BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00043820
         (766 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD24831.1| putative non-LTR retroelement reverse transcripta...    91   5e-30
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta...    91   1e-29
emb|CAB75484.1| putative protein [Arabidopsis thaliana]                92   2e-29
gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...    83   2e-28
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam...    88   1e-27

>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1524

 Score = 90.9 bits (224), Expect(2) = 5e-30
 Identities = 40/89 (44%), Positives = 58/89 (65%)
 Frame = -2

Query: 762 INKKVRGSNVALKLDMTKAFDRVLWPYLCAIFRAFGFSETWISLIWRCISSAHF*IIING 583
           + K+V  + +A+K D++KA+DRV W +L    R FGF   WI  I   + S H+ ++ING
Sbjct: 718 VRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLING 777

Query: 582 NSRGFFKSTRGIRQSDPLSPYLFIISDEL 496
           +  G+   TRGIRQ DPLSPYLFI+  ++
Sbjct: 778 SPHGYITPTRGIRQGDPLSPYLFILCGDI 806



 Score = 66.6 bits (161), Expect(2) = 5e-30
 Identities = 36/105 (34%), Positives = 55/105 (52%)
 Frame = -1

Query: 421  ISHLSYVDDVIIFFSGHKKSLLLIMKTIRNYENCSGQKINIQKSSFLTVSTVLQDRKDKI 242
            I+HL + DD + F   + ++   +      YE  SGQKIN+QKS     S V    + K+
Sbjct: 832  ITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMITFGSRVYGSTQSKL 891

Query: 241  KRITGFSHKGILVKYLGCPLFYERKKKVYFTELLESFRSKIQTWS 107
            K+I    ++G   KYLG P  + RKKK  F  +++  + +  TWS
Sbjct: 892  KQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWS 936


>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1750

 Score = 90.9 bits (224), Expect(2) = 1e-29
 Identities = 40/89 (44%), Positives = 58/89 (65%)
 Frame = -2

Query: 762  INKKVRGSNVALKLDMTKAFDRVLWPYLCAIFRAFGFSETWISLIWRCISSAHF*IIING 583
            + K+V  + +A+K D++KA+DRV W +L    R FGF   WI  I   + S H+ ++ING
Sbjct: 944  VRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLING 1003

Query: 582  NSRGFFKSTRGIRQSDPLSPYLFIISDEL 496
            +  G+   TRGIRQ DPLSPYLFI+  ++
Sbjct: 1004 SPHGYITPTRGIRQGDPLSPYLFILCGDI 1032



 Score = 65.5 bits (158), Expect(2) = 1e-29
 Identities = 35/105 (33%), Positives = 55/105 (52%)
 Frame = -1

Query: 421  ISHLSYVDDVIIFFSGHKKSLLLIMKTIRNYENCSGQKINIQKSSFLTVSTVLQDRKDKI 242
            I+HL + DD + F   + ++   +      YE  SGQKIN+QKS     S V    + ++
Sbjct: 1058 ITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMITFGSRVYGSTQSRL 1117

Query: 241  KRITGFSHKGILVKYLGCPLFYERKKKVYFTELLESFRSKIQTWS 107
            K+I    ++G   KYLG P  + RKKK  F  +++  + +  TWS
Sbjct: 1118 KQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWS 1162


>emb|CAB75484.1| putative protein [Arabidopsis thaliana]
          Length = 851

 Score = 92.0 bits (227), Expect(3) = 2e-29
 Identities = 40/89 (44%), Positives = 59/89 (66%)
 Frame = -2

Query: 762 INKKVRGSNVALKLDMTKAFDRVLWPYLCAIFRAFGFSETWISLIWRCISSAHF*IIING 583
           + K+V  + +A+K D++KA+DRV W +L    R FGF + WI  I   + S H+ ++ING
Sbjct: 183 VRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCDKWIGWIMAAVKSVHYSVLING 242

Query: 582 NSRGFFKSTRGIRQSDPLSPYLFIISDEL 496
           +  G+   TRGIRQ DPLSPYLFI+  ++
Sbjct: 243 SPHGYISPTRGIRQGDPLSPYLFILCGDI 271



 Score = 62.4 bits (150), Expect(3) = 2e-29
 Identities = 33/105 (31%), Positives = 54/105 (51%)
 Frame = -1

