BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00036790
         (957 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAB08714.1| non-LTR retroelement reverse transcriptase-like ...    87   8e-15
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta...    76   1e-11
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    75   2e-11
gb|AAC67331.1| putative non-LTR retroelement reverse transcripta...    73   9e-11
emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulga...    71   3e-10

>dbj|BAB08714.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 1197

 Score = 86.7 bits (213), Expect = 8e-15
 Identities = 57/194 (29%), Positives = 96/194 (49%), Gaps = 5/194 (2%)
 Frame = -1

Query: 579 WNVRGIGGVSSVRRLKKLCRVHSISLLFLFEPIIPEERLLSTKDLL-HFSGDLSSSSNK- 406
           WN +GIG   +VRR++++ +  S  ++FL E +  +E +L   D L  ++  L S S + 
Sbjct: 3   WNCQGIGNPKTVRRVREILKKLSPDVIFLMETMNQDEVVLKKLDFLKRYNHFLVSPSGQG 62

Query: 405 ---IWVFWAQDLHVSLSTQSEHFLHLQVQHSSYPLSCFVTGVYAKSSRLERTVL*SNLLD 235
              + +FW  D+ +++ +  ++F+  +V      +S   T VY +  + ++      L  
Sbjct: 63  KGGLALFWKHDVEMAIVSSCDNFIDARVSFKR--ISFLATYVYGEPEQSKKGATWEKLKC 120

Query: 234 LTQNVDDMPWLLGGDFNAILSIEEYRGSPVPAARSIQDFNSFLQQSDFQELPQLGGPFTW 55
           L  N ++ PW L GDFN IL   E    P  A  S  +F SF+ +    +L  LG   +W
Sbjct: 121 LADNREE-PWFLTGDFNEILDNSEKSEGPPRAEGSFVEFRSFMSECGLFDLKHLGNSLSW 179

Query: 54  TGVRRRGRVWEKLD 13
            GVR    V  +LD
Sbjct: 180 RGVRHTHLVRARLD 193


>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1715

 Score = 75.9 bits (185), Expect = 1e-11
 Identities = 51/197 (25%), Positives = 102/197 (51%), Gaps = 7/197 (3%)
 Frame = -1

Query: 582 YWNVRGIGGVSSVRRLKKLCRVHSISLLFLFEPIIPEERLLSTKDL---LHFSGDLSSS- 415
           +WN +G+G   +VRRL+++ RV+ + +LFL E    +++   T+DL   + F      S 
Sbjct: 367 FWNCQGLGQPLTVRRLEEVQRVYFLDMLFLIET---KQQDNYTRDLGVKMGFEDMCIISP 423

Query: 414 ---SNKIWVFWAQDLHVSLSTQSEHFLHLQVQHSSYPLSCFVTGVYAKSSRLERTVL*SN 244
              S  + V+W + L + + +     + L V++ ++  + +++ +Y      ER  L   
Sbjct: 424 RGLSGGLVVYWKKHLSIQVISHDVRLVDLYVEYKNF--NFYLSCIYGHPIPSERHHLWEK 481

Query: 243 LLDLTQNVDDMPWLLGGDFNAILSIEEYRGSPVPAARSIQDFNSFLQQSDFQELPQLGGP 64
           L  ++ +    PW++ GDFN IL++ E +G    +  S+Q+F + +   + ++L   G P
Sbjct: 482 LQRVSAHRSG-PWMMCGDFNEILNLNEKKGGRRRSIGSLQNFTNMINCCNMKDLKSKGNP 540

Query: 63  FTWTGVRRRGRVWEKLD 13
           ++W G R+   +   LD
Sbjct: 541 YSWVGKRQNETIESCLD 557


>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease
           H; Endonuclease/exonuclease/phosphatase [Medicago
           truncatula]
          Length = 1246

 Score = 75.5 bits (184), Expect = 2e-11
 Identities = 56/186 (30%), Positives = 85/186 (45%), Gaps = 5/186 (2%)
 Frame = -1

