BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00039640
         (753 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD21778.1| putative non-LTR retroelement reverse transcripta...    82   8e-16
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta...    85   1e-14
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi...    82   4e-14
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1...    75   7e-14
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta...    64   2e-11

>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1715

 Score = 82.4 bits (202), Expect(2) = 8e-16
 Identities = 51/178 (28%), Positives = 86/178 (48%), Gaps = 3/178 (1%)
 Frame = +1

Query: 1   ISQLREELQFHLPDLVFICETKNKKNFVHSVFQKIKKLASWEITDPTGLSGGLALAWSDQ 180
           + +L E  + +  D++F+ ETK + N+   +  K+       I  P GLSGGL + W   
Sbjct: 379 VRRLEEVQRVYFLDMLFLIETKQQDNYTRDLGVKMG-FEDMCIISPRGLSGGLVVYWKKH 437

Query: 181 IVVKQLIVTDF---SFQLEFSLQGLA*TCWGIFIYASTDKNQRLLQWHYLEHQRPNWGSN 351
           + + Q+I  D       +E+       +C    IY     ++R   W  L+    +    
Sbjct: 438 LSI-QVISHDVRLVDLYVEYKNFNFYLSC----IYGHPIPSERHHLWEKLQRVSAHRSGP 492

Query: 352 WFLGGDLNDIRDPSEKRGGRTRHLGSCNHFNNFIRNMNMEEIQFLGRPWTWSNHRMGE 525
           W + GD N+I + +EK+GGR R +GS  +F N I   NM++++  G P++W   R  E
Sbjct: 493 WMMCGDFNEILNLNEKKGGRRRSIGSLQNFTNMINCCNMKDLKSKGNPYSWVGKRQNE 550



 Score = 27.3 bits (59), Expect(2) = 8e-16
 Identities = 15/67 (22%), Positives = 23/67 (34%)
 Frame = +3

Query: 525 NRFFASPDWLYSHPRAVLHHLYKQXXXXXXXXXXXXXXCLKPKKRFYFDKRFLDLPDFES 704
           +R F + DW  S P      L                     + +F +D+R     DF  
Sbjct: 557 DRVFINSDWQASFPAFETEFLPIAGSDHAPVIIDIAEEVCTKRGQFRYDRRHFQFEDFVD 616

Query: 705 TIQAAWN 725
           ++Q  WN
Sbjct: 617 SVQRGWN 623


>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1374

 Score = 85.1 bits (209), Expect = 1e-14
 Identities = 56/189 (29%), Positives = 87/189 (46%), Gaps = 13/189 (6%)
 Frame = +1

Query: 1   ISQLREELQFHLPDLVFICETKNKKNFVHSVFQKIKKLASWEI--TDPTGLSGGLALAWS 174
           +  LRE    + P+++F+CETK ++N++ +V   +  L  +++   +P G SGGLAL W 
Sbjct: 17  VRHLREIRGLYFPEVIFLCETKKRRNYLENV---VGHLGFFDLHTVEPIGKSGGLALMWK 73

Query: 175 DQIVVKQL-----------IVTDFSFQLEFSLQGLA*TCWGIFIYASTDKNQRLLQWHYL 321
           D + +K L           I  D  F L         TC    IY    + +R   W  L
Sbjct: 74  DSVQIKVLQSDKRLIDALLIWQDKEFYL---------TC----IYGEPVQAERGELWERL 120

Query: 322 EHQRPNWGSNWFLGGDLNDIRDPSEKRGGRTRHLGSCNHFNNFIRNMNMEEIQFLGRPWT 501
                +    W L GD N++ DPSEK GG  R   SC  F   + +  + E+   G  ++
Sbjct: 121 TRLGLSRSGPWMLTGDFNELVDPSEKIGGPARKESSCLEFRQMLNSCGLWEVNHSGYQFS 180

Query: 502 WSNHRMGEI 528
           W  +R  E+
Sbjct: 181 WYGNRNDEL 189


>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
           (fragment)
          Length = 1365

 Score = 82.0 bits (201), Expect(2) = 4e-14
 Identities = 55/179 (30%), Positives = 79/179 (44%), Gaps = 7/179 (3%)
 Frame = +1

Query: 1   ISQLREELQFHLPDLVFICETKNKKNFVHSVFQKIKKLASW------EITDPTGLSGGLA 162
           I  L+E  + H PD++F+ ETKN ++FV+ VF        W         +P G SGGLA
Sbjct: 16  IRYLKEMKKDHFPDILFLMETKNSQDFVYKVF-------CWLGYDFIHTVEPEGRSGGLA 68

Query: 163 LAWSDQIVVKQLIVTDFSFQLEFSLQGLA*TCWGIF-IYASTDKNQRLLQWHYLEHQRPN 339
           + W   + ++ L        L+ S +      W I  +Y     + R   W +L      
Sbjct: 69  IFWKSHLEIEFLYADKNLMDLQVSSRNKV---WFISCVYGLPVTHMRPKLWEHLNSIGLK 125

