BLASTX nr result

ID: Cephaelis21_contig00037162 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00037162
         (373 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004152207.1| PREDICTED: pentatricopeptide repeat-containi...    92   3e-17
ref|XP_003597877.1| Pentatricopeptide repeat-containing protein ...    80   2e-14
ref|XP_002303255.1| predicted protein [Populus trichocarpa] gi|2...    77   6e-14
dbj|BAJ53230.1| JHL06P13.10 [Jatropha curcas]                          78   1e-13
ref|XP_002298105.1| predicted protein [Populus trichocarpa] gi|2...    76   1e-13

>ref|XP_004152207.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80150,
           mitochondrial-like [Cucumis sativus]
           gi|449484169|ref|XP_004156805.1| PREDICTED:
           pentatricopeptide repeat-containing protein At1g80150,
           mitochondrial-like [Cucumis sativus]
          Length = 399

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 51/107 (47%), Positives = 70/107 (65%), Gaps = 1/107 (0%)
 Frame = +1

Query: 55  ACDANKLVAQMHRLGILPDEVTYNLLIKGFCRAGLLDMQKWYFYI*MIEALSLIARFINQ 234
           A DANKL+  M  +GI+PDEVTYNL+IKGFC+AGLLDM K  +    +            
Sbjct: 262 AWDANKLMKMMRNIGIVPDEVTYNLVIKGFCQAGLLDMAKRVYS--ALHGSGYKPNVKIY 319

Query: 235 ISMIHYLCRAADYDLAYT-SKNSIRKNRFPCTDISQNLLEGLWKSGK 372
            +MIHYLC++ D++LA+T  K+++ KN FP  D   +LL+GL K G+
Sbjct: 320 QTMIHYLCKSEDFNLAHTICKDAMNKNWFPNIDTIHSLLKGLNKMGE 366


>ref|XP_003597877.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|87162918|gb|ABD28713.1| Pentatricopeptide repeat
           [Medicago truncatula] gi|355486925|gb|AES68128.1|
           Pentatricopeptide repeat-containing protein [Medicago
           truncatula]
          Length = 439

 Score = 79.7 bits (195), Expect(2) = 2e-14
 Identities = 50/105 (47%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
 Frame = +1

Query: 61  DANKLVAQMHRLGILPDEVTYNLLIKGFCRAGLLDMQKWYFYI*MIEALSLIARFINQIS 240
           DANKL+A M R G+ PDEVT  L+IKGF RAG  +M    +     +   + A      +
Sbjct: 304 DANKLMALMQRNGVTPDEVTLVLVIKGFFRAGYPEMAMRVYSALHDKGYKISANIYQ--T 361

Query: 241 MIHYLCRAADYDLAYT-SKNSIRKNRFPCTDISQNLLEGLWKSGK 372
           MIH LC+  D+  AYT  K+S+RKN FP  D    LLEGL KSGK
Sbjct: 362 MIHNLCKRGDFSQAYTLCKDSMRKNWFPNVDTIFMLLEGLKKSGK 406



 Score = 23.9 bits (50), Expect(2) = 2e-14
 Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = +2

Query: 2   NIATFNARIHFLV*L-RIW 55
           N+ TFN RI FLV + R+W
Sbjct: 285 NLHTFNVRIQFLVTVRRVW 303


>ref|XP_002303255.1| predicted protein [Populus trichocarpa] gi|222840687|gb|EEE78234.1|
           predicted protein [Populus trichocarpa]
          Length = 401

 Score = 77.4 bits (189), Expect(2) = 6e-14
 Identities = 43/107 (40%), Positives = 65/107 (60%), Gaps = 1/107 (0%)
 Frame = +1

Query: 55  ACDANKLVAQMHRLGILPDEVTYNLLIKGFCRAGLLDMQKWYFYI*MIEALSLIARFINQ 234
           A  AN ++  M ++GI+PDEVTYNL+IKGF + G L+M K  ++    +      +    
Sbjct: 264 AWHANDVMRLMLKIGIVPDEVTYNLVIKGFFQTGKLEMAKMVYFSLRGKGHKFNVKVYQ- 322

Query: 235 ISMIHYLCRAADYDLAYT-SKNSIRKNRFPCTDISQNLLEGLWKSGK 372
            +M+HYLC+  ++DLAYT  ++ +R N F   D    LLEGL K+G+
Sbjct: 323 -TMVHYLCKGGEFDLAYTMCRDCMRNNWFLNVDTIHTLLEGLKKNGQ 368



 Score = 24.6 bits (52), Expect(2) = 6e-14
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 2   NIATFNARIHFLV*LR 49
           N+ATFN RI +LV +R
Sbjct: 247 NLATFNVRIQYLVNIR 262


>dbj|BAJ53230.1| JHL06P13.10 [Jatropha curcas]
          Length = 399

 Score = 77.8 bits (190), Expect(2) = 1e-13
 Identities = 45/104 (43%), Positives = 61/104 (58%), Gaps = 1/104 (0%)
 Frame = +1

Query: 61  DANKLVAQMHRLGILPDEVTYNLLIKGFCRAGLLDMQKWYFYI*MIEALSLIARFINQIS 240
           +AN ++  M R+GI PD+VTYNL+IKGFC AG L+M K  +     E       F    +
Sbjct: 264 EANDVMRLMQRIGIAPDQVTYNLVIKGFCLAGYLEMAKRVYSALQGEVYK--PNFKIYQT 321

Query: 241 MIHYLCRAADYDLAYT-SKNSIRKNRFPCTDISQNLLEGLWKSG 369
           MIHYLC+  ++DLAYT  K+ + K  +   D    LL GL K+G
Sbjct: 322 MIHYLCKGGEFDLAYTMCKDCMGKGWYLHVDTIHALLNGLMKNG 365



 Score = 23.5 bits (49), Expect(2) = 1e-13
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +2

Query: 2   NIATFNARIHFLV 40
           N+ATFN RI +LV
Sbjct: 245 NLATFNVRIQYLV 257


>ref|XP_002298105.1| predicted protein [Populus trichocarpa] gi|222845363|gb|EEE82910.1|
           predicted protein [Populus trichocarpa]
          Length = 401

 Score = 76.3 bits (186), Expect(2) = 1e-13
 Identities = 41/107 (38%), Positives = 65/107 (60%), Gaps = 1/107 (0%)
 Frame = +1

Query: 55  ACDANKLVAQMHRLGILPDEVTYNLLIKGFCRAGLLDMQKWYFYI*MIEALSLIARFINQ 234
           A  AN ++  M ++GI+PDEV+YNL++KGF + G L+M K  ++    +      +    
Sbjct: 264 AWHANDVMRLMQKIGIVPDEVSYNLVLKGFFQVGNLEMAKLVYFSLRCKGHKFNVKVYQ- 322

Query: 235 ISMIHYLCRAADYDLAYT-SKNSIRKNRFPCTDISQNLLEGLWKSGK 372
            +M+HYLC+  ++DLAYT  ++ +R N F   D    LLEGL K+G+
Sbjct: 323 -TMVHYLCKGGEFDLAYTMCRDCMRTNWFLNVDTIHTLLEGLKKNGQ 368



 Score = 24.6 bits (52), Expect(2) = 1e-13
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 2   NIATFNARIHFLV*LR 49
           N+ATFN RI +LV +R
Sbjct: 247 NLATFNVRIQYLVNIR 262


Top