BLASTX nr result

ID: Cephaelis21_contig00042520 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00042520
         (220 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI19924.3| unnamed protein product [Vitis vinifera]               76   3e-12
ref|XP_002279206.1| PREDICTED: pentatricopeptide repeat-containi...    76   3e-12
ref|XP_003522563.1| PREDICTED: pentatricopeptide repeat-containi...    68   7e-10
ref|XP_002530092.1| pentatricopeptide repeat-containing protein,...    65   6e-09
ref|XP_002302207.1| predicted protein [Populus trichocarpa] gi|2...    62   5e-08

>emb|CBI19924.3| unnamed protein product [Vitis vinifera]
          Length = 912

 Score = 76.3 bits (186), Expect = 3e-12
 Identities = 42/74 (56%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
 Frame = +1

Query: 1   AASFVNHVLHKATAANHHKQPQPASAKSLTPT-ILNHLRFGRITKAVSILFSSPVPFDFS 177
           AAS +N +L + T   H  +  P  +K+LT T +L HL  GR+ KAVSILF+SPVPF FS
Sbjct: 5   AASVLNRLLQRNT---HKPKALPTDSKALTTTTVLTHLNAGRLRKAVSILFASPVPFPFS 61

Query: 178 LYASLFQICASNKA 219
           LYA LFQIC+SN A
Sbjct: 62  LYARLFQICSSNLA 75


>ref|XP_002279206.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26540
           [Vitis vinifera]
          Length = 711

 Score = 76.3 bits (186), Expect = 3e-12
 Identities = 42/74 (56%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
 Frame = +1

Query: 1   AASFVNHVLHKATAANHHKQPQPASAKSLTPT-ILNHLRFGRITKAVSILFSSPVPFDFS 177
           AAS +N +L + T   H  +  P  +K+LT T +L HL  GR+ KAVSILF+SPVPF FS
Sbjct: 5   AASVLNRLLQRNT---HKPKALPTDSKALTTTTVLTHLNAGRLRKAVSILFASPVPFPFS 61

Query: 178 LYASLFQICASNKA 219
           LYA LFQIC+SN A
Sbjct: 62  LYARLFQICSSNLA 75


>ref|XP_003522563.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g26540-like [Glycine max]
          Length = 698

 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 37/74 (50%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
 Frame = +1

Query: 1   AASFVNHVLHKATAANH-HKQPQPASAKSLTPTILNHLRFGRITKAVSILFSSPVPFDFS 177
           AAS +N +L K     H H Q QPA+  ++  TIL +L+ GRI KA SILF+ P PF FS
Sbjct: 5   AASILNQLLRKQNLKPHPHSQTQPAT-NAVINTILTYLKAGRIRKATSILFAFPKPFPFS 63

Query: 178 LYASLFQICASNKA 219
           LYA  F++C+S++A
Sbjct: 64  LYALFFRLCSSHRA 77


>ref|XP_002530092.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223530403|gb|EEF32291.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 718

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 34/70 (48%), Positives = 47/70 (67%)
 Frame = +1

Query: 1   AASFVNHVLHKATAANHHKQPQPASAKSLTPTILNHLRFGRITKAVSILFSSPVPFDFSL 180
           A+S +N +L   T      Q +P  +K+LT TI+NHL+  R+ KAVSILF+S     +SL
Sbjct: 3   ASSILNRILSNNTCKT---QTKPTKSKALTNTIINHLKANRLQKAVSILFASNSSVPYSL 59

Query: 181 YASLFQICAS 210
           YASLFQ+C+S
Sbjct: 60  YASLFQLCSS 69


>ref|XP_002302207.1| predicted protein [Populus trichocarpa] gi|222843933|gb|EEE81480.1|
           predicted protein [Populus trichocarpa]
          Length = 709

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 34/72 (47%), Positives = 49/72 (68%)
 Frame = +1

Query: 4   ASFVNHVLHKATAANHHKQPQPASAKSLTPTILNHLRFGRITKAVSILFSSPVPFDFSLY 183
           AS ++ +L   T    + Q +PA+ K+LT  IL+HL   R+ +AVSILF+SP  F +SLY
Sbjct: 4   ASILSSLLSNKTL---NLQTRPANVKALTKQILSHLEANRLKQAVSILFASPDCFAYSLY 60

Query: 184 ASLFQICASNKA 219
           A LFQ+C+S+ A
Sbjct: 61  AHLFQVCSSSLA 72


Top