLSFDNIVVVQEAVHSMRRKKGRKGWMLLKLDLEKAYDRIRWDFLAETLEA 410

Query: 47  AGFPDNINKVIMECV 3
           AG  +   K IMECV
Sbjct: 411 AGLSEGWIKRIMECV 425


>gb|AAB48350.1| reverse transcriptase, partial [Arabidopsis thaliana]
          Length = 198

 Score =  137 bits (344), Expect = 1e-30
 Identities = 68/135 (50%), Positives = 88/135 (65%)
 Frame = -3

Query: 407 FQGHKLEAGMNSTLIVLIPKCKEPEKFSHYRPINLCPVPYKIVTKTIVNRMRHIMNKLVA 228
           F+   L    N  L+ LIPK  +PEK + +R I+LC V +K +TKT+V RM+ +M KL+ 
Sbjct: 31  FRDGVLPEKTNDVLVALIPKVLKPEKITQFRAISLCNVLFKAITKTMVGRMKGVMQKLIG 90

Query: 227 LNQTSFIPSRSITDNIVITQEIIHSMRIAKGETGWMAIKVDLEKAYDHLRWGFILDTLED 48
             Q+SFIP R  TDNIV+ QE +H MR  KG  GWM +K+DLEKAYD +RW F+ DTL  
Sbjct: 91  PAQSSFIPGRLSTDNIVVVQEAVHPMRKKKGVMGWMLLKLDLEKAYDRIRWDFLEDTLVA 150

Query: 47  AGFPDNINKVIMECV 3
           AGF       IM+CV
Sbjct: 151 AGFSAQWVTWIMQCV 165


>pir||S65815 RNA-directed DNA polymerase (EC 2.7.7.49) (clone NING13) -
           Arabidopsis thaliana retrotransposon Ta28 (fragment)
          Length = 183

 Score =  137 bits (344), Expect = 1e-30
 Identities = 68/135 (50%), Positives = 88/135 (65%)
 Frame = -3

Query: 407 FQGHKLEAGMNSTLIVLIPKCKEPEKFSHYRPINLCPVPYKIVTKTIVNRMRHIMNKLVA 228
           F+   L    N  L+ LIPK  +PEK + +R I+LC V +K +TKT+V RM+ +M KL+ 
Sbjct: 25  FRDGVLPEKTNDVLVALIPKVLKPEKITQFRAISLCNVLFKAITKTMVGRMKGVMQKLIG 84

Query: 227 LNQTSFIPSRSITDNIVITQEIIHSMRIAKGETGWMAIKVDLEKAYDHLRWGFILDTLED 48
             Q+SFIP R  TDNIV+ QE +H MR  KG  GWM +K+DLEKAYD +RW F+ DTL  
Sbjct: 85  PAQSSFIPGRLSTDNIVVVQEAVHPMRKKKGVMGWMLLKLDLEKAYDRIRWDFLEDTLVA 144

Query: 47  AGFPDNINKVIMECV 3
           AGF       IM+CV
Sbjct: 145 AGFSAQWVTWIMQCV 159


>gb|AAD37021.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 732

 Score =  135 bits (339), Expect = 4e-30
 Identities = 65/135 (48%), Positives = 88/135 (65%)
 Frame = -3

Query: 407 FQGHKLEAGMNSTLIVLIPKCKEPEKFSHYRPINLCPVPYKIVTKTIVNRMRHIMNKLVA 228
           F   KL  G N  ++VLI K  +PE+ + +RPI+LC V +K +TKT+V R++ +++KL+ 
Sbjct: 36  FASGKLPEGTNDAIVVLIAKVLKPERITQFRPISLCNVLFKTITKTLVMRLKRVISKLIR 95

Query: 227 LNQTSFIPSRSITDNIVITQEIIHSMRIAKGETGWMAIKVDLEKAYDHLRWGFILDTLED 48
             Q SFI  R   DNIVI QE +HSMR  KG  GWM +K+DLEKAYD +RW F+ DTL  
Sbjct: 96  PAQASFISGRLAADNIVIMQEAVHSMRRKKGRKGWMLLKLDLEKAYDRIRWEFLEDTLRA 155

Query: 47  AGFPDNINKVIMECV 3
              P+     IM+CV
Sbjct: 156 VRLPEKWIVWIMQCV 170