Query: 340 WGSNWFLGGDLNDIRDPSEKRGGRTRHLGSCNHFNNFIRNMNMEEIQFLGRPWTWSNHR 516
               W L GD NDIR   EK GG  R   S   F + + N +M E+   G  +TW  +R
Sbjct: 126 RAEAWCLIGDFNDIRSNDEKLGGPRRSPSSFQCFEHMLLNCSMHELGSTGNSFTWGGNR 184



 Score = 21.9 bits (45), Expect(2) = 4e-14
 Identities = 17/67 (25%), Positives = 23/67 (34%)
 Frame = +3

Query: 525 NRFFASPDWLYSHPRAVLHHLYKQXXXXXXXXXXXXXXCLKPKKRFYFDKRFLDLPDFES 704
           +R F +P W    P A    L K                   + +F +DKR  D P    
Sbjct: 194 DRCFGNPAWFSIFPNAHQWFLEKFGSDHRPVLVKFTNDNELFRGQFRYDKRLDDDPYCIE 253

Query: 705 TIQAAWN 725
            I  +WN
Sbjct: 254 VIHRSWN 260


>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) -
           Arabidopsis thaliana retrotransposon Ta11-1
           gi|976278|gb|AAA75254.1| reverse transcriptase
           [Arabidopsis thaliana]
          Length = 1333

 Score = 74.7 bits (182), Expect(2) = 7e-14
 Identities = 52/170 (30%), Positives = 80/170 (47%), Gaps = 2/170 (1%)
 Frame = +1

Query: 1   ISQLREELQFHLPDLVFICETKNKKNFVHSVFQKIKKLASWEITDPTGLSGGLALAWSD- 177
           I +L E    H P+++F+ ETKN  N V  + + +     + + +P GLSGGLAL W   
Sbjct: 19  IPRLMEMRLSHFPEVLFLMETKNCSNVVVDLQEWLGYERVFTV-NPIGLSGGLALFWKKG 77

Query: 178 -QIVVKQLIVTDFSFQLEFSLQGLA*TCWGIFIYASTDKNQRLLQWHYLEHQRPNWGSNW 354
             IV+K        FQ++F       +C    +Y +   + + L W  +     N    W
Sbjct: 78  VDIVIKYADKNLIDFQIQFGSHEFYVSC----VYGNPAFSDKHLVWEKITRIGINRKEPW 133

Query: 355 FLGGDLNDIRDPSEKRGGRTRHLGSCNHFNNFIRNMNMEEIQFLGRPWTW 504
            + GD N I    EKRGG  R   S   F + + + +M E+  +G P+TW
Sbjct: 134 CMLGDFNPILHNGEKRGGPRRGDSSFLPFTDMLDSCDMLELPSIGNPFTW 183



 Score = 28.5 bits (62), Expect(2) = 7e-14
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
 Frame = +3

Query: 486 GKTLDM-VQS*NGGNRFFASPDWLYSHPRAVLHHLYKQXXXXXXXXXXXXXXCLKPKKRF 662
           GKT +M +QS    +R F + +W    P +    L K+                + +  F
Sbjct: 185 GKTNEMWIQS--RLDRCFGNKNWFRFFPISNQEFLDKRGSDHRPVLVRLTKTKEEYRGNF 242

Query: 663 YFDKRFLDLPDFESTIQAAWN 725
            FDKR  + P+ + TI  AWN
Sbjct: 243 RFDKRLFNQPNVKETIVQAWN 263


>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1750

 Score = 64.3 bits (155), Expect(2) = 2e-11
 Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 9/168 (5%)
 Frame = +1

Query: 40  DLVFICETKNKKNFVHSVFQKIKKLA------SWEITDPTGLSGGLALAWSDQIVVKQLI 201
           D++F+ ET N+ +       K+ KLA      +     P G SGGLAL W + + +  LI
Sbjct: 411 DILFLVETLNQCD-------KVCKLAYDLGFPNVITQPPNGRSGGLALMWKNNVSLS-LI 462

Query: 202 VTD---FSFQLEFSLQGLA*TCWGIFIYASTDKNQRLLQWHYLEHQRPNWGSNWFLGGDL 372
             D       + F+ +    +C    +Y    +++R   W  LEH   N  + W L GD 
Sbjct: 463 SQDERLIDSHVTFNNKSFYLSC----VYGHPTQSERHQLWQTLEHISDNRNAEWLLVGDF 518

Query: 373 NDIRDPSEKRGGRTRHLGSCNHFNNFIRNMNMEEIQFLGRPWTWSNHR 516
           N+I   +EK GG  R   +  +F N + + ++E+++  G  ++W   R
Sbjct: 519 NEILSNAEKIGGPMREEWTFRNFRNMVSHCDIEDMRSKGDRFSWVGER 566



 Score = 30.4 bits (67), Expect(2) = 2e-11
 Identities = 16/66 (24%), Positives = 26/66 (39%)
 Frame = +3

Query: 525 NRFFASPDWLYSHPRAVLHHLYKQXXXXXXXXXXXXXXCLKPKKRFYFDKRFLDLPDFES 704
           +R F +  W  + P A +  L                   +  K F FD R +D+P F+ 
Sbjct: 576 DRVFINSAWTATFPYAEIEFLDFTGSDHKPVLVHFNESFPRRSKLFRFDNRLIDIPTFKR 635

Query: 705 TIQAAW 722
            +Q +W
Sbjct: 636 IVQTSW 641