BLASTX nr result
ID: Cephaelis21_contig00047401
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cephaelis21_contig00047401
(663 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 246 4e-63
emb|CAB40051.1| putative protein [Arabidopsis thaliana] gi|72677... 246 4e-63
emb|CAB75484.1| putative protein [Arabidopsis thaliana] 242 5e-62
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 241 7e-62
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 241 7e-62
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana]
Length = 1662
Score = 246 bits (627), Expect = 4e-63
Identities = 108/220 (49%), Positives = 157/220 (71%)
Frame = +1
Query: 4 KAPGPDGMSPLFFQKCWHLVGPDICTAVKDFFHSSKMLKSINHTLVSLIPKVKNPSCIAH 183
KAPGPDG++ F++ CW +VGPD+ VK FF +S M +SINHT + +IPK+ NP ++
Sbjct: 826 KAPGPDGLTARFYKSCWEIVGPDVIKEVKIFFRTSYMKQSINHTNICMIPKITNPETLSD 885
Query: 184 YRPISLCNVVYKLISKILAERLKLFLPNCIHESQSAFIKGRQILDNVVIEHECFHYLNNL 363
YRPI+LCNV+YK+ISK L ERLK L + +SQ+AFI GR + DNV+I HE H L
Sbjct: 886 YRPIALCNVLYKIISKCLVERLKGHLDAIVSDSQAAFIPGRLVNDNVMIAHEMMHSLKTR 945
Query: 364 RHNKNSYMAIKLDMSKAFDRVEWNFLELVLLQMGFASTFVNWLLTCIRTTSFAFNLNGTP 543
+ SYMA+K D+SKA+DRVEWNFLE + GF+ T++ W++ +++ +++ +NG P
Sbjct: 946 KRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFSETWIKWIMGAVKSVNYSVLVNGIP 1005
Query: 544 SGYLIPSRGIRQGDPISPYMFLICSEVFSHLIQRASQIGE 663
G + P RGIRQGDP+SPY+F++C+++ +HLI+ G+
Sbjct: 1006 HGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNRVAEGD 1045
>emb|CAB40051.1| putative protein [Arabidopsis thaliana] gi|7267781|emb|CAB81184.1|
putative protein [Arabidopsis thaliana]
Length = 1294
Score = 246 bits (627), Expect = 4e-63
Identities = 108/220 (49%), Positives = 157/220 (71%)
Frame = +1
Query: 4 KAPGPDGMSPLFFQKCWHLVGPDICTAVKDFFHSSKMLKSINHTLVSLIPKVKNPSCIAH 183
KAPGPDG++ F++ CW +VGPD+ VK FF +S M +SINHT + +IPK+ NP ++
Sbjct: 806 KAPGPDGLTARFYKSCWEIVGPDVIKEVKIFFRTSYMKQSINHTNICMIPKITNPETLSD 865
Query: 184 YRPISLCNVVYKLISKILAERLKLFLPNCIHESQSAFIKGRQILDNVVIEHECFHYLNNL 363
YRPI+LCNV+YK+ISK L ERLK L + +SQ+AFI GR + DNV+I HE H L
Sbjct: 866 YRPIALCNVLYKIISKCLVERLKGHLDAIVSDSQAAFIPGRLVNDNVMIAHEMMHSLKTR 925
Query: 364 RHNKNSYMAIKLDMSKAFDRVEWNFLELVLLQMGFASTFVNWLLTCIRTTSFAFNLNGTP 543
+ SYMA+K D+SKA+DRVEWNFLE + GF+ T++ W++ +++ +++ +NG P
Sbjct: 926 KRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFSETWIKWIMGAVKSVNYSVLVNGIP 985
Query: 544 SGYLIPSRGIRQGDPISPYMFLICSEVFSHLIQRASQIGE 663
G + P RGIRQGDP+SPY+F++C+++ +HLI+ G+
Sbjct: 986 HGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNRVAEGD 1025
>emb|CAB75484.1| putative protein [Arabidopsis thaliana]
Length = 851
Score = 242 bits (617), Expect = 5e-62
Identities = 105/220 (47%), Positives = 157/220 (71%)
Frame = +1
