BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00041306
         (532 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD37019.2| putative non-LTR retrolelement reverse transcript...   118   6e-25
emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga...   100   2e-19
gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptas...    99   4e-19
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ...    97   1e-18
emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulga...    93   2e-17

>gb|AAD37019.2| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 855

 Score =  118 bits (295), Expect = 6e-25
 Identities = 66/179 (36%), Positives = 87/179 (48%), Gaps = 2/179 (1%)
 Frame = -2

Query: 531  SDHRPLLIQTEREEGARK-ERPFRFMSPWLMHQDFSNLVVNHWRDNGSLTDTIRAFTGAA 355
            SDH P+ IQ E E  +    RPFRF + WL H  F +L+   W   G     + A     
Sbjct: 635  SDHAPIYIQLEPEVRSNPLRRPFRFEAAWLTHSGFKDLLQASWNTEGETPVALAALKSKL 694

Query: 354  KVWNKDVFGHIQQRKHRAMARLQGIQRSLEKKSNKYLVKXXXXXXXXXXXXXXXXXXLWK 175
            K WN++VFG + +RK   M  ++ +Q  LE      L+                   LW 
Sbjct: 695  KKWNREVFGDVNRRKESLMNEIKVVQELLEINQTDNLLSKEEELIKEFDVVLEQEEVLWF 754

Query: 174  QKSRCQWLALGDRNTKYFHSKTKARRRENFIGNLLIDD-DWTDDQAKLKTAAYEYFKNL 1
            QKSR +W+ LGDRNTKYFH+ T  RRR N I  L  DD  W   Q +L+  A +Y+  L
Sbjct: 755  QKSREKWVELGDRNTKYFHTMTVVRRRRNRIEMLKADDGSWVSQQQELEKMAVDYYSRL 813


>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1378

 Score =  100 bits (248), Expect = 2e-19
 Identities = 59/179 (32%), Positives = 86/179 (48%), Gaps = 2/179 (1%)
 Frame = -2

Query: 531 SDHRPLLIQTEREEGA-RKERPFRFMSPWLMHQDFSNLVVNHWRDNGSLTDTIRAFTGAA 355
           SDH P+LI T       R  +PFRF + WL HQ F   V  +W  +  +   +++F    
Sbjct: 224 SDHCPILISTSGFAPVPRIIKPFRFQAAWLNHQVFCEFVRKNWNADAPIVPFLKSFADKL 283

Query: 354 KVWNKDVFGHIQQRKHRAMARLQGIQRSLEKKSNKYLVKXXXXXXXXXXXXXXXXXXLWK 175
             WNK+ F +I ++K    AR+ G+Q  L      +L+K                  LW 
Sbjct: 284 NKWNKEEFYNIFRKKSELWARISGVQALLSTGRQNHLIKLEAKLRREMDIVLDDEETLWF 343

Query: 174 QKSRCQWLALGDRNTKYFHSKTKARRRENFIGNLLIDD-DWTDDQAKLKTAAYEYFKNL 1
           QKSR + +  GDRNT+YFH  T  RR  N I  L  +D +W  +  ++K     Y+K+L
Sbjct: 344 QKSRMEAICDGDRNTRYFHLSTVIRRSRNRIDMLQNNDGEWISNPMEVKAMVLGYWKHL 402


>gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
           [Medicago truncatula]
          Length = 1296

 Score = 99.0 bits (245), Expect = 4e-19
 Identities = 63/177 (35%), Positives = 91/177 (51%), Gaps = 2/177 (1%)
 Frame = -2

Query: 531 SDHRPLLIQTEREEGARKERPFRFMSPWLMHQDFSNLVVNHWRDNG-SLTDTIRAFTGAA 355
           SDH PLL++       R  RPFRF + W+ H D+ N+V   W  +  + T ++      +
Sbjct: 221 SDHNPLLLRFGGLPLTRGPRPFRFEAAWIDHYDYGNVVKRSWSTHTHNPTASLIKVMENS 280

