BLASTX nr result
ID: Cephaelis21_contig00035508
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cephaelis21_contig00035508
(569 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta... 74 2e-19
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 72 6e-19
gb|AAF97969.1|AC000103_19 F21J9.30 [Arabidopsis thaliana] 65 1e-17
gb|AAG03119.1|AC004133_13 F5A9.24 [Arabidopsis thaliana] 65 1e-17
gb|AAC28197.1| contains similarity to reverse transcriptases [Ar... 59 3e-17
>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1715
Score = 74.3 bits (181), Expect(2) = 2e-19
Identities = 35/102 (34%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
Frame = -1
Query: 305 LEGDKNTKYFHACSVQRRNSNRMSQLNKVGDGVCVTEDELVDEISQ-YYSELFTSTDTGG 129
L GD+NT +F+A + R++ NR+ + G+ D+ + ++++ Y+++LFT+T T
Sbjct: 708 LLGDRNTMFFYASTKLRKSRNRIKAITDA-QGIENFRDDTIGKVAENYFADLFTTTQTSD 766
Query: 128 WEEKLSGIPATITASMNSTLIQPLEDQEIEAAIFSMNPNTSP 3
WEE +SGI +T MN L+Q + DQE+ A+F++ + +P
Sbjct: 767 WEEIISGIAPKVTEQMNHELLQSVTDQEVRDAVFAIGADRAP 808
Score = 46.6 bits (109), Expect(2) = 2e-19
Identities = 25/74 (33%), Positives = 37/74 (50%)
Frame = -2
Query: 523 KIKKCRLEILNWNRKVHVNAGRRILELKTAMDELREQGGGRDWSRWNSLKEQLNNAYKAE 344
K+ CR E+ W R+ N +I LK +D E+ L++ LN AY+ E
Sbjct: 636 KLHCCRQELAKWKRRTKTNTAEKIETLKYRVDAA-ERDHTLPHQTILRLRQDLNQAYRDE 694
Query: 343 EDYWSQKARVQWLL 302
E YW K+R +W+L
Sbjct: 695 ELYWHLKSRNRWML 708
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1374
Score = 71.6 bits (174), Expect(2) = 6e-19
Identities = 34/99 (34%), Positives = 56/99 (56%)
Frame = -1
Query: 299 GDKNTKYFHACSVQRRNSNRMSQLNKVGDGVCVTEDELVDEISQYYSELFTSTDTGGWEE 120
GD+NTKYFHA + RR NR+ +L ++++L Y+ +LF S D G E
Sbjct: 348 GDRNTKYFHAATKNRRAQNRIQKLIDEEGREWTSDEDLGRVAEAYFKKLFASEDVGYTVE 407
Query: 119 KLSGIPATITASMNSTLIQPLEDQEIEAAIFSMNPNTSP 3
+L + ++ MN+ L+ P+ +E++ A FS+NP+ P
Sbjct: 408 ELENLTPLVSDQMNNNLLAPITKEEVQRATFSINPHKCP 446
Score = 47.8 bits (112), Expect(2) = 6e-19
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Frame = -2
Query: 523 KIKKCRLEILNWNRKVHVNAGRRILELKTAMDELREQ--GGGRDWSRWNSLKEQLNNAYK 350
KI CR EI W R ++ RI EL+ +D +Q R+ +R LK++L+ Y
Sbjct: 274 KIASCRREISKWKRVSKPSSAVRIQELQFKLDAATKQIPFDRRELAR---LKKELSQEYN 330
Query: 349 AEEDYWSQKARVQWL 305
EE +W +K+R+ W+
Sbjct: 331 NEEQFWQEKSRIMWM 345
>gb|AAF97969.1|AC000103_19 F21J9.30 [Arabidopsis thaliana]
Length = 1270
Score = 65.5 bits (158), Expect(2) = 1e-17
Identities = 31/99 (31%), Positives = 56/99 (56%)
Frame = -1
Query: 299 GDKNTKYFHACSVQRRNSNRMSQLNKVGDGVCVTEDELVDEISQYYSELFTSTDTGGWEE 120
G++N+KYFHA Q R R+ +L V + +E + + Y+ LF S++ G+ +