Query: 4 KAPGPDGMSPLFFQKCWHLVGPDICTAVKDFFHSSKMLKSINHTLVSLIPKVKNPSCIAH 183
KAPGPDG++ F+++CW +VG D+ VK FF SS M S+NHT + +IPK++NP ++
Sbjct: 65 KAPGPDGLTARFYKQCWDIVGNDVIKEVKLFFESSHMKTSVNHTNICMIPKIQNPQTLSD 124
Query: 184 YRPISLCNVVYKLISKILAERLKLFLPNCIHESQSAFIKGRQILDNVVIEHECFHYLNNL 363
YRPI+LCNV+YK+ISK + RLK L + + +SQ+AFI GR I DNV+I HE H L
Sbjct: 125 YRPIALCNVLYKVISKCMVNRLKAHLNSIVSDSQAAFIPGRIINDNVMIAHEIMHSLKVR 184
Query: 364 RHNKNSYMAIKLDMSKAFDRVEWNFLELVLLQMGFASTFVNWLLTCIRTTSFAFNLNGTP 543
+ +YMA+K D+SKA+DRVEW+FLE + GF ++ W++ +++ ++ +NG+P
Sbjct: 185 KRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCDKWIGWIMAAVKSVHYSVLINGSP 244
Query: 544 SGYLIPSRGIRQGDPISPYMFLICSEVFSHLIQRASQIGE 663
GY+ P+RGIRQGDP+SPY+F++C ++ SHLI+ + G+
Sbjct: 245 HGYISPTRGIRQGDPLSPYLFILCGDILSHLIKVKASSGD 284
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1524
Score = 241 bits (616), Expect = 7e-62
Identities = 106/220 (48%), Positives = 156/220 (70%)
Frame = +1
Query: 4 KAPGPDGMSPLFFQKCWHLVGPDICTAVKDFFHSSKMLKSINHTLVSLIPKVKNPSCIAH 183
KAPGPDG++ F++ CW +VG D+ VK FF +S M SINHT + +IPK+ NP+ ++
Sbjct: 600 KAPGPDGLTARFYKNCWDIVGYDVILEVKKFFETSFMKPSINHTNICMIPKITNPTTLSD 659
Query: 184 YRPISLCNVVYKLISKILAERLKLFLPNCIHESQSAFIKGRQILDNVVIEHECFHYLNNL 363
YRPI+LCNV+YK+ISK L RLK L + + +SQ+AFI GR I DNV+I HE H L
Sbjct: 660 YRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEVMHSLKVR 719
Query: 364 RHNKNSYMAIKLDMSKAFDRVEWNFLELVLLQMGFASTFVNWLLTCIRTTSFAFNLNGTP 543
+ +YMA+K D+SKA+DRVEW+FLE + GF + ++ W++ +++ ++ +NG+P
Sbjct: 720 KRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSP 779
Query: 544 SGYLIPSRGIRQGDPISPYMFLICSEVFSHLIQRASQIGE 663
GY+ P+RGIRQGDP+SPY+F++C ++ SHLI + G+
Sbjct: 780 HGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRASSGD 819
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1750
Score = 241 bits (616), Expect = 7e-62
Identities = 106/220 (48%), Positives = 156/220 (70%)
Frame = +1
Query: 4 KAPGPDGMSPLFFQKCWHLVGPDICTAVKDFFHSSKMLKSINHTLVSLIPKVKNPSCIAH 183
KAPGPDG++ F++ CW +VG D+ VK FF +S M SINHT + +IPK+ NP+ ++
Sbjct: 826 KAPGPDGLTARFYKNCWDIVGYDVILEVKKFFETSFMKPSINHTNICMIPKITNPTTLSD 885
Query: 184 YRPISLCNVVYKLISKILAERLKLFLPNCIHESQSAFIKGRQILDNVVIEHECFHYLNNL 363
YRPI+LCNV+YK+ISK L RLK L + + +SQ+AFI GR I DNV+I HE H L
Sbjct: 886 YRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEVMHSLKVR 945
Query: 364 RHNKNSYMAIKLDMSKAFDRVEWNFLELVLLQMGFASTFVNWLLTCIRTTSFAFNLNGTP 543
+ +YMA+K D+SKA+DRVEW+FLE + GF + ++ W++ +++ ++ +NG+P
Sbjct: 946 KRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSP 1005
Query: 544 SGYLIPSRGIRQGDPISPYMFLICSEVFSHLIQRASQIGE 663
GY+ P+RGIRQGDP+SPY+F++C ++ SHLI + G+
Sbjct: 1006 HGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRASSGD 1045