Query: 421 ISHLSYVDDVIIFFSGHKKSLLLIMKTIRNYENCSGQKINIQKSSFLTVSTVLQDRKDKI 242
           I+HL + DD + F   + ++   +      YE  SGQKIN+QKS     S V    + ++
Sbjct: 297 ITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSLITFGSRVYGSTQTRL 356

Query: 241 KRITGFSHKGILVKYLGCPLFYERKKKVYFTELLESFRSKIQTWS 107
           K +    ++G   KYLG P  + RKKK  F  +++  + +  +WS
Sbjct: 357 KTLLNIPNQGGGGKYLGLPEQFGRKKKEMFNYIIDRVKERTASWS 401



 Score = 21.6 bits (44), Expect(3) = 2e-29
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -2

Query: 99  FLSKRSRLFLIKHVLTSIPEQLIAVLDPPAGII 1
           FLS   +  L+K V  ++P   ++    P GI+
Sbjct: 404 FLSPAGKEILLKSVALAMPVYAMSCFKLPQGIV 436


>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 642

 Score = 82.8 bits (203), Expect(2) = 2e-28
 Identities = 39/89 (43%), Positives = 57/89 (64%)
 Frame = -2

Query: 762 INKKVRGSNVALKLDMTKAFDRVLWPYLCAIFRAFGFSETWISLIWRCISSAHF*IIING 583
           ++ K  G N+ALK+D+TKAFD + W +L  + + FGF+E + + I   + S+   I +NG
Sbjct: 309 LDNKSFGGNLALKIDVTKAFDTLNWDFLLLVLKTFGFNELFCNWIKTILHSSKMFISMNG 368

Query: 582 NSRGFFKSTRGIRQSDPLSPYLFIISDEL 496
              GFF   RG+RQ DPLSP LF I +E+
Sbjct: 369 AQHGFFNCNRGVRQGDPLSPLLFCIVEEV 397



 Score = 69.7 bits (169), Expect(2) = 2e-28
 Identities = 34/108 (31%), Positives = 58/108 (53%)
 Frame = -1

Query: 433 SCFPISHLSYVDDVIIFFSGHKKSLLLIMKTIRNYENCSGQKINIQKSSFLTVSTVLQDR 254
           +C P  H  YVDD+++F      SL+++      Y +CSGQ +NI+K SF+    +   R
Sbjct: 420 NCLPF-HCFYVDDLMVFCKAKMSSLIVLKSLFTRYADCSGQIMNIRK-SFIFAGGITDTR 477

Query: 253 KDKIKRITGFSHKGILVKYLGCPLFYERKKKVYFTELLESFRSKIQTW 110
            + I  I GF+   +   YLG P+F  + K ++F  + +  ++K+  W
Sbjct: 478 MNNIVNILGFNVGSLPFTYLGAPIFKGKPKGIHFQPIADKVKAKLAKW 525


>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
            42.57) [Arabidopsis thaliana]
          Length = 1662

 Score = 88.2 bits (217), Expect(2) = 1e-27
 Identities = 43/91 (47%), Positives = 61/91 (67%)
 Frame = -2

Query: 756  KKVRGSNVALKLDMTKAFDRVLWPYLCAIFRAFGFSETWISLIWRCISSAHF*IIINGNS 577
            K+V  S +A+K D++KA+DRV W +L    R FGFSETWI  I   + S ++ +++NG  
Sbjct: 946  KRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFSETWIKWIMGAVKSVNYSVLVNGIP 1005

Query: 576  RGFFKSTRGIRQSDPLSPYLFIISDELYLDH 484
             G  +  RGIRQ DPLSPYLFI+  ++ L+H
Sbjct: 1006 HGTIQPQRGIRQGDPLSPYLFILCADI-LNH 1035



 Score = 61.6 bits (148), Expect(2) = 1e-27
 Identities = 33/105 (31%), Positives = 53/105 (50%)
 Frame = -1

Query: 421  ISHLSYVDDVIIFFSGHKKSLLLIMKTIRNYENCSGQKINIQKSSFLTVSTVLQDRKDKI 242
            ++HL + DD + F   + ++   +      YE  SGQKIN+ KS     S V    ++++
Sbjct: 1058 VTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSKSMITFGSRVHGTTQNRL 1117

Query: 241  KRITGFSHKGILVKYLGCPLFYERKKKVYFTELLESFRSKIQTWS 107
            K I G    G   KYLG P  + RKK+  F  ++E  + +  +WS
Sbjct: 1118 KNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSSWS 1162