BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00048156
         (491 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptas...    94   2e-17
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    89   3e-16
gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptas...    86   2e-15
gb|ABD96948.1| hypothetical protein [Cleome spinosa]                   84   2e-14
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,...    83   2e-14

>gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
           [Medicago truncatula]
          Length = 1296

 Score = 93.6 bits (231), Expect = 2e-17
 Identities = 53/128 (41%), Positives = 75/128 (58%)
 Frame = -3

Query: 453 LVLKLYMMKAFDRVFWPFLRSLLLRFGFHQSFVALIMNNLSSAWLSILLNGHSASFFKFF 274
           +  KL + KAFD V W FL S LL FGF    V LIM+ +SSA  S+L NG+    FK  
Sbjct: 573 VAFKLDLEKAFDNVNWDFLNSCLLDFGFPDIIVKLIMHCVSSANYSLLWNGNKMPPFKPT 632

Query: 273 PGLKQGDPLSPLLFVCSLRLLAGD*RAWFRLGICSPFVSVSDAPVVTYLCFADDLVIFTR 94
            GL+QGDPLSP LF+  +  L+   +     G   P   ++D P +++L FADD+++FT+
Sbjct: 633 HGLRQGDPLSPYLFILCMEKLSVAIQDAVLQGSWEPIHIINDGPQISHLLFADDVLLFTK 692

Query: 93  GLRRSLRY 70
                L++
Sbjct: 693 AKSSQLQF 700


>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
            Endonuclease/exonuclease/phosphatase [Medicago
            truncatula]
          Length = 1246

 Score = 89.4 bits (220), Expect = 3e-16
 Identities = 58/163 (35%), Positives = 84/163 (51%), Gaps = 13/163 (7%)
 Frame = -3

Query: 453  LVLKLYMMKAFDRVFWPFLRSLLLRFGFHQSFVALIMNNLSSAWLSILLNGHSASFFKFF 274
            + LK+ + KAFD + W FL ++L RFGF + FV  I+  L SA LS+L+NG +  FF   
Sbjct: 583  VALKVDIAKAFDTLDWNFLLAVLQRFGFDEKFVHWILVILQSARLSVLVNGKAVGFFTCS 642

Query: 273  PGLKQGDPLSPLLFVCSLRLLAGD*RAWFRLGICSPFVSVSDAPVVTYLCFADDLVIFTR 94
             G++QGDPLSPLLF     +L+         G   P          T++ +ADD++IF  
Sbjct: 643  HGVRQGDPLSPLLFCLVEEVLSRALSMAATDGQLIPMSYCRGVSFPTHILYADDVLIFCT 702

Query: 93   GLRRSLRY-------------WHFWRTMSRLFVSVLTGTRVAL 4
            G +R++R                     SR F S +TG+RV +
Sbjct: 703  GTKRNIRRLIKIFSQYSEVSGQLINNAKSRFFTSAMTGSRVQM 745


>gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
           [Medicago truncatula]
          Length = 869

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 49/128 (38%), Positives = 72/128 (56%)
 Frame = -3

Query: 453 LVLKLYMMKAFDRVFWPFLRSLLLRFGFHQSFVALIMNNLSSAWLSILLNGHSASFFKFF 274
           +  KL + KAFD V W FLRS L  FGF    + LIM+ ++S+  S+L NG+     K  
Sbjct: 133 VAFKLDLEKAFDNVNWEFLRSCLQDFGFPDDTIKLIMHCVTSSTFSVLWNGNKWPPIKPT 192

Query: 273 PGLKQGDPLSPLLFVCSLRLLAGD*RAWFRLGICSPFVSVSDAPVVTYLCFADDLVIFTR 94
            GL+QGDPLSP LF+  +  L+         G   P    + +P +++L FADD+++FT+
Sbjct: 193 HGLRQGDPLSPYLFIICMEKLSLAINKAVHEGEWEPIRMSASSPPLSHLLFADDVLLFTK 252

Query: 93  GLRRSLRY 70
                LR+
Sbjct: 253 AKNSQLRF 260


>gb|ABD96948.1| hypothetical protein [Cleome spinosa]
          Length = 539

 Score = 83.6 bits (205), Expect = 2e-14
 Identities = 48/130 (36%), Positives = 74/130 (56%), Gaps = 5/130 (3%)
 Frame = -3

Query: 450 VLKLYMMKAFDRVFWPFLRSLLLRFGFHQSFVALIMNNLSSAWLSILLNGHSASFFKFFP 271
           +LK+ + KAFD V W F+  ++      ++FV  +   + +   S+ +NG  A +FK   
Sbjct: 42  MLKIDLRKAFDTVSWEFITKIMQALNLPRTFVTWVKVCMETPKFSVSINGELAGYFKGRR 101

Query: 270 GLKQGDPLSPLLFVCSLRLLAGD*RAWFRLGICSPFVSVS-----DAPVVTYLCFADDLV 106
           GL+QGDPLSP LF+ S+ +L+        L  C+    +S      +PV+T+L FADD++
Sbjct: 102 GLRQGDPLSPYLFIMSMEVLSR------MLDRCAAESRLSLHPKCHSPVITHLAFADDIM 155

Query: 105 IFTRGLRRSL 76
           IFT G  RSL
Sbjct: 156 IFTSGETRSL 165


>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
           [Arabidopsis thaliana]
          Length = 1164

 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 48/125 (38%), Positives = 72/125 (57%)
 Frame = -3

Query: 450 VLKLYMMKAFDRVFWPFLRSLLLRFGFHQSFVALIMNNLSSAWLSILLNGHSASFFKFFP 271
           +LK+ + KAFD V W F+ S L      + F   I+  LS+A  S++LNGHSA  F    
Sbjct: 486 MLKVDLRKAFDSVRWDFIVSALRALNVPEKFTCWILECLSTASFSVILNGHSAGHFWSSK 545

Query: 270 GLKQGDPLSPLLFVCSLRLLAGD*RAWFRLGICSPFVSVSDAPVVTYLCFADDLVIFTRG 91
           GL+QGDP+SP LFV ++ + +G  ++ +  G  +     S    +++L FADD++IF  G
Sbjct: 546 GLRQGDPMSPYLFVLAMEVFSGLLQSRYTSGYIAYHPKTSQLE-ISHLMFADDVMIFFDG 604

Query: 90  LRRSL 76
              SL
Sbjct: 605 KSSSL 609