BLASTX nr result
ID: Cephaelis21_contig00046421
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cephaelis21_contig00046421
(619 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002284293.1| PREDICTED: pentatricopeptide repeat-containi... 97 2e-18
ref|XP_004138810.1| PREDICTED: pentatricopeptide repeat-containi... 89 6e-16
ref|XP_003607858.1| Pentatricopeptide repeat-containing protein ... 80 2e-13
ref|XP_002867987.1| binding protein [Arabidopsis lyrata subsp. l... 80 2e-13
ref|NP_193587.4| pentatricopeptide repeat-containing protein [Ar... 79 5e-13
>ref|XP_002284293.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18520-like [Vitis vinifera]
Length = 595
Score = 97.1 bits (240), Expect = 2e-18
Identities = 51/122 (41%), Positives = 72/122 (59%), Gaps = 8/122 (6%)
Frame = -1
Query: 343 PFVVCGNPSLLFDNYTSYAPHTLPEGPDFDHSLLVNNPCVVGQ--------WLQSSCNAK 188
P + P LF S +P + ++ +N +VG WLQS C +
Sbjct: 21 PQITLFQPPSLFTIRRSQSPEPRKNSKTWKNAGFLNVQPIVGHVNANLLAFWLQSCCTVR 80
Query: 187 ELRRIHALVLRHLNGSDIFVSNNLISQYVKYGMLVEARNVFDKMLERNAVSWTAMLNGYL 8
E+RR+HA+V + L+ S +V+NNLIS Y ++G LVEAR VFDKM ERN VSWTA++NGY
Sbjct: 81 EVRRVHAVVFKCLDNSVTYVNNNLISAYSRFGKLVEARKVFDKMPERNVVSWTAVVNGYS 140
Query: 7 KF 2
++
Sbjct: 141 RY 142
Score = 55.5 bits (132), Expect = 8e-06
Identities = 19/59 (32%), Positives = 40/59 (67%)
Frame = -1
Query: 181 RRIHALVLRHLNGSDIFVSNNLISQYVKYGMLVEARNVFDKMLERNAVSWTAMLNGYLK 5
+++H +++ + D+F+ +L+ Y K G ++++R VFD M +RN V+WT+++ GY +
Sbjct: 284 KQLHGAIIKKMFKEDVFIGTSLVGMYAKCGEILDSRKVFDGMKKRNTVTWTSIIAGYAR 342
>ref|XP_004138810.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18520-like [Cucumis sativus]
gi|449490224|ref|XP_004158542.1| PREDICTED:
pentatricopeptide repeat-containing protein
At4g18520-like [Cucumis sativus]
Length = 619
Score = 89.0 bits (219), Expect = 6e-16
Identities = 38/76 (50%), Positives = 58/76 (76%)
Frame = -1
Query: 235 NPCVVGQWLQSSCNAKELRRIHALVLRHLNGSDIFVSNNLISQYVKYGMLVEARNVFDKM 56
+P ++G WL+SS + K+LR +HA +LR+ I+V NNL+S Y++ GMLV+AR VFD+M
Sbjct: 89 SPYLIGVWLRSSRSVKKLRAVHAFILRNFTSFGIYVGNNLLSSYLRLGMLVDARKVFDEM 148
Query: 55 LERNAVSWTAMLNGYL 8
R+ V+WTA++NGY+
Sbjct: 149 PMRSVVTWTAIINGYI 164
Score = 59.3 bits (142), Expect = 5e-07
Identities = 23/59 (38%), Positives = 40/59 (67%)
Frame = -1
Query: 181 RRIHALVLRHLNGSDIFVSNNLISQYVKYGMLVEARNVFDKMLERNAVSWTAMLNGYLK 5
R++H L+++ + +D+FV +L+ Y K G L ++R VFD M RN V+WT+++ GY +
Sbjct: 308 RQLHGLIIKKIIKNDVFVGTSLVDMYAKCGNLADSREVFDGMRNRNTVTWTSIIAGYAR 366
>ref|XP_003607858.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355508913|gb|AES90055.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 708
Score = 80.5 bits (197), Expect = 2e-13
