BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00039178
         (713 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD37019.2| putative non-LTR retrolelement reverse transcript...   130   3e-28
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ...   124   1e-26
gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptas...   123   3e-26
emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga...   121   2e-25
emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulga...   120   3e-25

>gb|AAD37019.2| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 855

 Score =  130 bits (326), Expect = 3e-28
 Identities = 72/189 (38%), Positives = 101/189 (53%), Gaps = 4/189 (2%)
 Frame = +2

Query: 50   VTHLLKIKSDHRPLLIQSDLRAHTTE-RKSFRFLAAWLTHQDFSKMVESNWYENESLAVS 226
            VTHL    SDH P+ IQ +    +   R+ FRF AAWLTH  F  +++++W       V+
Sbjct: 627  VTHLPFFASDHAPIYIQLEPEVRSNPLRRPFRFEAAWLTHSGFKDLLQASWNTEGETPVA 686

Query: 227  IKRFAEAATTWNRDVFGHITQRKNRAIARLKGLQEKLERKPNKYXXXXXXXXXXXXXXXX 406
            +         WNR+VFG + +RK   +  +K +QE LE                      
Sbjct: 687  LAALKSKLKKWNREVFGDVNRRKESLMNEIKVVQELLEINQTDNLLSKEEELIKEFDVVL 746

Query: 407  DQEESLWRQKACCEWLVLGDRNTKYFHSK--VRKRKNFISSLKIGD-TWVDDQESLREAA 577
            +QEE LW QK+  +W+ LGDRNTKYFH+   VR+R+N I  LK  D +WV  Q+ L + A
Sbjct: 747  EQEEVLWFQKSREKWVELGDRNTKYFHTMTVVRRRRNRIEMLKADDGSWVSQQQELEKMA 806

Query: 578  VEYFRNLYS 604
            V+Y+  LYS
Sbjct: 807  VDYYSRLYS 815


>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
           gi|7268307|emb|CAB78601.1| reverse transcriptase like
           protein [Arabidopsis thaliana]
          Length = 929

 Score =  124 bits (312), Expect = 1e-26
 Identities = 72/198 (36%), Positives = 109/198 (55%), Gaps = 4/198 (2%)
 Frame = +2

Query: 128 RKSFRFLAAWLTHQDFSKMVESNWYENESLAVSIKRFAEAATTWNRDVFGHITQRKNRAI 307
           R+ FRF AAWL+H+ F +++ ++W    S  V++ R       WN++VFG+I  RK + +
Sbjct: 52  RRPFRFEAAWLSHEGFKELLTASWDTGLSTPVALNRLRWQLKKWNKEVFGNIHVRKEKVV 111

Query: 308 ARLKGLQEKLERKPNKYXXXXXXXXXXXXXXXXDQEESLWRQKACCEWLVLGDRNTKYFH 487
           + LK +Q+ LE                       QEE+LW QK+  + L LGDRNT +FH
Sbjct: 112 SDLKAVQDLLEVVQTDDLLMKEDTLLKEFDVLLHQEETLWFQKSREKLLALGDRNTTFFH 171

Query: 488 SK--VRKRKNFISSLKIG-DTWVDDQESLREAAVEYFRNLYS-STRTVSTNLLPRGNFPI 655
           +   +R+R+N I  LK   D WV ++E+L + A++Y+R LYS    +V    LP   FP 
Sbjct: 172 TSTVIRRRRNRIEMLKDSEDRWVTEKEALEKLAMDYYRKLYSLEDVSVVRGTLPTEGFPR 231

Query: 656 LNTREVESLARVLSREEV 709
           L   E  +L R  +R+EV
Sbjct: 232 LTREEKNNLNRPFTRDEV 249


>gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
           [Medicago truncatula]
          Length = 1296

 Score =  123 bits (309), Expect = 3e-26
 Identities = 76/240 (31%), Positives = 123/240 (51%), Gaps = 4/240 (1%)
 Frame = +2

Query: 2   RALSNVKFLDLFPNVQVTHLLKIKSDHRPLLIQSDLRAHTTERKSFRFLAAWLTHQDFSK 181
           R ++NV +   FP   V  L ++ SDH PLL++      T   + FRF AAW+ H D+  
Sbjct: 197 RGMANVDWRLSFPEAFVEVLCRLHSDHNPLLLRFGGLPLTRGPRPFRFEAAWIDHYDYGN 256

Query: 182 MVESNW-YENESLAVSIKRFAEAATTWNRDVFGHITQRKNRAIARLKGLQEKLERKPNKY 358
           +V+ +W     +   S+ +  E +  +N DVFG+I QRK+R   RLKG+Q  LER  +  
Sbjct: 257 VVKRSWSTHTHNPTASLIKVMENSIIFNHDVFGNIFQRKSRVEWRLKGVQSYLERVDSYR 316

