BLASTX nr result
ID: Cephaelis21_contig00037172
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cephaelis21_contig00037172
(1032 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-... 180 6e-79
emb|CBI24961.3| unnamed protein product [Vitis vinifera] 180 6e-79
ref|NP_196877.1| sigma factor 4 [Arabidopsis thaliana] gi|752165... 169 1e-73
ref|XP_004149725.1| PREDICTED: RNA polymerase sigma factor sigD,... 146 9e-66
ref|XP_004169825.1| PREDICTED: RNA polymerase sigma factor sigD,... 146 9e-66
>ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
Length = 426
Score = 180 bits (456), Expect(2) = 6e-79
Identities = 90/158 (56%), Positives = 121/158 (76%)
Frame = -1
Query: 654 GSISELVPKICEATAVLTRRLRKLPTCEQIAELVKKDSLTVALALERNREPISLDQAMSV 475
GSI E+V KI EA VL+RRLR+LPT ++IAE + + TV L ER+R PIS+DQA++
Sbjct: 268 GSICEMVAKIAEARTVLSRRLRRLPTYDEIAEFIDVNVSTVRLVSERSRTPISVDQAVTS 327
Query: 474 TGCMSLQEIVTGPDEITPEAMVMKEFMKEELNNLLKRLSDREINILRLYYGLNGQTPLSF 295
GCM+LQEI+ GPDE TP+ MV ++ MK+E+ L L +RE ILRLY+G+NG+TPLSF
Sbjct: 328 QGCMTLQEIIPGPDETTPQKMVKRQLMKQEVERALNTLCEREAYILRLYFGINGETPLSF 387
Query: 294 EDIGRRLNLSRERVRQISCAALEKLREISLLNGLKVYI 181
E+IGR + LSRERVRQI+ AL KLR+ S+++ LK+Y+
Sbjct: 388 EEIGRLMKLSRERVRQINSIALSKLRQTSVVDYLKLYM 425
Score = 141 bits (356), Expect(2) = 6e-79
Identities = 63/92 (68%), Positives = 82/92 (89%)
Frame = -2
Query: 1031 RNTLDKILCNGREAQDRITRCYRRLVISVASAYQGRGLSLQDLIQEGNLGLLHGAKKFSP 852
R++LDK+LCNGRE+++RI + YRRLV+S+A+ YQG+GLSLQDLIQEG++GLL GA++F P
Sbjct: 176 RSSLDKMLCNGRESRERINQSYRRLVVSIAARYQGKGLSLQDLIQEGSIGLLRGAERFDP 235
Query: 851 EKGYKLSTYVYWWIRQAISSAVAKKSTLTRLP 756
++GYKLSTYVYWWIRQAI A+A KS + RLP
Sbjct: 236 DRGYKLSTYVYWWIRQAIVRAIANKSRIIRLP 267
>emb|CBI24961.3| unnamed protein product [Vitis vinifera]
Length = 319
Score = 180 bits (456), Expect(2) = 6e-79
Identities = 90/158 (56%), Positives = 121/158 (76%)
Frame = -1
Query: 654 GSISELVPKICEATAVLTRRLRKLPTCEQIAELVKKDSLTVALALERNREPISLDQAMSV 475
GSI E+V KI EA VL+RRLR+LPT ++IAE + + TV L ER+R PIS+DQA++
Sbjct: 161 GSICEMVAKIAEARTVLSRRLRRLPTYDEIAEFIDVNVSTVRLVSERSRTPISVDQAVTS 220
Query: 474 TGCMSLQEIVTGPDEITPEAMVMKEFMKEELNNLLKRLSDREINILRLYYGLNGQTPLSF 295
GCM+LQEI+ GPDE TP+ MV ++ MK+E+ L L +RE ILRLY+G+NG+TPLSF
Sbjct: 221 QGCMTLQEIIPGPDETTPQKMVKRQLMKQEVERALNTLCEREAYILRLYFGINGETPLSF 280
Query: 294 EDIGRRLNLSRERVRQISCAALEKLREISLLNGLKVYI 181