Identities = 35/78 (44%), Positives = 51/78 (65%)
Frame = -1
Query: 235 NPCVVGQWLQSSCNAKELRRIHALVLRHLNGSDIFVSNNLISQYVKYGMLVEARNVFDKM 56
NP V WL+ + +E+ R+H + L+ GS +V NNLI Y++ G L +AR VFD M
Sbjct: 152 NPETVAHWLRLCYDVEEVGRVHTIALKCFRGSSTYVDNNLICSYLRLGKLAQARKVFDGM 211
Query: 55 LERNAVSWTAMLNGYLKF 2
RN V+WTA+++GYLK+
Sbjct: 212 SRRNTVTWTAIIDGYLKY 229
Score = 55.5 bits (132), Expect = 8e-06
Identities = 20/58 (34%), Positives = 39/58 (67%)
Frame = -1
Query: 178 RIHALVLRHLNGSDIFVSNNLISQYVKYGMLVEARNVFDKMLERNAVSWTAMLNGYLK 5
++H +++ + SD+F+ +LI Y K G +V ++ VFD+M RN +WT++++GY +
Sbjct: 372 QLHGAIVKKICKSDVFIGTSLIDMYAKCGEIVSSKKVFDRMKVRNTATWTSIISGYAR 429
>ref|XP_002867987.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297313823|gb|EFH44246.1| binding protein [Arabidopsis
lyrata subsp. lyrata]
Length = 616
Score = 80.5 bits (197), Expect = 2e-13
Identities = 38/75 (50%), Positives = 53/75 (70%)
Frame = -1
Query: 226 VVGQWLQSSCNAKELRRIHALVLRHLNGSDIFVSNNLISQYVKYGMLVEARNVFDKMLER 47
++ +WLQSS + ++RIHA+ L+ + I+ NNLIS V+ G LV AR VFD M +R
Sbjct: 87 LLAEWLQSSNGMRLIKRIHAMALKCFDDQVIYFGNNLISSCVRLGDLVYARKVFDSMPDR 146
Query: 46 NAVSWTAMLNGYLKF 2
N V+WTAM++GYLKF
Sbjct: 147 NTVTWTAMIDGYLKF 161
Score = 57.4 bits (137), Expect = 2e-06
Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Frame = -1
Query: 235 NPCVVGQWLQSSCNAKEL---RRIHALVLRHLNGSDIFVSNNLISQYVKYGMLVEARNVF 65
NP L++ N++ L R IH++ ++ S++FV + LI Y K G + EA VF
Sbjct: 485 NPFTYSSALKACANSESLLIGRSIHSIAKKNHALSNVFVGSALIHMYAKCGFVSEAFRVF 544
Query: 64 DKMLERNAVSWTAMLNGYLK 5
D M E+N VSW AM+ GY +
Sbjct: 545 DSMPEKNLVSWKAMIMGYAR 564
>ref|NP_193587.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122236144|sp|Q0WNP3.1|PP319_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At4g18520 gi|110738662|dbj|BAF01256.1| hypothetical
protein [Arabidopsis thaliana]
gi|332658657|gb|AEE84057.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 617
Score = 79.3 bits (194), Expect = 5e-13
Identities = 37/75 (49%), Positives = 53/75 (70%)
Frame = -1
Query: 226 VVGQWLQSSCNAKELRRIHALVLRHLNGSDIFVSNNLISQYVKYGMLVEARNVFDKMLER 47
++ +WLQSS + ++RIHA+ L+ + I+ NNLIS V+ G LV AR VFD M E+
Sbjct: 87 LLAEWLQSSNGMRLIKRIHAMALKCFDDQVIYFGNNLISSCVRLGDLVYARKVFDSMPEK 146
Query: 46 NAVSWTAMLNGYLKF 2
N V+WTAM++GYLK+
Sbjct: 147 NTVTWTAMIDGYLKY 161
Score = 57.4 bits (137), Expect = 2e-06
Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Frame = -1
Query: 235 NPCVVGQWLQSSCNAKEL---RRIHALVLRHLNGSDIFVSNNLISQYVKYGMLVEARNVF 65
NP L++ N++ L R IH++ ++ S++FV + LI Y K G + EA VF
Sbjct: 485 NPFTYSSALKACANSESLLIGRSIHSIAKKNHALSNVFVGSALIHMYAKCGFVSEAFRVF 544
Query: 64 DKMLERNAVSWTAMLNGYLK 5
D M E+N VSW AM+ GY +
Sbjct: 545 DSMPEKNLVSWKAMIMGYAR 564