Sbjct: 311 GNRNSKYFHAAVKQNRQRKRIEKLKDVNGNMQTSEAAKGEVAAAYFGNLFKSSNPSGFTD 370
Query: 119 KLSGIPATITASMNSTLIQPLEDQEIEAAIFSMNPNTSP 3
SG+ ++ MN +L+ + QEI+ A+FS+ P ++P
Sbjct: 371 WFSGLVPRVSEVMNESLVGEVSAQEIKEAVFSIKPASAP 409
Score = 49.7 bits (117), Expect(2) = 1e-17
Identities = 24/76 (31%), Positives = 47/76 (61%)
Frame = -2
Query: 532 VASKIKKCRLEILNWNRKVHVNAGRRILELKTAMDELREQGGGRDWSRWNSLKEQLNNAY 353
VA +++ CR + +W ++ ++N+ +I +L+ A+++ + + R + LK+ L AY
Sbjct: 234 VADRLRACRKSLSSWKKQNNLNSLDKINQLEAALEK-EQSLVWPIFQRVSVLKKDLAKAY 292
Query: 352 KAEEDYWSQKARVQWL 305
+ EE YW QK+R +WL
Sbjct: 293 REEEAYWKQKSRQKWL 308
>gb|AAG03119.1|AC004133_13 F5A9.24 [Arabidopsis thaliana]
Length = 1254
Score = 65.5 bits (158), Expect(2) = 1e-17
Identities = 31/99 (31%), Positives = 56/99 (56%)
Frame = -1
Query: 299 GDKNTKYFHACSVQRRNSNRMSQLNKVGDGVCVTEDELVDEISQYYSELFTSTDTGGWEE 120
G++N+KYFHA Q R R+ +L V + +E + + Y+ LF S++ G+ +
Sbjct: 314 GNRNSKYFHAAVKQNRQRKRIEKLKDVNGNMQTSEAAKGEVAAAYFGNLFKSSNPSGFTD 373
Query: 119 KLSGIPATITASMNSTLIQPLEDQEIEAAIFSMNPNTSP 3
SG+ ++ MN +L+ + QEI+ A+FS+ P ++P
Sbjct: 374 WFSGLVPRVSEVMNESLVGEVSAQEIKEAVFSIKPASAP 412
Score = 49.7 bits (117), Expect(2) = 1e-17
Identities = 24/76 (31%), Positives = 47/76 (61%)
Frame = -2
Query: 532 VASKIKKCRLEILNWNRKVHVNAGRRILELKTAMDELREQGGGRDWSRWNSLKEQLNNAY 353
VA +++ CR + +W ++ ++N+ +I +L+ A+++ + + R + LK+ L AY
Sbjct: 237 VADRLRACRKSLSSWKKQNNLNSLDKINQLEAALEK-EQSLVWPIFQRVSVLKKDLAKAY 295
Query: 352 KAEEDYWSQKARVQWL 305
+ EE YW QK+R +WL
Sbjct: 296 REEEAYWKQKSRQKWL 311
>gb|AAC28197.1| contains similarity to reverse transcriptases [Arabidopsis
thaliana] gi|7267156|emb|CAB77868.1| putative reverse
transcriptase [Arabidopsis thaliana]
Length = 1077
Score = 58.5 bits (140), Expect(2) = 3e-17
Identities = 31/99 (31%), Positives = 51/99 (51%)
Frame = -1
Query: 299 GDKNTKYFHACSVQRRNSNRMSQLNKVGDGVCVTEDELVDEISQYYSELFTSTDTGGWEE 120
GDKN+ +FHA + RR N +S + + E+++ IS Y+ ++FTS +
Sbjct: 324 GDKNSCFFHAATNSRRAINTISVIENSAGTSVYEDSEIIETISDYFQDIFTSQEGDRTSV 383
Query: 119 KLSGIPATITASMNSTLIQPLEDQEIEAAIFSMNPNTSP 3
+ IT MN+TLI EI+ A S++P+ +P
Sbjct: 384 VAEALSPCITTDMNNTLISLPTVAEIKQACLSIHPDKAP 422
Score = 55.1 bits (131), Expect(2) = 3e-17
Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Frame = -2
Query: 565 NSECEGSPMHKVASKIKKCRLEILNWNRKVHVNAGRRILELKTAMDE-LREQGGGRDWSR 389
N + +P KV ++ CR +LNW+++ H+N+ + IL L+ ++E L + +D
Sbjct: 236 NETWKSNPSAKVDYRLHLCRAALLNWSKEHHLNSQKEILSLRVQLEEALTDDAATQD--S 293
Query: 388 WNSLKEQLNNAYKAEEDYWSQKARVQWL 305
+ L + L AY+ EE +W Q++R WL
Sbjct: 294 VDLLNQNLLLAYRKEETFWKQRSRNLWL 321