E+IGR + LSRERVRQI+ AL KLR+ S+++ LK+Y+
Sbjct: 281 EEIGRLMKLSRERVRQINSIALSKLRQTSVVDYLKLYM 318
Score = 141 bits (356), Expect(2) = 6e-79
Identities = 63/92 (68%), Positives = 82/92 (89%)
Frame = -2
Query: 1031 RNTLDKILCNGREAQDRITRCYRRLVISVASAYQGRGLSLQDLIQEGNLGLLHGAKKFSP 852
R++LDK+LCNGRE+++RI + YRRLV+S+A+ YQG+GLSLQDLIQEG++GLL GA++F P
Sbjct: 69 RSSLDKMLCNGRESRERINQSYRRLVVSIAARYQGKGLSLQDLIQEGSIGLLRGAERFDP 128
Query: 851 EKGYKLSTYVYWWIRQAISSAVAKKSTLTRLP 756
++GYKLSTYVYWWIRQAI A+A KS + RLP
Sbjct: 129 DRGYKLSTYVYWWIRQAIVRAIANKSRIIRLP 160
>ref|NP_196877.1| sigma factor 4 [Arabidopsis thaliana]
gi|75216509|sp|Q9ZSL6.1|SIGD_ARATH RecName: Full=RNA
polymerase sigma factor sigD, chloroplastic; Short=Sigma
factor D; Short=Sigma-D; AltName: Full=RNA polymerase
sigma factor sig4; Short=Atsig4; Short=Sigma factor 4;
Flags: Precursor gi|3983260|gb|AAC97954.1| sigma-like
factor [Arabidopsis thaliana] gi|4972296|dbj|BAA78110.1|
RNA polymerase sigma subunit SigD [Arabidopsis thaliana]
gi|9758039|dbj|BAB08700.1| sigma-like factor
[Arabidopsis thaliana] gi|332004550|gb|AED91933.1| sigma
factor 4 [Arabidopsis thaliana]
Length = 419
Score = 169 bits (429), Expect(2) = 1e-73
Identities = 87/157 (55%), Positives = 115/157 (73%)
Frame = -1
Query: 654 GSISELVPKICEATAVLTRRLRKLPTCEQIAELVKKDSLTVALALERNREPISLDQAMSV 475
GS+ EL K+ EA+ VLTR+LR+ P+CE+IAE + + V LA+ER+R P+SLD+ S
Sbjct: 258 GSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLNVSAVRLAVERSRSPVSLDRVASQ 317
Query: 474 TGCMSLQEIVTGPDEITPEAMVMKEFMKEELNNLLKRLSDREINILRLYYGLNGQTPLSF 295
G M+LQEIV GPDE PE MV +E MK E+ LL L+ RE +L LY+GLNG+TP+SF
Sbjct: 318 NGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLLGSLTARESRVLGLYFGLNGETPMSF 377
Query: 294 EDIGRRLNLSRERVRQISCAALEKLREISLLNGLKVY 184
E+IG+ L LSRERVRQI+ AL+KLR + +N LK+Y
Sbjct: 378 EEIGKSLKLSRERVRQINGIALKKLRNVHNVNDLKIY 414
Score = 134 bits (337), Expect(2) = 1e-73
Identities = 58/92 (63%), Positives = 80/92 (86%)
Frame = -2
Query: 1031 RNTLDKILCNGREAQDRITRCYRRLVISVASAYQGRGLSLQDLIQEGNLGLLHGAKKFSP 852
+ + ++ILC +EA+++ITRCYRRLV+S+A+ YQG+GL+LQDLIQEG++GLL GA++F P
Sbjct: 166 KRSANEILCRRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDP 225
Query: 851 EKGYKLSTYVYWWIRQAISSAVAKKSTLTRLP 756
++GYKLSTYVYWWI+QAI A+A KS L +LP
Sbjct: 226 DRGYKLSTYVYWWIKQAILRAIAHKSRLVKLP 257
>ref|XP_004149725.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