Query: 359 XXXXXXXXXXXXXXXXDQEESLWRQKACCEWLVLGDRNTKYFHSK--VRKRKNFISSLKI 532
                            QEE LW QK+  +W+ LGD+NT +FH++  +R++ N I  L++
Sbjct: 317 HTLLEKELQDEYNHILFQEEMLWYQKSREQWVKLGDKNTAFFHAQTVIRRKWNKIHKLQL 376

Query: 533 -GDTWVDDQESLREAAVEYFRNLYSSTRTVSTNLLPRGNFPILNTREVESLARVLSREEV 709
                  D   L+E A++YF+  +  ++   +     G  P L+     SL   ++++EV
Sbjct: 377 PNGISTSDSNILQEEALKYFKKFFCGSQIPYSRFFNEGRHPALDDTGKTSLTSPITKKEV 436


>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1378

 Score =  121 bits (303), Expect = 2e-25
 Identities = 79/242 (32%), Positives = 123/242 (50%), Gaps = 6/242 (2%)
 Frame = +2

Query: 2   RALSNVKFLDLFPNVQVTHLLKIKSDHRPLLIQSDLRAHTTER-KSFRFLAAWLTHQDFS 178
           R L+N ++   F    V +L K +SDH P+LI +   A      K FRF AAWL HQ F 
Sbjct: 200 RGLANSEWKLKFTEGVVRNLPKSQSDHCPILISTSGFAPVPRIIKPFRFQAAWLNHQVFC 259

Query: 179 KMVESNWYENESLAVSIKRFAEAATTWNRDVFGHITQRKNRAIARLKGLQEKLERKPNKY 358
           + V  NW  +  +   +K FA+    WN++ F +I ++K+   AR+ G+Q  L      +
Sbjct: 260 EFVRKNWNADAPIVPFLKSFADKLNKWNKEEFYNIFRKKSELWARISGVQALLSTGRQNH 319

Query: 359 XXXXXXXXXXXXXXXXDQEESLWRQKACCEWLVLGDRNTKYFH--SKVRKRKNFISSLKI 532
                           D EE+LW QK+  E +  GDRNT+YFH  + +R+ +N I  L+ 
Sbjct: 320 LIKLEAKLRREMDIVLDDEETLWFQKSRMEAICDGDRNTRYFHLSTVIRRSRNRIDMLQN 379

Query: 533 GD-TWVDDQESLREAAVEYFRNLYSSTRTVSTNL--LPRGNFPILNTREVESLARVLSRE 703
            D  W+ +   ++   + Y+++L+S   +V +N   LPR  FP +   + E + R LS  
Sbjct: 380 NDGEWISNPMEVKAMVLGYWKHLFSED-SVQSNFCHLPRDFFPQITADDFEKMMRPLSEV 438

Query: 704 EV 709
           EV
Sbjct: 439 EV 440


>emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1363

 Score =  120 bits (301), Expect = 3e-25
 Identities = 82/242 (33%), Positives = 124/242 (51%), Gaps = 5/242 (2%)
 Frame = +2

Query: 2   RALSNVKFLDLFPNVQVTHLLKIKSDHRPLLIQSDLRAHTTERKSFRFLAAWLTHQDFSK 181
           RAL N ++LDLFP+ +V HL +  SDH PLLI  +     +E   FR    W  H DF+ 
Sbjct: 200 RALVNSEWLDLFPDTKVIHLPRTFSDHCPLLILFNENPR-SESFPFRCKEVWAYHPDFTN 258

Query: 182 MVESNWYENESLAVSIK-RFAEAATTWNRDVFGHITQRKNRAIARLKGLQEKLERKPNKY 358
           ++E  W  + +  V+ +  F  +  +W++ VFG I Q+K R +ARL G+Q+ L   P+ +
Sbjct: 259 VIEETWGSHHNSYVAARDLFLSSVKSWSKYVFGSIFQKKKRILARLGGIQKSLSIHPSVF 318

Query: 359 XXXXXXXXXXXXXXXXDQEESLWRQKACCEWLVLGDRNTKYFH--SKVRKRKNFISSLKI 532
                            QE   W QKA  +   LGD NTKYFH  +K+R  K  IS LK 
Sbjct: 319 LSKLEIDLLVELNELSKQERVFWAQKAGIDRAKLGDMNTKYFHTLAKIRTCKRKISCLKN 378

Query: 533 GD-TWVDDQESLREAAVEYFRNLY-SSTRTVSTNLLPRGNFPILNTREVESLARVLSREE 706
            +  WV + E L++  + +F  ++ +S  +   N   RG   I +    + LAR +  +E
Sbjct: 379 DNHDWVSNNEDLKKMMMSHFEKIFTTSMYSHQRNNSFRGECRISDEWN-KRLARRVEEDE 437

Query: 707 VK 712
           +K
Sbjct: 438 IK 439