BLASTX nr result

ID: Cephaelis21_contig00048333 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00048333
         (226 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004160739.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin...    94   1e-17
ref|XP_004138388.1| PREDICTED: E3 ubiquitin-protein ligase SHPRH...    94   1e-17
gb|AFU82534.1| DNA-dependent ATPase, partial [Artemisia tridentata]    91   1e-16
ref|XP_002329202.1| chromatin remodeling complex subunit [Populu...    89   4e-16
ref|XP_002520888.1| snf2 histone linker phd ring helicase, putat...    89   5e-16

>ref|XP_004160739.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase
           SHPRH-like [Cucumis sativus]
          Length = 1520

 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 46/68 (67%), Positives = 50/68 (73%)
 Frame = -3

Query: 218 DQRPASRKQARFDVGGFYEAIRPSKEEPMLDVHLPELLPKLRPYQRRAAYWMIQREKGAS 39
           D    SRK A FD  GFY+AI+PSK+EPMLD  +P LLPKLRPYQRRAAYWMIQREKG S
Sbjct: 252 DDTSNSRKHANFDTIGFYDAIKPSKDEPMLDEDIPNLLPKLRPYQRRAAYWMIQREKGFS 311

Query: 38  TCSASERN 15
             S    N
Sbjct: 312 GNSGLGEN 319


>ref|XP_004138388.1| PREDICTED: E3 ubiquitin-protein ligase SHPRH-like [Cucumis sativus]
          Length = 1520

 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 46/68 (67%), Positives = 50/68 (73%)
 Frame = -3

Query: 218 DQRPASRKQARFDVGGFYEAIRPSKEEPMLDVHLPELLPKLRPYQRRAAYWMIQREKGAS 39
           D    SRK A FD  GFY+AI+PSK+EPMLD  +P LLPKLRPYQRRAAYWMIQREKG S
Sbjct: 252 DDTSNSRKHANFDTIGFYDAIKPSKDEPMLDEDIPNLLPKLRPYQRRAAYWMIQREKGFS 311

Query: 38  TCSASERN 15
             S    N
Sbjct: 312 GNSGLGEN 319


>gb|AFU82534.1| DNA-dependent ATPase, partial [Artemisia tridentata]
          Length = 163

 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 42/72 (58%), Positives = 58/72 (80%), Gaps = 1/72 (1%)
 Frame = -3

Query: 224 EEDQRPASRKQARFDVGGFYEAIRPSKEEPMLDVHLPELLPKLRPYQRRAAYWMIQREKG 45
           ++++ P  RK+ARFDV GFYEAI+PSK++ ML   +P+LLP+LRPYQ+RAA+WM+QREKG
Sbjct: 92  KDEESPDCRKRARFDVSGFYEAIKPSKDKQMLIDDMPDLLPELRPYQKRAAFWMVQREKG 151

Query: 44  A-STCSASERNQ 12
           A    S S+ +Q
Sbjct: 152 ALEHLSGSQHSQ 163


>ref|XP_002329202.1| chromatin remodeling complex subunit [Populus trichocarpa]
           gi|222870983|gb|EEF08114.1| chromatin remodeling complex
           subunit [Populus trichocarpa]
          Length = 1320

 Score = 89.0 bits (219), Expect = 4e-16
 Identities = 43/69 (62%), Positives = 54/69 (78%)
 Frame = -3

Query: 218 DQRPASRKQARFDVGGFYEAIRPSKEEPMLDVHLPELLPKLRPYQRRAAYWMIQREKGAS 39
           D    S K+A+FDV G YEAI+PSK +PML+  LP+LLP LRPYQRRAA+WM+Q+EKG S
Sbjct: 255 DDTSNSGKRAQFDVAGLYEAIKPSKSDPMLEDDLPDLLPTLRPYQRRAAHWMVQQEKGES 314

Query: 38  TCSASERNQ 12
           + S  ER+Q
Sbjct: 315 S-SVKERSQ 322


>ref|XP_002520888.1| snf2 histone linker phd ring helicase, putative [Ricinus communis]
           gi|223540019|gb|EEF41597.1| snf2 histone linker phd ring
           helicase, putative [Ricinus communis]
          Length = 1588

 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 44/65 (67%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
 Frame = -3

Query: 203 SRKQARFDVGGFYEAIRPSKEEPMLDVHLPELLPKLRPYQRRAAYWMIQREKGASTCS-A 27
           SRK+ RFDV GFYEAI+PSK  P+L+  LP+LLP LRPYQRRAAYWM+Q+EKG S  S  
Sbjct: 251 SRKRPRFDVAGFYEAIKPSKSSPILNDDLPDLLPVLRPYQRRAAYWMLQQEKGHSRDSIE 310

Query: 26  SERNQ 12
            ER+Q
Sbjct: 311 KERSQ 315


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