BLASTX nr result

ID: Cephaelis21_contig00038241 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00038241
         (346 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002865536.1| hypothetical protein ARALYDRAFT_917542 [Arab...    55   8e-06
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...    55   8e-06

>ref|XP_002865536.1| hypothetical protein ARALYDRAFT_917542 [Arabidopsis lyrata subsp.
           lyrata] gi|297311371|gb|EFH41795.1| hypothetical protein
           ARALYDRAFT_917542 [Arabidopsis lyrata subsp. lyrata]
          Length = 227

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
 Frame = +3

Query: 75  GAGRRMDEWKLDDF-----SAIAYKYFRSPRCRVGWAHKVWYFFVPSKYSFTLWLGLRGC 239
           G  + +  + LDD+     S   +   R  + +V W + VW+     +YSF +WL ++  
Sbjct: 46  GPDKPLWRYTLDDYDSSFTSRHTWNLLRKAKHKVLWHNSVWFPQRVPRYSFIVWLAVKDQ 105

Query: 240 LLARDRLEYLDIDTFCTFCEMRVESIDHLYFSCFF 344
           L    R+    ++  C FC  R ES DHL+F+C F
Sbjct: 106 LSTGTRMRAWGVEQPCVFCRERDESRDHLFFACPF 140


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
 Frame = +3

Query: 129  YKYFRSPRCRVGWAHKVWYFFVPSKYSFTLWLGLRGCLLARDRLEYL--DIDTFCTFCEM 302
            + + RS   RV W   +W+     KYSF  WL   G L   DR+      I T C FC+ 
Sbjct: 1044 WHHTRSTSARVPWHKVIWFSHATPKYSFCSWLAAHGRLPTGDRMINWANGIATDCIFCQG 1103

Query: 303  RVESIDHLYFSCFF 344
             +E+ DHL+F+C F
Sbjct: 1104 TLETRDHLFFTCSF 1117


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