Query: 585 LYWNVRGIGGVSSVRRLKKLCRVHSISLLFLFEPIIPEERLLSTK-DLLHFSGDLSSSSN 409
           LYW VRGI  V +   LK     H   L+F+ EP+I  E +     D +  S    +   
Sbjct: 4   LYWTVRGIDNVDTKIALKNFFNCHKPLLIFVAEPMIAFESVPPWYWDSIGVSKYCVNGRE 63

Query: 408 ----KIWVFWAQDLHVSLSTQSEHFLHLQVQHSSYPLSCFVTGVYAKSSRLERTVL*SNL 241
                +W  W +++   +   S+  + L++  S +  + +V  VYA +  L+R  L + L
Sbjct: 64  ILQPNLWALWGREVSAIVMFISDQCIALEI--SCHQSTVYVAAVYASTFYLKRRQLWAEL 121

Query: 240 LDLTQNVDDMPWLLGGDFNAILSIEEYRGSPVPAARSIQDFNSFLQQSDFQELPQLGGPF 61
            +L Q     PWL  GDFNA+L   E R    P   S  DF ++   +    LP LG  +
Sbjct: 122 TNL-QGCFQGPWLFIGDFNAVLGAHEKRRRRPPPPLSCIDFMNWSNANLLHHLPTLGAFY 180

Query: 60  TWTGVR 43
           TW+  R
Sbjct: 181 TWSNGR 186


>gb|AAC67331.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1449

 Score = 73.2 bits (178), Expect = 9e-11
 Identities = 43/136 (31%), Positives = 71/136 (52%), Gaps = 4/136 (2%)
 Frame = -1

Query: 408 KIWVFWAQDLHVSLSTQSEHFLHLQVQHSSYPLSCFVTGVYAKSSRLERTVL*SNLLDLT 229
           ++WV W +++  +   +S+  +   V+  S     F + VYA +   ER +L ++L D  
Sbjct: 483 RLWVVWRENVRFTPFYKSDQLITCSVKLESQEEEFFYSFVYASNFAEERKILWNDLRDHM 542

Query: 228 QN--VDDMPWLLGGDFNAILSIEEY-RGSPVPAARS-IQDFNSFLQQSDFQELPQLGGPF 61
            +  + D PW++ GDFN IL ++E+ R    PA  S ++DF S +    F +L   G  F
Sbjct: 543 DSPIIRDKPWIIFGDFNEILDMDEHSRMEDHPAVTSGMRDFQSLVNYCSFSDLASHGPLF 602

Query: 60  TWTGVRRRGRVWEKLD 13
           TW   R    +W+KLD
Sbjct: 603 TWCNKRDNDPIWKKLD 618


>emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1355

 Score = 71.2 bits (173), Expect = 3e-10
 Identities = 58/203 (28%), Positives = 96/203 (47%), Gaps = 9/203 (4%)
 Frame = -1

Query: 594 INFLYWNVRGIGGVSSVRRLKKLCRVHSISLLFLFEPIIPEERLLSTKDLLHFSGDLSSS 415
           +N L WN RG+G   SVR+L+      +  ++F+ E +I +  + + K  L FS     +
Sbjct: 1   MNILCWNCRGLGNPWSVRQLRSWSNQFAPDIIFVSETMINKIEVEALKSWLGFSNAFGVA 60

Query: 414 S----NKIWVFWAQDLHVSLSTQSEHFLHLQVQHSSYPLSCFVTGVYAKSSRLERTVL*S 247
           S      + ++W +++  SL + S+H +   V+  +        GVY  +   E+ +  S
Sbjct: 61  SVGRAGGLCLYWKEEVMFSLVSFSQHHICGDVEDGNKKWR--FVGVYGWAKEEEKHLTWS 118

Query: 246 NLLDLTQNVDDMPWLLGGDFNAILSIEEYRGSPVPAARSIQDFNSFLQQSDFQELPQLGG 67
            L  L ++   +P LLGGDFN ILS  E  G      R + +F   L     ++L  +G 
Sbjct: 119 LLRHLCEDTS-LPILLGGDFNEILSAAEKEGGANRVRREMINFRDTLDTLALRDLGYVGT 177

Query: 66  PFTWTGVRRRGR-----VWEKLD 13
            +TW     RGR     + E+LD
Sbjct: 178 WYTW----ERGRSPSTCIRERLD 196