BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00035980
         (338 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD37019.2| putative non-LTR retrolelement reverse transcript...    77   1e-12
emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga...    76   3e-12
emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulga...    75   5e-12
gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptas...    66   3e-09
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ...    65   7e-09

>gb|AAD37019.2| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 855

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 40/112 (35%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
 Frame = -2

Query: 334 PLLIQTESELKTGN-QRPFRFLSPWLSHPGFNNLVASYWRENGPLLENIKDFTEAAKLWN 158
           P+ IQ E E+++   +RPFRF + WL+H GF +L+ + W   G     +       K WN
Sbjct: 639 PIYIQLEPEVRSNPLRRPFRFEAAWLTHSGFKDLLQASWNTEGETPVALAALKSKLKKWN 698

Query: 157 KEVFGYILQRKNRMIARVKGMQESLERKPNRFLVKLEEDLRAELEQILDQEK 2
           +EVFG + +RK  ++  +K +QE LE      L+  EE+L  E + +L+QE+
Sbjct: 699 REVFGDVNRRKESLMNEIKVVQELLEINQTDNLLSKEEELIKEFDVVLEQEE 750


>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1378

 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 35/96 (36%), Positives = 54/96 (56%)
 Frame = -2

Query: 289 RPFRFLSPWLSHPGFNNLVASYWRENGPLLENIKDFTEAAKLWNKEVFGYILQRKNRMIA 110
           +PFRF + WL+H  F   V   W  + P++  +K F +    WNKE F  I ++K+ + A
Sbjct: 244 KPFRFQAAWLNHQVFCEFVRKNWNADAPIVPFLKSFADKLNKWNKEEFYNIFRKKSELWA 303

Query: 109 RVKGMQESLERKPNRFLVKLEEDLRAELEQILDQEK 2
           R+ G+Q  L       L+KLE  LR E++ +LD E+
Sbjct: 304 RISGVQALLSTGRQNHLIKLEAKLRREMDIVLDDEE 339


>emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1363

 Score = 75.1 bits (183), Expect = 5e-12
 Identities = 44/112 (39%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
 Frame = -2

Query: 334 PLLIQTESELKTGNQRPFRFLSPWLSHPGFNNLVASYWRENGPLLENIKD-FTEAAKLWN 158
           PLLI   +E       PFR    W  HP F N++   W  +       +D F  + K W+
Sbjct: 228 PLLILF-NENPRSESFPFRCKEVWAYHPDFTNVIEETWGSHHNSYVAARDLFLSSVKSWS 286

Query: 157 KEVFGYILQRKNRMIARVKGMQESLERKPNRFLVKLEEDLRAELEQILDQEK 2
           K VFG I Q+K R++AR+ G+Q+SL   P+ FL KLE DL  EL ++  QE+
Sbjct: 287 KYVFGSIFQKKKRILARLGGIQKSLSIHPSVFLSKLEIDLLVELNELSKQER 338


>gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
           [Medicago truncatula]
          Length = 1296

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 42/113 (37%), Positives = 62/113 (54%), Gaps = 2/113 (1%)
 Frame = -2

Query: 334 PLLIQTESELKTGNQRPFRFLSPWLSHPGFNNLVASYW--RENGPLLENIKDFTEAAKLW 161
           PLL++      T   RPFRF + W+ H  + N+V   W    + P    IK   E + ++
Sbjct: 225 PLLLRFGGLPLTRGPRPFRFEAAWIDHYDYGNVVKRSWSTHTHNPTASLIK-VMENSIIF 283

Query: 160 NKEVFGYILQRKNRMIARVKGMQESLERKPNRFLVKLEEDLRAELEQILDQEK 2
           N +VFG I QRK+R+  R+KG+Q  LER  +     LE++L+ E   IL QE+
Sbjct: 284 NHDVFGNIFQRKSRVEWRLKGVQSYLERVDSYRHTLLEKELQDEYNHILFQEE 336


>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
           gi|7268307|emb|CAB78601.1| reverse transcriptase like
           protein [Arabidopsis thaliana]
          Length = 929

 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 35/97 (36%), Positives = 52/97 (53%)
 Frame = -2

Query: 292 QRPFRFLSPWLSHPGFNNLVASYWRENGPLLENIKDFTEAAKLWNKEVFGYILQRKNRMI 113
           +RPFRF + WLSH GF  L+ + W         +       K WNKEVFG I  RK +++
Sbjct: 52  RRPFRFEAAWLSHEGFKELLTASWDTGLSTPVALNRLRWQLKKWNKEVFGNIHVRKEKVV 111

Query: 112 ARVKGMQESLERKPNRFLVKLEEDLRAELEQILDQEK 2
           + +K +Q+ LE      L+  E+ L  E + +L QE+
Sbjct: 112 SDLKAVQDLLEVVQTDDLLMKEDTLLKEFDVLLHQEE 148