[Cucumis sativus]
Length = 436
Score = 146 bits (368), Expect(2) = 9e-66
Identities = 73/158 (46%), Positives = 109/158 (68%)
Frame = -1
Query: 654 GSISELVPKICEATAVLTRRLRKLPTCEQIAELVKKDSLTVALALERNREPISLDQAMSV 475
G + ++V +I E L +L + PT +++AE +K T+ L +ER++ PIS++Q ++
Sbjct: 278 GHMGQMVARIAEENNHLGIKLSRPPTNKEVAESLKVHLSTIRLVMERSKRPISINQPVND 337
Query: 474 TGCMSLQEIVTGPDEITPEAMVMKEFMKEELNNLLKRLSDREINILRLYYGLNGQTPLSF 295
C++LQEI+ GPD +TPE MVM++ MK+EL LL LS RE IL LY+GLNG+ P SF
Sbjct: 338 RSCLTLQEIMPGPDNLTPENMVMRKLMKQELKRLLNTLSKREARILSLYFGLNGEIPQSF 397
Query: 294 EDIGRRLNLSRERVRQISCAALEKLREISLLNGLKVYI 181
E+IG+ LNLSRE +RQ + A L KL++ +L+ LK Y+
Sbjct: 398 EEIGKSLNLSRETIRQTNIATLSKLKKTDVLDYLKDYL 435
Score = 131 bits (330), Expect(2) = 9e-66
Identities = 59/89 (66%), Positives = 74/89 (83%)
Frame = -2
Query: 1022 LDKILCNGREAQDRITRCYRRLVISVASAYQGRGLSLQDLIQEGNLGLLHGAKKFSPEKG 843
+D+ILC RE++DR+ RCY +LVIS+A+ YQG+GLSLQDL QEGN+GLL GA++F P +G
Sbjct: 189 IDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRG 248
Query: 842 YKLSTYVYWWIRQAISSAVAKKSTLTRLP 756
+KLSTY YWWIRQAI A+ KKS L RLP
Sbjct: 249 HKLSTYAYWWIRQAIIRALDKKSRLVRLP 277
>ref|XP_004169825.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
[Cucumis sativus]
Length = 341
Score = 146 bits (368), Expect(2) = 9e-66
Identities = 73/158 (46%), Positives = 109/158 (68%)
Frame = -1
Query: 654 GSISELVPKICEATAVLTRRLRKLPTCEQIAELVKKDSLTVALALERNREPISLDQAMSV 475
G + ++V +I E L +L + PT +++AE +K T+ L +ER++ PIS++Q ++
Sbjct: 183 GHMGQMVARIAEENNHLGIKLSRPPTNKEVAESLKVHLSTIRLVMERSKRPISINQPVND 242
Query: 474 TGCMSLQEIVTGPDEITPEAMVMKEFMKEELNNLLKRLSDREINILRLYYGLNGQTPLSF 295
C++LQEI+ GPD +TPE MVM++ MK+EL LL LS RE IL LY+GLNG+ P SF
Sbjct: 243 RSCLTLQEIMPGPDNLTPENMVMRKLMKQELKRLLNTLSKREARILSLYFGLNGEIPQSF 302
Query: 294 EDIGRRLNLSRERVRQISCAALEKLREISLLNGLKVYI 181
E+IG+ LNLSRE +RQ + A L KL++ +L+ LK Y+
Sbjct: 303 EEIGKSLNLSRETIRQTNIATLSKLKKTDVLDYLKDYL 340
Score = 131 bits (330), Expect(2) = 9e-66
Identities = 59/89 (66%), Positives = 74/89 (83%)
Frame = -2
Query: 1022 LDKILCNGREAQDRITRCYRRLVISVASAYQGRGLSLQDLIQEGNLGLLHGAKKFSPEKG 843
+D+ILC RE++DR+ RCY +LVIS+A+ YQG+GLSLQDL QEGN+GLL GA++F P +G
Sbjct: 94 IDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRG 153
Query: 842 YKLSTYVYWWIRQAISSAVAKKSTLTRLP 756
+KLSTY YWWIRQAI A+ KKS L RLP
Sbjct: 154 HKLSTYAYWWIRQAIIRALDKKSRLVRLP 182