BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00047104
         (454 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa ...   101   5e-20
emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga...    99   3e-19
emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulga...    99   4e-19
gb|ABO80460.1| RNA-directed DNA polymerase ; Ribonuclease H, put...    98   8e-19
gb|ABA98491.1| retrotransposon protein, putative, unclassified [...    97   1e-18

>gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1656

 Score =  101 bits (252), Expect = 5e-20
 Identities = 54/156 (34%), Positives = 80/156 (51%), Gaps = 5/156 (3%)
 Frame = -1

Query: 454  SPQKKARLELWTCLKLIAQAEVLPWIMAGDFNAMLGSEDRSGGARNQKSGCKFFRQCVKD 275
            +P    +   W  +      + LPW++ GDFN +L   ++ GG        K FR  + +
Sbjct: 713  NPHDNEKRAFWRLMYSRFPVQSLPWLVLGDFNEVLDPSEKWGGGPPLPWRIKLFRDFLNN 772

Query: 274  IKALDLGFKGPRFTW-----NRGDLSERIDRALSNLEFLELFPKVQVQHLMRIKSDHRPI 110
                DL FKGP F+W      R  + ER+DRAL N+ +    P  Q+ HL +I SDHRP+
Sbjct: 773  GHLRDLHFKGPGFSWFAMRHGRVFIKERLDRALGNIAWSSSQPNTQILHLPKIGSDHRPL 832

Query: 109  LIQSEMSMSNVDQRPFRFISPWITHQDFSRMVANNW 2
            L+ S   M N   R FRF   W TH+++S ++  +W
Sbjct: 833  LLDSNPKMLN-KTRLFRFEQMWTTHEEYSDVIQRSW 867


>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1378

 Score = 99.4 bits (246), Expect = 3e-19
 Identities = 60/159 (37%), Positives = 86/159 (54%), Gaps = 8/159 (5%)
 Frame = -1

Query: 454 SPQKKARLELWTCLKLIAQAEVLPWIMAGDFNAMLGSEDRSGGARNQ-KSGCKFFRQCVK 278
           SP    R ELW  L+ I      PW++AGDFN      +R+G   ++ +  CK F   ++
Sbjct: 109 SPDSTLRKELWRELEQIKNQYTGPWLLAGDFNETSSLCERNGSESSEMQRRCKDFANWIE 168

Query: 277 DIKALDLGFKGPRFTWNRG-----DLSERIDRALSNLEFLELFPKVQVQHLMRIKSDHRP 113
           +   +DLGF GP  TW+RG       S R+DR L+N E+   F +  V++L + +SDH P
Sbjct: 169 NNALIDLGFTGPAHTWSRGLSPTTFKSARLDRGLANSEWKLKFTEGVVRNLPKSQSDHCP 228

Query: 112 ILIQSEMSMSNVDQ--RPFRFISPWITHQDFSRMVANNW 2
           ILI S    + V +  +PFRF + W+ HQ F   V  NW
Sbjct: 229 ILI-STSGFAPVPRIIKPFRFQAAWLNHQVFCEFVRKNW 266


>emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1363

 Score = 99.0 bits (245), Expect = 4e-19
 Identities = 55/150 (36%), Positives = 79/150 (52%), Gaps = 5/150 (3%)
 Frame = -1

Query: 436 RLELWTCLKLIAQAEVLPWIMAGDFNAMLGSEDRSGGARNQKSGCKFFRQCVKDIKALDL 257
           R + W  L   +     PW++AGD N +L   ++ GG +  K   K  +  +     LDL
Sbjct: 116 RNKYWVDLTEDSPPRGTPWLVAGDMNEVLHGNEKMGGRQVGKEQGKQCKDWIAANALLDL 175

Query: 256 GFKGPRFTWNRGD-----LSERIDRALSNLEFLELFPKVQVQHLMRIKSDHRPILIQSEM 92
           GF+GP+FTW  G      + ER+DRAL N E+L+LFP  +V HL R  SDH P+LI    
Sbjct: 176 GFQGPKFTWTNGRTGGSLIKERLDRALVNSEWLDLFPDTKVIHLPRTFSDHCPLLILFNE 235

Query: 91  SMSNVDQRPFRFISPWITHQDFSRMVANNW 2
           +  + +  PFR    W  H DF+ ++   W
Sbjct: 236 NPRS-ESFPFRCKEVWAYHPDFTNVIEETW 264


>gb|ABO80460.1| RNA-directed DNA polymerase ; Ribonuclease H, putative [Medicago
           truncatula]
          Length = 311

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 55/156 (35%), Positives = 82/156 (52%), Gaps = 5/156 (3%)
 Frame = -1

Query: 454 SPQKKARLELWTCLKLIAQAEVLPWIMAGDFNAMLGSEDRSGGARNQKSGCKFFRQCVKD 275
           SP    R   WT L  + ++   PW++ GDFN  +   D+ GG  N  S    F   + D
Sbjct: 73  SPNATMRTPFWTYLSDLNRSIAGPWMLIGDFNETILHSDQRGGIFNH-SRAAIFSNFMAD 131

Query: 274 IKALDLGFKGPRFTWNRGD-----LSERIDRALSNLEFLELFPKVQVQHLMRIKSDHRPI 110
              LDL   G RFTW+R       LS+++DRA++N+++   FP+  +  L R  SDH  I
Sbjct: 132 CNLLDLTAIGGRFTWHRNHNGHRILSKKLDRAIANVDWRLSFPEAFIDVLCRTHSDHNLI 191

Query: 109 LIQSEMSMSNVDQRPFRFISPWITHQDFSRMVANNW 2
           L++      +   RPFRF + WI H D++ +V+N W
Sbjct: 192 LLRFGGLPQSRGHRPFRFEAAWIGHVDYANLVSNAW 227


>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 1621

 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 53/151 (35%), Positives = 78/151 (51%), Gaps = 10/151 (6%)
 Frame = -1

Query: 424 WTCLKLIAQAEVLPWIMAGDFNAMLGSEDRSGGARNQKSGCKFFRQCVKDIKALDLGFKG 245
           WT ++ +      PW+MAGDFN +L S ++ GG    +S    FR  + D    DLGF+G
Sbjct: 364 WTTMRGLIDNPTTPWLMAGDFNEILFSHEKQGGRMKAQSAMDEFRHALTDCGLDDLGFEG 423

Query: 244 PRFTW------NRGDLSERIDRALSNLEFLELFPKVQVQHLMRIKSDHRPILIQSEMSMS 83
             FTW        G + ER+DRA++N E+  +FP  +V +     SDHRP++I+ E    
Sbjct: 424 DAFTWRNHSHSQEGYIRERLDRAVANPEWRAMFPAARVINGDPRHSDHRPVIIELEGKNK 483

Query: 82  NVDQR----PFRFISPWITHQDFSRMVANNW 2
            V  R     FRF + W+  + F  +V   W
Sbjct: 484 GVRGRNGHNDFRFEAAWLEEEKFKEVVKEAW 514