Query: 354 KVWNKDVFGHIQQRKHRAMARLQGIQRSLEKKSNKYLVKXXXXXXXXXXXXXXXXXXLWK 175
            ++N DVFG+I QRK R   RL+G+Q  LE+  +                       LW 
Sbjct: 281 IIFNHDVFGNIFQRKSRVEWRLKGVQSYLERVDSYRHTLLEKELQDEYNHILFQEEMLWY 340

Query: 174 QKSRCQWLALGDRNTKYFHSKTKARRRENFIGNLLIDDD-WTDDQAKLKTAAYEYFK 7
           QKSR QW+ LGD+NT +FH++T  RR+ N I  L + +   T D   L+  A +YFK
Sbjct: 341 QKSREQWVKLGDKNTAFFHAQTVIRRKWNKIHKLQLPNGISTSDSNILQEEALKYFK 397


>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
           gi|7268307|emb|CAB78601.1| reverse transcriptase like
           protein [Arabidopsis thaliana]
          Length = 929

 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 56/161 (34%), Positives = 79/161 (49%), Gaps = 1/161 (0%)
 Frame = -2

Query: 480 KERPFRFMSPWLMHQDFSNLVVNHWRDNGSLTDTIRAFTGAAKVWNKDVFGHIQQRKHRA 301
           + RPFRF + WL H+ F  L+   W    S    +       K WNK+VFG+I  RK + 
Sbjct: 51  RRRPFRFEAAWLSHEGFKELLTASWDTGLSTPVALNRLRWQLKKWNKEVFGNIHVRKEKV 110

Query: 300 MARLQGIQRSLEKKSNKYLVKXXXXXXXXXXXXXXXXXXLWKQKSRCQWLALGDRNTKYF 121
           ++ L+ +Q  LE      L+                   LW QKSR + LALGDRNT +F
Sbjct: 111 VSDLKAVQDLLEVVQTDDLLMKEDTLLKEFDVLLHQEETLWFQKSREKLLALGDRNTTFF 170

Query: 120 HSKTKARRRENFIGNLLIDDD-WTDDQAKLKTAAYEYFKNL 1
           H+ T  RRR N I  L   +D W  ++  L+  A +Y++ L
Sbjct: 171 HTSTVIRRRRNRIEMLKDSEDRWVTEKEALEKLAMDYYRKL 211


>emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1363

 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 63/180 (35%), Positives = 83/180 (46%), Gaps = 3/180 (1%)
 Frame = -2

Query: 531 SDHRPLLIQTEREEGARKER-PFRFMSPWLMHQDFSNLVVNHWRDNGSLTDTIR-AFTGA 358
           SDH PLLI     E  R E  PFR    W  H DF+N++   W  + +     R  F  +
Sbjct: 224 SDHCPLLILFN--ENPRSESFPFRCKEVWAYHPDFTNVIEETWGSHHNSYVAARDLFLSS 281

Query: 357 AKVWNKDVFGHIQQRKHRAMARLQGIQRSLEKKSNKYLVKXXXXXXXXXXXXXXXXXXLW 178
            K W+K VFG I Q+K R +ARL GIQ+SL    + +L K                   W
Sbjct: 282 VKSWSKYVFGSIFQKKKRILARLGGIQKSLSIHPSVFLSKLEIDLLVELNELSKQERVFW 341

Query: 177 KQKSRCQWLALGDRNTKYFHSKTKARRRENFIGNLLIDD-DWTDDQAKLKTAAYEYFKNL 1
            QK+      LGD NTKYFH+  K R  +  I  L  D+ DW  +   LK     +F+ +
Sbjct: 342 AQKAGIDRAKLGDMNTKYFHTLAKIRTCKRKISCLKNDNHDWVSNNEDLKKMMMSHFEKI 401